reintegrated redlist branch into trunk
[taxeditor.git] / eu.etaxonomy.taxeditor.store / src / main / java / eu / etaxonomy / taxeditor / view / detail / DetailsViewer.java
1
2 // $Id$
3 /**
4 * Copyright (C) 2011 EDIT
5 * European Distributed Institute of Taxonomy
6 * http://www.e-taxonomy.eu
7 *
8 * The contents of this file are subject to the Mozilla Public License Version 1.1
9 * See LICENSE.TXT at the top of this package for the full license terms.
10 */
11
12 package eu.etaxonomy.taxeditor.view.detail;
13
14 import java.util.Set;
15
16 import org.eclipse.jface.viewers.ISelection;
17 import org.eclipse.jface.viewers.SelectionChangedEvent;
18 import org.eclipse.jface.viewers.TreeNode;
19 import org.eclipse.swt.SWT;
20 import org.eclipse.swt.widgets.Composite;
21 import org.eclipse.ui.forms.widgets.ExpandableComposite;
22
23 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
24 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
25 import eu.etaxonomy.cdm.api.service.ITermService;
26 import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
27 import eu.etaxonomy.cdm.model.agent.Person;
28 import eu.etaxonomy.cdm.model.agent.Team;
29 import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
30 import eu.etaxonomy.cdm.model.common.DefinedTermBase;
31 import eu.etaxonomy.cdm.model.common.Group;
32 import eu.etaxonomy.cdm.model.common.Marker;
33 import eu.etaxonomy.cdm.model.common.MarkerType;
34 import eu.etaxonomy.cdm.model.common.TermVocabulary;
35 import eu.etaxonomy.cdm.model.common.User;
36 import eu.etaxonomy.cdm.model.description.CategoricalData;
37 import eu.etaxonomy.cdm.model.description.DescriptionBase;
38 import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
39 import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
40 import eu.etaxonomy.cdm.model.description.SpecimenDescription;
41 import eu.etaxonomy.cdm.model.media.Media;
42 import eu.etaxonomy.cdm.model.molecular.Amplification;
43 import eu.etaxonomy.cdm.model.molecular.DnaSample;
44 import eu.etaxonomy.cdm.model.molecular.Sequence;
45 import eu.etaxonomy.cdm.model.molecular.SingleRead;
46 import eu.etaxonomy.cdm.model.name.NonViralName;
47 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
48 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
49 import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
50 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
51 import eu.etaxonomy.cdm.model.reference.Reference;
52 import eu.etaxonomy.cdm.model.taxon.TaxonBase;
53 import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
54 import eu.etaxonomy.taxeditor.editor.UsageTermCollection;
55 import eu.etaxonomy.taxeditor.model.AbstractUtility;
56 import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
57 import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
58 import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
59 import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
60 import eu.etaxonomy.taxeditor.store.CdmStore;
61 import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
62 import eu.etaxonomy.taxeditor.ui.element.RootElement;
63 import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
64 import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
65 import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
66 import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
67 import eu.etaxonomy.taxeditor.ui.section.description.DescribedSpecimenSection;
68 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
69 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
70 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
71 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
72 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
73 import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
74 import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
75 import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
76 import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
77 import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
78 import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
79 import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
80 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
81 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
82 import eu.etaxonomy.taxeditor.ui.section.key.TaxonomicScopeSection;
83 import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
84 import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
85 import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
86 import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
87 import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
88 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
89 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
90 import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
91 import eu.etaxonomy.taxeditor.ui.section.occurrence.EmptySection;
92 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
93 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
94 import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
95 import eu.etaxonomy.taxeditor.ui.section.occurrence.OriginalLabelDataSection;
96 import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenDetailSection;
97 import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenDeterminationDetailSection;
98 import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenGeneralDetailSection;
99 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationCloningDetailSection;
100 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationGelPhotoCollectionDetailSection;
101 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationGeneralDetailSection;
102 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationPrimerDetailSection;
103 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
104 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
105 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
106 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
107 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
108 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
109 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
110 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
111 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.LivingPlantPhotoGeneralDetailSection;
112 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
113 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.SpecimenScanGeneralDetailSection;
114 import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
115 import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
116 import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
117 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
118 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
119 import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
120 import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
121 import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
122 import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
123 import eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer;
124 import eu.etaxonomy.taxeditor.view.AbstractCdmViewPart;
125
126 /**
127 *
128 * The DetailsViewer handles the content of the details view (
129 * {@link DetailsViewPart}).<br>
130 * Depending on the type of the selected element the section of the details view
131 * are created.
