3 * Copyright (C) 2015 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.operation
;
12 import java
.util
.ArrayList
;
13 import java
.util
.Iterator
;
14 import java
.util
.List
;
16 import java
.util
.UUID
;
18 import org
.apache
.log4j
.Logger
;
19 import org
.eclipse
.core
.commands
.ExecutionException
;
20 import org
.junit
.Assert
;
21 import org
.junit
.Ignore
;
22 import org
.junit
.Test
;
23 import org
.unitils
.dbunit
.annotation
.DataSet
;
25 import eu
.etaxonomy
.cdm
.api
.service
.IClassificationService
;
26 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonNodeService
;
27 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
28 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
29 import eu
.etaxonomy
.cdm
.model
.common
.OriginalSourceType
;
30 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementSource
;
31 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
32 import eu
.etaxonomy
.cdm
.model
.description
.TaxonDescription
;
33 import eu
.etaxonomy
.cdm
.model
.description
.TextData
;
34 import eu
.etaxonomy
.cdm
.model
.name
.BotanicalName
;
35 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
36 import eu
.etaxonomy
.cdm
.model
.name
.NonViralName
;
37 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
38 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
39 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
40 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonNode
;
41 import eu
.etaxonomy
.taxeditor
.editor
.name
.operation
.CreateSynonymInExistingHomotypicalGroupOperation
;
42 import eu
.etaxonomy
.taxeditor
.store
.CdmStore
;
51 public class TaxonNameEditorTest
extends BaseOperationTest
{
53 private static final Logger logger
= Logger
.getLogger(TaxonNameEditorTest
.class);
55 ITaxonNodeService taxonNodeService
= getRemoteApplicationController().getTaxonNodeService();
56 ITaxonService taxonService
= getRemoteApplicationController().getTaxonService();
57 IClassificationService classificationService
= getRemoteApplicationController().getClassificationService();
59 Language english
= Language
.getLanguageFromUuid(Language
.uuidEnglish
);
63 public void testAddHomotypicSynonym() throws ExecutionException
{
64 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
66 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
67 Taxon taxon
= taxonNode
.getTaxon();
68 HomotypicalGroup group
= taxon
.getHomotypicGroup();
69 BotanicalName newSynonymName
= BotanicalName
.NewInstance(null);
70 newSynonymName
.setTitleCache("New Synonym", true);
71 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
72 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
74 operation
.execute(monitor
, info
);
75 taxonNodeService
.merge(taxonNode
);
76 Assert
.assertEquals(taxon
.getHomotypicGroup().getTypifiedNames().size(), 2);
77 Assert
.assertEquals(taxon
.getSynonyms().size(), 1);
78 Iterator
<Synonym
> synonymItr
= taxon
.getSynonyms().iterator();
79 Synonym synonym
= synonymItr
.next();
80 Assert
.assertTrue(taxon
.getHomotypicGroup().getTypifiedNames().contains(synonym
.getName()));
84 public void addHeterotypicSynonym() throws ExecutionException
{
85 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
87 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
88 Taxon taxon
= taxonNode
.getTaxon();
89 HomotypicalGroup group
= taxon
.getHomotypicGroup();
90 BotanicalName newSynonymName
= BotanicalName
.NewInstance(null);
91 newSynonymName
.setTitleCache("New Synonym", true);
92 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
93 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
95 operation
.execute(monitor
, info
);
96 taxonNodeService
.merge(taxonNode
);
102 public void addDeleteAddHomotypicSynonym() throws ExecutionException
{
103 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
