3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.view
.derivateSearch
;
12 import java
.util
.List
;
14 import java
.util
.UUID
;
16 import org
.eclipse
.jface
.viewers
.ColumnLabelProvider
;
17 import org
.eclipse
.jface
.viewers
.TreeNode
;
18 import org
.eclipse
.swt
.graphics
.Image
;
19 import org
.hibernate
.LazyInitializationException
;
21 import eu
.etaxonomy
.cdm
.api
.conversation
.ConversationHolder
;
22 import eu
.etaxonomy
.cdm
.api
.service
.IOccurrenceService
;
23 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTerm
;
24 import eu
.etaxonomy
.cdm
.model
.molecular
.DnaSample
;
25 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
26 import eu
.etaxonomy
.cdm
.model
.molecular
.SingleRead
;
27 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivedUnit
;
28 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
29 import eu
.etaxonomy
.cdm
.model
.occurrence
.GatheringEvent
;
30 import eu
.etaxonomy
.cdm
.model
.occurrence
.MediaSpecimen
;
31 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationBase
;
32 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationType
;
33 import eu
.etaxonomy
.taxeditor
.model
.ImageResources
;
34 import eu
.etaxonomy
.taxeditor
.store
.CdmStore
;
37 * Label provider for the views to show {@link SpecimenOrObservationBase}s.<br>
39 * <b>Note:</b> If you use this label provider you need to assure that you
40 * created a {@link ConversationHolder} resp. have an open session because
41 * the labels are generated from various fields of the derivate hierarchy which
42 * are lazy loaded and could therefore throw a {@link LazyInitializationException}.
44 public class DerivateLabelProvider
extends ColumnLabelProvider
{
46 private Set
<SingleRead
> multiLinkSingleReads
;
48 private static DefinedTerm photoTerm
= null;
49 private static DefinedTerm drawingTerm
= null;
50 private static DefinedTerm specimenScanTerm
= null;
51 private static DefinedTerm detailImageTerm
= null;
53 private static void initializeTerms() {
54 List
<DefinedTerm
> preferredTerms
= CdmStore
.getTermManager().getPreferredTerms(DefinedTerm
.class);
55 for (DefinedTerm definedTerm
: preferredTerms
) {
56 if(definedTerm
.getUuid().equals(UUID
.fromString("c5c59c42-f254-471e-96c6-09f459f7c903"))){
57 photoTerm
= definedTerm
;
59 else if(definedTerm
.getUuid().equals(UUID
.fromString("669b0409-4aa4-4695-aae4-a95ed27bad4c"))){
60 drawingTerm
= definedTerm
;
62 else if(definedTerm
.getUuid().equals(UUID
.fromString("acda15be-c0e2-4ea8-8783-b9b0c4ad7f03"))){
63 specimenScanTerm
= definedTerm
;
65 else if(definedTerm
.getUuid().equals(UUID
.fromString("31eb8d02-bf5d-437c-bcc6-87a626445f34"))){
66 detailImageTerm
= definedTerm
;
71 public static DefinedTerm
getLivingPlantPhotoTerm(){
78 public static DefinedTerm
getArtworkTerm(){
79 if(drawingTerm
==null){
85 public static DefinedTerm
getSpecimenScanTerm(){
86 if(specimenScanTerm
==null){
89 return specimenScanTerm
;
92 public static DefinedTerm
getDetailImageTerm(){
93 if(detailImageTerm
==null){
96 return detailImageTerm
;
102 public String