132 *
133 * @author n.hoffmann
134 * @created Feb 12, 2010
135 * @version 1.0
136 */
137 public class DetailsViewer extends AbstractCdmDataViewer {
138
139 private ISelection selection;
140
141 /**
142 * <p>
143 * Constructor for DetailsViewer.
144 * </p>
145 *
146 * @param parent
147 * a {@link org.eclipse.swt.widgets.Composite} object.
148 * @param viewPart
149 * a {@link eu.etaxonomy.taxeditor.view.AbstractCdmViewPart}
150 * object.
151 */
152 public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
153 super(parent, viewPart);
154 }
155
156 // START HACK TO MAKE THE DERIVED UNIT FACADE WORK
157 // since we are getting implementations of DerivedUnitBase from the bulk
158 // editor
159 // and not derived unit facade objects,
160
161 /*
162 * (non-Javadoc)
163 *
164 * @see
165 * eu.etaxonomy.taxeditor.editor.view.AbstractCdmDataViewer#setInput(java
166 * .lang.Object)
167 */
168 @Override
169 public void setInput(Object input) {
170 if(input instanceof TreeNode){
171 input = ((TreeNode) input).getValue();
172 }
173 if(input instanceof GbifResponse){
174 input = ((GbifResponse) input).getDerivedUnitFacade();
175 }
176 if (input.getClass().equals(DerivedUnit.class)) {
177 DerivedUnit derivedUnit = (DerivedUnit)input;
178 try {
179 input = DerivedUnitFacade.NewInstance(derivedUnit,
180 PreferencesUtil.getDerivedUnitConfigurator());
181 } catch (DerivedUnitFacadeNotSupportedException e) {
182 AbstractUtility.error(getClass(), e);
183 }
184 }
185 else if(input instanceof FieldUnit){
186 input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
187 }
188 super.setInput(input);
189 }
190
191 @Override
192 protected void markViewPartDirty() {
193 if (getInput() instanceof DerivedUnitFacade) {
194 DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
195 if(facade.innerDerivedUnit()!=null){
196 getViewPart().changed(facade.innerDerivedUnit());
197 }
198 else if(facade.innerFieldUnit()!=null){
199 getViewPart().changed(facade.innerFieldUnit());
200 }
201 }
202 else{
203 super.markViewPartDirty();
204 }
205 }
206
207 // END HACK TO MAKE THE DERIVED UNIT FACADE WORK
208
209 /*
210 * (non-Javadoc)
211 *
212 * @see org.eclipse.jface.viewers.Viewer#refresh()
213 */
214 /** {@inheritDoc} */
215 @Override
216 protected void showParts() {
217 // FIXME (CM) : Need to clean out this code.
218 // Too much type checking to decide which detail view to display.
219 // Need to build in a mechanism where navigators / editors are 'aware'
220 // of the corresponding detail viewer.