105 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
106 Taxon taxon
= taxonNode
.getTaxon();
107 HomotypicalGroup group
= taxon
.getHomotypicGroup();
108 BotanicalName newSynonymName
= BotanicalName
.NewInstance(null);
109 newSynonymName
.setTitleCache("New Synonym", true);
110 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
111 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
113 operation
.execute(monitor
, info
);
114 taxonNodeService
.merge(taxonNode
);
115 Assert
.assertEquals(taxon
.getHomotypicGroup().getTypifiedNames().size(), 2);
117 Set
<Synonym
> synonyms
= taxon
.getSynonyms();
118 for(Synonym synonym
: synonyms
) {
119 taxonService
.deleteSynonym(synonym
.getUuid(), taxon
.getUuid(), null);
122 taxonNodeService
.merge(taxonNode
);
124 newSynonymName
= BotanicalName
.NewInstance(null);
125 newSynonymName
.setTitleCache("Another New Synonym", true);
126 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
127 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
129 operation
.execute(monitor
, info
);
130 taxonNodeService
.merge(taxonNode
);
134 public void swapSynonymWithAcceptedTaxon() throws ExecutionException
{
135 List
<TaxonNode
> rootEntities
= new ArrayList
<TaxonNode
>();
136 UUID taxonNodeUuid
= UUID
.fromString("d425a971-1abe-4895-9e1f-1e5c8ff1c84c");
137 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
138 rootEntities
.add(taxonNode
);
140 UUID taxonUuid
= UUID
.fromString("9763e5f0-6cd4-4d96-b8a4-4420854f7727");
141 Taxon taxon
= (Taxon
)taxonService
.load(taxonUuid
);
142 TaxonNameBase taxonName
= taxon
.getName();
144 UUID synonymUuid
= UUID
.fromString("1eb173bd-b174-4162-8ff5-5136d8f1e746");
145 Synonym synonym
= (Synonym
)taxonService
.load(synonymUuid
);
146 TaxonNameBase synonymName
= synonym
.getName();
148 taxonService
.swapSynonymAndAcceptedTaxon(synonym
.getUuid(), taxon
.getUuid());
150 Assert
.assertEquals(taxonName
, synonym
.getName());
151 Assert
.assertEquals(synonymName
, taxon
.getName());
155 public void addTaxon() {
156 NonViralName taxonName
= NonViralName
.NewInstance(null);
157 Taxon taxon
= Taxon
.NewInstance(taxonName
, null);
158 taxonService
.merge(taxon
);
163 public void addDescription() {
164 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
166 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
167 Taxon taxon
= taxonNode
.getTaxon();
168 TaxonDescription description
= TaxonDescription
.NewInstance(taxon
);
171 TextData textData
= TextData
.NewInstance();
173 textData
.setFeature(Feature
.ECOLOGY());
174 description
.addElement(textData
);
176 DescriptionElementSource descriptionElementSource
= DescriptionElementSource
.NewInstance(OriginalSourceType
.PrimaryTaxonomicSource
);
177 textData
.addSource(descriptionElementSource
);
180 CdmStore
.getService(ITaxonNodeService
.class).merge(taxonNode
);
187 public void addTaxonNodeCascadeProblem() {
188 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
190 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
191 Taxon childTaxon
= Taxon
.NewInstance(null, null);
192 TaxonNode childTaxonNode
= taxonNode
.addChildTaxon(childTaxon
, null, null);
193 Taxon grandChildTaxon
= Taxon
.NewInstance(null, null);
194 TaxonNode grandChildTaxonNode
= childTaxonNode
.addChildTaxon(grandChildTaxon
, null, null);
196 CdmStore
.getService(ITaxonNodeService
.class).merge(taxonNode
, true);
198 Assert
.assertEquals(taxonNode
.getChildNodes().get(0).getId(), childTaxonNode
.getId());
199 Assert
.assertEquals(taxonNode
.getChildNodes().get(0).getTaxon().getId(), childTaxon
.getId());
200 Assert
.assertEquals(taxonNode
.getChildNodes().get(0).getChildNodes().get(0).getId(), grandChildTaxonNode
.getId());
201 Assert
.assertEquals(taxonNode
.getChildNodes().get(0).getChildNodes().get(0).getTaxon().getId(), grandChildTaxon
.getId());