getText(Object element
) {
103 return getDerivateText(element
);
108 public String
getToolTipText(Object element
) {
109 return getDerivateText(element
);
117 public static String
getDerivateText(Object element
){
118 TreeNode parentNode
= null;
119 if(element
instanceof TreeNode
){
120 parentNode
= ((TreeNode
) element
).getParent();
121 //unwrap specimen from TreeNode
122 element
= ((TreeNode
) element
).getValue();
126 if(element
instanceof FieldUnit
){
127 FieldUnit fieldUnit
= (FieldUnit
)element
;
128 GatheringEvent gatheringEvent
= fieldUnit
.getGatheringEvent();
129 if(gatheringEvent
!=null){
130 label
+= gatheringEvent
.getCountry()!=null?gatheringEvent
.getCountry().getLabel()+", ":"";
131 label
+= gatheringEvent
.getLocality()!=null?gatheringEvent
.getLocality().getText()+", ":"";
132 label
+= gatheringEvent
.getGatheringDate()!=null?gatheringEvent
.getGatheringDate()+", ":"";
133 label
+= gatheringEvent
.getCollector()!=null?gatheringEvent
.getCollector()+", ":"";
135 label
+= fieldUnit
.getFieldNumber()!=null?fieldUnit
.getFieldNumber():"";
137 else if(element
instanceof MediaSpecimen
){
138 MediaSpecimen mediaSpecimen
= (MediaSpecimen
)element
;
139 label
+= mediaSpecimen
.getMediaSpecimen().getTitle()!=null?mediaSpecimen
.getMediaSpecimen().getTitle().getText()+", ":"[no motif]";
140 label
+= mediaSpecimen
.getMediaSpecimen().getArtist()!=null?mediaSpecimen
.getMediaSpecimen().getArtist()+", ":"";
141 eu
.etaxonomy
.cdm
.model
.occurrence
.Collection collection
= mediaSpecimen
.getCollection();
142 if(collection
!=null){
143 label
+= collection
.getName()!=null?collection
.getName()+" ":"";
144 label
+= collection
.getCode()!=null?
"("+collection
.getCode()+"), ":"";
146 label
+= mediaSpecimen
.getAccessionNumber()!=null?mediaSpecimen
.getAccessionNumber()+", ":"";
148 else if(element
instanceof DnaSample
149 || (element
instanceof DerivedUnit
150 && ((SpecimenOrObservationBase
<?
>) element
).getRecordBasis()==SpecimenOrObservationType
.DnaSample
)){
151 label
+= "[no sample designation]";
154 else if(element
instanceof DerivedUnit
){
155 DerivedUnit derivedUnit
= (DerivedUnit
)element
;
156 if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.PreservedSpecimen
){
157 java
.util
.Collection
<FieldUnit
> fieldUnits
= CdmStore
.getService(IOccurrenceService
.class).getFieldUnits(derivedUnit
.getUuid());
158 if(fieldUnits
!=null && !fieldUnits
.isEmpty()){
159 FieldUnit fieldUnit
= fieldUnits
.iterator().next();
160 GatheringEvent gatheringEvent
= fieldUnit
.getGatheringEvent();
161 // gatheringEvent = HibernateProxyHelper.deproxy(gatheringEvent, GatheringEvent.class);
162 if(gatheringEvent
!=null){
163 label
+= gatheringEvent
.getCollector()!=null?gatheringEvent
.getCollector()+", ":"";
165 label
+= fieldUnit
.getFieldNumber()!=null?fieldUnit
.getFieldNumber()+", ":"";
167 eu
.etaxonomy
.cdm
.model
.occurrence
.Collection collection
= derivedUnit
.getCollection();
168 if(collection
!=null){
169 label
+= collection
.getName()!=null?collection
.getName()+" ":"";
170 label
+= collection
.getCode()!=null?