221 Object input = getInput();
222
223 destroySections();
224 if (input instanceof TaxonBase) {
225 createTaxonSections(rootElement);
226
227 } else if (input instanceof NonViralName) {
228 createNameSections(rootElement);
229
230 } else if (input instanceof Reference) {
231 createReferenceSections(rootElement);
232
233 } else if (input instanceof Team) {
234 createTeamDetailSection(rootElement);
235
236 } else if (input instanceof Person) {
237 createPersonDetailSection(rootElement);
238
239 } else if (input instanceof TeamOrPersonBase) {
240 createTeamOrPersonBaseDetailSection(rootElement);
241
242 } else if (input instanceof DescriptionBase) {
243 if(input instanceof SpecimenDescription){
244 //TODO: add more sections to DetailsView for SpecimenDescription
245 createSpecimenDescriptionSection(rootElement);
246 }
247 else{
248 Set<Marker> descriptionMarkers = ((DescriptionBase) input).getMarkers();
249 MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
250 UsageTermCollection.uuidUseMarkerType);
251 Boolean isUseDescription = false;
252 for (Marker marker : descriptionMarkers) {
253 if (marker.getMarkerType().equals(useMarkertype)) {
254 isUseDescription = true;
255 }
256 }
257 if (((DescriptionBase) input).isImageGallery()) {
258 createImageGallerySection(rootElement);
259
260 } else if (isUseDescription) {
261 createUseDescriptionSection(rootElement);
262 } else {
263 createDescriptionSection(rootElement);
264
265 }
266 }
267 } else if (input instanceof DescriptionElementBase) {
268 Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
269 MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
270 UsageTermCollection.uuidUseMarkerType);
271 Boolean isUseDescription = false;
272 for (Marker marker : descriptionMarkers) {
273 if (marker.getMarkerType().equals(useMarkertype)) {
274 isUseDescription = true;
275 }
276 }
277
278 if (isUseDescription == true && input instanceof CategoricalData) {
279 createUseRecordSection(rootElement);
280 } else {
281 createDescriptionElementSection(rootElement);
282 }
283
284 } else if (input instanceof Media) {
285 createMediaElementSection(rootElement);
286
287 } else if (input instanceof DerivedUnitFacade) {
288 if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
289 createFieldUnitSection(rootElement);
290 }
291 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
292 createDerivedUnitBaseElementSection(rootElement);
293 }
294 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
295 createTissueSampleSection(rootElement);
296 }
297 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
298 createSpecimenScanSection(rootElement);
299 }
300 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
301 createLivingPlantPhotoSection(rootElement);
302 }
303 else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
304 createMediaSpecimenSection(rootElement);
305 }
306 else{
307 createDerivedUnitBaseElementSection(rootElement);
308 }
309 } else if (input instanceof DnaSample){
310 createDnaSampleSection(rootElement);
311 } else if (input instanceof MediaSpecimen){
312 createMediaSpecimenSection(rootElement);
313 }
314 else if(input instanceof Amplification){
315 createAmplificationSection(rootElement);
316 }
317 else if(input instanceof Sequence){
318 createSequenceSection(rootElement);
319 }
320 else if(input instanceof SingleRead){
321 createSingleReadSection(rootElement);
322 }
323 else if (input instanceof FeatureNodeContainer) {
324 createFeatureDistributionSection(rootElement);
325
326 }else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
327 createPolytomousKeyNodeSection(rootElement);
328 } else if (input instanceof User) {
329 createUserSection(rootElement);
330 } else if (input instanceof Group) {
331 createGroupSection(rootElement);
332 } else if (input instanceof TaxonRelationship) {
333 createTaxonRelationshipSection(rootElement);
334 } else if (input instanceof TermVocabulary) {
335 createTermVocabularySection(rootElement);
336 } else if (input instanceof DefinedTermBase) {
337 createDefinedTermSection(rootElement);
338 }
339 else {
340 createEmptySection(rootElement);
341 }
342 layout();
343 }
344
345
346 /**
347 * @param rootElement
348 */
349 private void createEmptySection(RootElement parent) {
350 destroySections();
351
352 EmptySection emptySection = formFactory.createEmptySection(formFactory, parent, SWT.NONE);
353
354 addPart(emptySection);
355 }
356
357 /**
358 * @param rootElement
359 */
360 private void createGroupSection(RootElement parent) {
361 destroySections();
362
363 GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE| ExpandableComposite.EXPANDED);
364 MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
365 GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
366
367 addPart(groupDetailSection);
368 addPart(memberDetailSection);
369 addPart(grantedAuthorityDetailSection);
370 }
371
372 /*
373 * (non-Javadoc)
374 *
375 * @see org.eclipse.jface.viewers.Viewer#getSelection()
376 */
377 /** {@inheritDoc} */
378 @Override
379 public ISelection getSelection() {
380 return selection;
381 }
382
383 /*
384 * (non-Javadoc)
385 *
386 * @see
387 * org.eclipse.jface.viewers.Viewer#setSelection(org.eclipse.jface.viewers
388 * .ISelection, boolean)
389 */
390 /** {@inheritDoc} */
391 @Override
392 public void setSelection(ISelection selection, boolean reveal) {
393 this.selection = selection;
