eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceGeneralDetailElement.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
  11
  12 import org.eclipse.swt.widgets.Text;
  13
  14 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  15 import eu.etaxonomy.cdm.model.common.TermType;
  16 import eu.etaxonomy.cdm.model.molecular.Sequence;
  17 import eu.etaxonomy.cdm.model.molecular.SequenceString;
  18 import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
  19 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  20 import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
  21 import eu.etaxonomy.taxeditor.ui.element.NumberWithLabelElement;
  22 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  23 import eu.etaxonomy.taxeditor.ui.element.UriWithLabelElement;
  24 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  25
  26 /**
  27  * @author pplitzner
  28  * @date 19.12.2013
  29  *
  30  */
  31 public class SequenceGeneralDetailElement extends AbstractCdmDetailElement<Sequence> {
  32
  33     private TermComboElement<DefinedTerm> comboMarker;
  34     private TextWithLabelElement textConsensusSequence;
  35     private NumberWithLabelElement textConsensusSequenceLength;
  36     private TextWithLabelElement textBarcodeSequence;
  37     private TextWithLabelElement textGeneticAccessNo;
  38     private UriWithLabelElement textNCBIUri;
  39     private UriWithLabelElement textENAUri;
  40     private UriWithLabelElement textDDBJUri;
  41     private TextWithLabelElement textBoldProcessID;
  42     private UriWithLabelElement textBoldUri;
  43
  44     /**
  45      * @param formFactory
  46      * @param formElement
  47      */
  48     public SequenceGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  49         super(formFactory, formElement);
  50     }
  51
  52     /*
  53      * (non-Javadoc)
  54      *
  55      * @see
  56      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
  57      * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
  58      */
  59     @Override
  60     protected void createControls(ICdmFormElement formElement, Sequence entity, int style) {
  61         comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style);
  62 //        textConsensusSequence = formFactory.createTextWithLabelElement(formElement, "Consensus Sequence 5'->3'", entity.getConsensusSequence().getString(), style);
  63 //        textConsensusSequenceLength = formFactory.createNumberTextWithLabelElement(formElement, "Consensus Seq. Length", entity.getConsensusSequence().getLength(), style);
  64 //        ((Text) textConsensusSequenceLength.getMainControl()).setEditable(false);
  65         textBarcodeSequence = formFactory.createTextWithLabelElement(formElement, "Barcode Sequence 5'->3'", entity.getBarcodeSequencePart()==null?"":entity.getBarcodeSequencePart().getString(), style);
  66
  67         textGeneticAccessNo = formFactory.createTextWithLabelElement(formElement, "Genetic Acc. No.", entity.getGeneticAccessionNumber(), style);
  68         textNCBIUri = formFactory.createUriWithLabelElement(formElement, "NCBI URI", entity.getGenBankUri(), style);
  69         ((Text) textNCBIUri.getMainControl()).setEditable(false);
  70         textENAUri = formFactory.createUriWithLabelElement(formElement, "ENA URI", entity.getEmblUri(), style);
  71         ((Text) textENAUri.getMainControl()).setEditable(false);
  72         textDDBJUri = formFactory.createUriWithLabelElement(formElement, "DDBJ URI", entity.getDdbjUri(), style);
  73         ((Text) textDDBJUri.getMainControl()).setEditable(false);
  74         textBoldProcessID = formFactory.createTextWithLabelElement(formElement, "BOLD Process ID", entity.getBoldProcessId(), style);
  75         textBoldUri = formFactory.createUriWithLabelElement(formElement, "BOLD URI", entity.getBoldUri(), style);
  76         ((Text) textBoldUri.getMainControl()).setEditable(false);
  77         ((Text) textBoldUri.getMainControl()).setToolTipText("Query BOLD");
  78     }
  79
  80     /*
  81      * (non-Javadoc)
  82      *
  83      * @see
  84      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
  85      * .lang.Object)
  86      */
  87     @Override
  88     public void handleEvent(Object eventSource) {
  89         if(eventSource==comboMarker){
  90             getEntity().setDnaMarker(comboMarker.getSelection());
  91         }
  92         else if(eventSource==textConsensusSequence){
  93             SequenceString consensusSequence = getEntity().getConsensusSequence();
  94             if(consensusSequence==null){
  95                 consensusSequence = SequenceString.NewInstance();
  96             }
  97             consensusSequence.setString(textConsensusSequence.getText());
  98             getEntity().setConsensusSequence(consensusSequence);
  99             textConsensusSequenceLength.setNumber(consensusSequence.getLength());
 100         }
 101         else if(eventSource==textBarcodeSequence){
 102             SequenceString barcodeSequencePart = getEntity().getBarcodeSequencePart();
 103             if(barcodeSequencePart==null){
 104                 barcodeSequencePart = SequenceString.NewInstance();
 105             }
 106             barcodeSequencePart.setString(textBarcodeSequence.getText());
 107             getEntity().setBarcodeSequencePart(barcodeSequencePart);
 108         }
 109         else if(eventSource==textGeneticAccessNo){
 110             getEntity().setGeneticAccessionNumber(textGeneticAccessNo.getText());
 111             if(textGeneticAccessNo.getText()!=null && !textGeneticAccessNo.getText().isEmpty()){
 112                 textNCBIUri.setUri(getEntity().getGenBankUri());
 113                 textENAUri.setUri(getEntity().getEmblUri());
 114                 textDDBJUri.setUri(getEntity().getDdbjUri());
 115             }
 116             else{
 117                 textNCBIUri.setText("");
 118                 textENAUri.setText("");
 119                 textDDBJUri.setText("");
 120             }
 121         }
 122         else if(eventSource==textBoldProcessID){
 123             getEntity().setBoldProcessId(textBoldProcessID.getText());
 124             if(textBoldProcessID.getText()!=null && !textBoldProcessID.getText().isEmpty()){
 125                 textBoldUri.setUri(getEntity().getBoldUri());
 126             }
 127             else{
 128                 textBoldUri.setText("");
 129             }
 130         }
 131     }
 132
 133 }