"("+collection
.getCode()+"), ":"";
172 label
+= derivedUnit
.getAccessionNumber()!=null?derivedUnit
.getAccessionNumber()+", ":"";
173 label
+= derivedUnit
.getBarcode()!=null?derivedUnit
.getBarcode():"";
175 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.TissueSample
){
177 label
+= "kindofTissue? + [no sample designation]";
180 else if(element
instanceof Sequence
){
181 Sequence sequence
= (Sequence
)element
;
182 label
+= "[no sample designation]"+", ";
183 label
+= sequence
.getDnaMarker()!=null?sequence
.getDnaMarker():"";
185 else if(element
instanceof SingleRead
){
186 SingleRead singleRead
= (SingleRead
)element
;
187 label
+= "[no sample designation]"+", ";
188 label
+= singleRead
.getPrimer()!=null?singleRead
.getPrimer().getLabel()+", ":"";
189 if(parentNode
!=null && parentNode
.getValue() instanceof Sequence
){
190 Sequence sequence
= (Sequence
) parentNode
.getValue();
191 label
+= sequence
.getDnaMarker()!=null?sequence
.getDnaMarker():"";
194 else if(element
instanceof SpecimenOrObservationBase
){
195 SpecimenOrObservationBase
<?
> derivate
= (SpecimenOrObservationBase
<?
>) element
;
196 SpecimenOrObservationType type
= derivate
.getRecordBasis();
197 return derivate
.getTitleCache() + (type
!=null?
" ["+type
.toString()+"]":"");
200 label
= element
.toString();
203 else if(label
.endsWith(", ")){
204 label
= label
.substring(0, label
.length()-2);
210 * @see org.eclipse.jface.viewers.ColumnLabelProvider#getImage(java.lang.Object)
213 public Image
getImage(Object element
) {
214 if(element
instanceof TreeNode
){
215 element
= ((TreeNode
) element
).getValue();
217 if(element
instanceof FieldUnit
){
218 return ImageResources
.getImage(ImageResources
.FIELD_UNIT
);
220 else if(element
instanceof DerivedUnit
){
221 DerivedUnit derivedUnit
= (DerivedUnit
)element
;
222 if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.FieldUnit
){
223 return ImageResources
.getImage(ImageResources
.FIELD_UNIT
);
225 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.DnaSample
){
226 return ImageResources
.getImage(ImageResources
.DNA_SAMPLE_DERIVATE
);
228 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.TissueSample
){
229 return ImageResources
.getImage(ImageResources
.TISSUE_SAMPLE_DERIVATE
);
231 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.PreservedSpecimen
){
232 return ImageResources
.getImage(ImageResources
.SPECIMEN_DERIVATE
);
234 else if(derivedUnit
.getRecordBasis()==SpecimenOrObservationType
.Media
){
235 if(derivedUnit
.getKindOfUnit()!=null){
236 if(derivedUnit
.getKindOfUnit().equals(getArtworkTerm())){
237 return ImageResources
.getImage(ImageResources
.ARTWORK_DERIVATE
);
239 else if(derivedUnit
.getKindOfUnit().equals(getLivingPlantPhotoTerm())){
240 return ImageResources
.getImage(ImageResources
.LIVING_PLANT_PHOTO_DERIVATE
);
242 else if(derivedUnit
.getKindOfUnit().equals(getSpecimenScanTerm())){
243 return ImageResources
.getImage(ImageResources
.SPECIMEN_SCAN_DERIVATE
);
245 else if(derivedUnit
.getKindOfUnit().equals(getDetailImageTerm())){
246 return ImageResources
.getImage(ImageResources
.DETAIL_IMAGE_DERIVATE
);
251 else if(element
instanceof Sequence
){
252 return ImageResources
.getImage(ImageResources
.SEQUENCE_DERIVATE
);
255 else if(element
instanceof SingleRead
){
256 if(multiLinkSingleReads
.contains(element
)){
257 return ImageResources
.getImage(ImageResources
.SINGLE_READ_DERIVATE_MULTILINK
);
260 return ImageResources
.getImage(ImageResources
.SINGLE_READ_DERIVATE
);
263 return super.getImage(element
);
267 * @param multiLinkSingleReads2
269 public void setMultiLinkSingleReads(Set
<SingleRead
> multiLinkSingleReads
) {
270 this.multiLinkSingleReads
= multiLinkSingleReads
;