394 SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
395 fireSelectionChanged(selectionChangedEvent);
396 }
397
398 /**
399 * createTaxonSections(RootElement parent)
400 *
401 * @param parent
402 */
403 private void createTaxonSections(RootElement parent) {
404 destroySections();
405
406 TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
407 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
408 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
409
410 NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this,
411 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
412 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
413
414 NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
415 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
416 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
417
418 NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
419 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
420 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
421
422 //TODO RL
423 if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
424 ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
425 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
426
427 TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
428 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
429
430 NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
431 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
432
433 addPart(protologSection);
434 addPart(typeDesignationSection);
435 addPart(nameRelationshipSection);
436 }
437
438 ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
439 ExpandableComposite.EXPANDED | ExpandableComposite.EXPANDED);
440
441 addPart(taxonBaseDetailSection);
442 addPart(nonViralNameSection);
443 addPart(nomenclaturalStatusSection);
444 addPart(parsingMessagesSection);
445 addPart(referenceDetailSection);
446 }
447
448 /**
449 * createNameSections
450 *
451 * @param parent
452 */
453 private void createNameSections(RootElement parent) {
454 destroySections();
455 NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this,
456 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
457 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
458
459 NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
460 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
461 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
462
463 NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
464 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
465 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
466
467 addPart(nonViralNameSection);
468 addPart(nomenclaturalStatusSection);
469 addPart(referenceDetailSection);
470 //TODO RL
471 if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
472 ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
473 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
474
475 TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
476 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
477
478 NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
479 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
480 addPart(protologSection);
481 addPart(typeDesignationSection);
482 addPart(nameRelationshipSection);
483 }
484 }
485
486 /**
487 * createReferenceSections
488 *
489 * @param parent
490 */
491 private void createReferenceSections(RootElement parent) {
492 destroySections();
493
494 ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
495 ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
496
497 addPart(referenceDetailSection);
498 }
499
500 /**
501 * createTeamOrPersonBaseDetailSection
502 *
503 * @param parent
504 */
505 private void createTeamOrPersonBaseDetailSection(RootElement parent) {
506 destroySections();
507 TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
508
509 addPart(teamOrPersonBaseDetailSection);
510 }
511
512 /**
513 * createTeamDetailSection
514 *
515 * @param parent
516 */
517 private void createTeamDetailSection(RootElement parent) {
518 destroySections();
519 TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
520
521 addPart(teamDetailSection);
522 }
523
524 /**
525 * createPersonDetailSection
526 *
527 * @param parent
528 */
529 private void createPersonDetailSection(RootElement parent) {
530 destroySections();
531 PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
532 addPart(personDetailSection);
533 }
534
535 /**
536 * createDescriptionElementSection
537 *
538 * @param parent
539 */
540 private void createDescriptionElementSection(RootElement parent) {
541 destroySections();
542
543 DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
544
545 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
546
547 DescriptionElementSourceSection descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
548
549 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
550
551 DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
552
553 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
554
555 addPart(descriptionElementDetailSection);
556 addPart(descriptionElementSourceSection);
557 addPart(descriptionElementMediaSection);
558 }
559
560 /**
561 * createDescriptionSection
562 *
563 * @param parent
564 */
565 private void createDescriptionSection(RootElement parent) {
566 destroySections();
567 DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
568
569 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
