eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceGeneralDetailElement.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
  11
  12 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  13 import eu.etaxonomy.cdm.model.common.TermType;
  14 import eu.etaxonomy.cdm.model.molecular.Sequence;
  15 import eu.etaxonomy.cdm.model.molecular.SequenceString;
  16 import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
  17 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  18 import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
  19 import eu.etaxonomy.taxeditor.ui.element.NumberWithLabelElement;
  20 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  21 import eu.etaxonomy.taxeditor.ui.element.UriWithLabelElement;
  22 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  23
  24 /**
  25  * @author pplitzner
  26  * @date 19.12.2013
  27  *
  28  */
  29 public class SequenceGeneralDetailElement extends AbstractCdmDetailElement<Sequence> {
  30
  31     private TermComboElement<DefinedTerm> comboMarker;
  32     private TextWithLabelElement textConsensusSequence;
  33     private NumberWithLabelElement textConsensusSequenceLength;
  34     private TextWithLabelElement textBarcodeSequence;
  35     private TextWithLabelElement textGeneticAccessNo;
  36     private TextWithLabelElement textBoldProcessID;
  37     private UriWithLabelElement textBoldUri;
  38
  39     /**
  40      * @param formFactory
  41      * @param formElement
  42      */
  43     public SequenceGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  44         super(formFactory, formElement);
  45     }
  46
  47     /*
  48      * (non-Javadoc)
  49      *
  50      * @see
  51      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
  52      * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
  53      */
  54     @Override
  55     protected void createControls(ICdmFormElement formElement, Sequence entity, int style) {
  56         comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style);
  57         textConsensusSequence = formFactory.createTextWithLabelElement(formElement, "Consensus Sequence 5'->3'", entity.getConsensusSequence().getString(), style);
  58         textConsensusSequenceLength = formFactory.createNumberTextWithLabelElement(formElement, "Consensus Seq. Length", entity.getConsensusSequence().getLength(), style);
  59         textConsensusSequenceLength.setEnabled(false);
  60         textBarcodeSequence = formFactory.createTextWithLabelElement(formElement, "Barcode Sequence 5'->3'", entity.getBarcodeSequencePart()==null?"":entity.getBarcodeSequencePart().getString(), style);
  61
  62         textGeneticAccessNo = formFactory.createTextWithLabelElement(formElement, "Genetic Acc. No.", entity.getGeneticAccessionNumber(), style);
  63         textBoldProcessID = formFactory.createTextWithLabelElement(formElement, "BOLD Process ID", entity.getBoldProcessId(), style);
  64         textBoldUri = formFactory.createUriWithLabelElement(formElement, "BOLD URI", entity.getBoldUri(), style);
  65         textBoldUri.setEnabled(false);
  66
  67     }
  68
  69     /*
  70      * (non-Javadoc)
  71      *
  72      * @see
  73      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
  74      * .lang.Object)
  75      */
  76     @Override
  77     public void handleEvent(Object eventSource) {
  78         if(eventSource==comboMarker){
  79             getEntity().setDnaMarker(comboMarker.getSelection());
  80         }
  81         else if(eventSource==textConsensusSequence){
  82             SequenceString consensusSequence = getEntity().getConsensusSequence();
  83             if(consensusSequence==null){
  84                 consensusSequence = SequenceString.NewInstance();
  85             }
  86             consensusSequence.setString(textConsensusSequence.getText());
  87             getEntity().setConsensusSequence(consensusSequence);
  88             textConsensusSequenceLength.setNumber(consensusSequence.getLength());
  89         }
  90         else if(eventSource==textConsensusSequenceLength){
  91             // this is a derived value and should not be edited
  92         }
  93         else if(eventSource==textBarcodeSequence){
  94             SequenceString barcodeSequencePart = getEntity().getBarcodeSequencePart();
  95             if(barcodeSequencePart==null){
  96                 barcodeSequencePart = SequenceString.NewInstance();
  97             }
  98             barcodeSequencePart.setString(textBarcodeSequence.getText());
  99             getEntity().setBarcodeSequencePart(barcodeSequencePart);
 100         }
 101         else if(eventSource==textGeneticAccessNo){
 102             getEntity().setGeneticAccessionNumber(textGeneticAccessNo.getText());
 103         }
 104         else if(eventSource==textBoldProcessID){
 105             getEntity().setBoldProcessId(textBoldProcessID.getText());
 106             if(textBoldProcessID.getText()!=null && !textBoldProcessID.getText().isEmpty()){
 107                 textBoldUri.setUri(getEntity().getBoldUri());
 108             }
 109             else{
 110                 textBoldUri.setText("");
 111             }
 112         }
 113         else if(eventSource==textBoldUri){
 114             //cannot be set because it is generated from the genetic access number and a base URI
 115         }
 116     }
 117
 118 }