570
571 NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
572
573 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
574
575 DescribedSpecimenSection describedSpecimenSection = formFactory.createDescribedSpecimenSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
576
577 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
578
579 // DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
580 // .createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
581 // getConversationHolder(), parent, Section.TWISTIE);
582 //
583 // formFactory.createHorizontalSeparator(parent, SWT.BORDER);
584
585 ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
586
587 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
588
589 addPart(descriptionDetailSection);
590 addPart(naturalLanguageSection);
591 addPart(describedSpecimenSection);
592 // addPart(descriptionSourceSection);
593 addPart(scopeSection);
594 }
595
596 /**
597 * createDescriptionSection
598 *
599 * @param parent
600 */
601 private void createSpecimenDescriptionSection(RootElement parent) {
602 destroySections();
603 DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
604 addPart(descriptionDetailSection);
605 }
606
607 /**
608 * Creates the use Description section
609 *
610 * @param parent
611 */
612 private void createUseDescriptionSection(RootElement parent) {
613 destroySections();
614 DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
615
616 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
617
618 DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
619
620 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
621
622 addPart(descriptionDetailSection);
623 addPart(descriptionSourceSection);
624
625 }
626
627
628 /**
629 * @param rootElement
630 */
631 private void createImageGallerySection(RootElement parent) {
632 destroySections();
633 DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
634
635 addPart(descriptionDetailSection);
636 }
637
638 /**
639 * createMediaElementSection
640 *
641 * @param parent
642 */
643
644 private void createMediaElementSection(RootElement parent) {
645 destroySections();
646
647 MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
648
649 addPart(mediaDetailSection);
650 }
651
652 /**
653 * createDerivedUnitBaseElementSection
654 *
655 * @param parent
656 */
657 private void createDerivedUnitBaseElementSection(RootElement parent) {
658 destroySections();
659
660 //different order of sections (Specimen Details as second section and expanded)
661 if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
662 DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
663 addPart(derivedUnitGeneralDetailSection);
664
665 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
666
667 DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
668 addPart(derivedUnitBaseDetailSection);
669
670 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
671
672 OriginalLabelDataSection originalLabelDataSection = formFactory.createOriginalLabelDataSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
673 addPart(originalLabelDataSection);
674
675 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
676
677 GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
678 addPart(gatheringEventDetailSection);
679
680 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
681
682 FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
683 addPart(fieldUnitDetailSection);
684 }
685 else{
686 DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
687 addPart(derivedUnitGeneralDetailSection);
688
689 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
690
691 GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
692 addPart(gatheringEventDetailSection);
693
694 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
695
696 FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
697 addPart(fieldUnitDetailSection);
698
699 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
700
701 DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
702 addPart(derivedUnitBaseDetailSection);
703
704 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
705
706 DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
707 addPart(determinationDetailSection);
708 }
709
710 }
711
712 private void createFieldUnitSection(RootElement parent) {
713 destroySections();
714
715 FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
716
717 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
718
719 GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
720
721 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
722
723 FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
724
725 addPart(fielUnitGeneralDetailSection);
726 addPart(gatheringEventDetailSection);
727 addPart(fieldUnitDetailSection);
728
729 if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
730 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
731 DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
732 addPart(determinationDetailSection);
733 }
734 }
735
736 private void createPreservedSpecimenSpecimenSection(RootElement parent) {
737 destroySections();
738
739 PreservedSpecimenGeneralDetailSection section = formFactory.createPreservedSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
740
741 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
742
743 PreservedSpecimenDetailSection derivedUnitBaseDetailSection = formFactory.createPreservedSpecimenDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
744
745 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
746
747 PreservedSpecimenDeterminationDetailSection determinationDetailSection = formFactory.createPreservedSpecimenDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
748
749 addPart(section);
750 addPart(derivedUnitBaseDetailSection);
751 addPart(determinationDetailSection);
752 }
753
754 private void createTissueSampleSection(RootElement parent) {
755 destroySections();
756
757 TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
758
759 addPart(section);
760 }
761
762 private void createDnaSampleSection(RootElement parent) {
763 destroySections();
764
765 DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
766
767 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
768
769 DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
770
771 addPart(section);
772 addPart(qualitySection);
773 }
774
775 private void createAmplificationSection(RootElement parent) {
776 destroySections();
777 AmplificationGeneralDetailSection generalSection = formFactory.createAmplificationGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
778
779 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
780
781 AmplificationPrimerDetailSection primerSection = formFactory.createAmplificationPrimerDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
782
783 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
784
785 AmplificationCloningDetailSection cloningSection = formFactory.createAmplificationCloningDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
786
787 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
788
789 AmplificationGelPhotoCollectionDetailSection gelPhotoSection = formFactory.createAmplificationGelPhotoCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
790
791
792 addPart(generalSection);
793 addPart(primerSection);
794 addPart(cloningSection);
795 addPart(gelPhotoSection);
796 }
797
798 private void createSequenceSection(RootElement parent) {
799 destroySections();
800
801 SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
802
803 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
804
805 SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
806
807 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
808
809 SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
810
811
812 addPart(section);
813 addPart(referenceSection);
814 addPart(contigFileSection);
815 }
816
817 private void createSingleReadSection(RootElement parent) {
818 destroySections();
819
820 SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
821
822 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
823
824 SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
825
826 addPart(section);
827 addPart(pherogramSection);
828 }
829
830 private void createSpecimenScanSection(RootElement parent) {
831 destroySections();
832 SpecimenScanGeneralDetailSection section = formFactory.createSpecimenScanGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
833
834 addPart(section);
835 }
836
837 private void createLivingPlantPhotoSection(RootElement parent) {
838 destroySections();
839 LivingPlantPhotoGeneralDetailSection section = formFactory.createLivingPlantPhotoGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
840
841 addPart(section);
842 }
843
844 private void createMediaSpecimenSection(RootElement parent) {
845 destroySections();
846 MediaSpecimenGeneralDetailSection section = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
847
848 addPart(section);
849 }
850
851
852
853 /**
854 * @param rootElement
855 */
856 private void createFeatureDistributionSection(RootElement parent) {
857 destroySections();
858
859 FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
860
861 addPart(featureDistributionSection);
862 }
863
864 /**
865 * createPolytomousKeyNodeSection
866 *
867 * @param parent
868 */
869 private void createPolytomousKeyNodeSection(RootElement parent) {
870 destroySections();
871
872 PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.COMPACT);
873
874 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
875
876 PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
877
878 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
879
880 TaxonomicScopeSection taxonomicScopeSection = formFactory.createTaxonomicScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.COMPACT);
881
882 addPart(polytomousKeyDetailSection);
883 addPart(polytomousKeyNodeDetailSection);
884 addPart(taxonomicScopeSection);
885
886 }
887
888 /**
889 * create the UseRecordSection
890 *
891 * @param parent
892 */
893 private void createUseRecordSection(RootElement parent) {
894 destroySections();
895
896 UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
897
898 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
899
900 addPart(descriptionUseRecordSection);
901
902
903 }
904
905 /**
906 * createUserSection
907 *
908 * @param parent
909 */
910 private void createUserSection(RootElement parent) {
911 destroySections();
912
913 UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
914
915 GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
916
917 addPart(userDetailSection);
918 addPart(groupByUserDetailSection);
919 }
920
921 /**
922 * createTaxonRelationshipSection
923 *
924 * @param parent
925 */
926 private void createTaxonRelationshipSection(RootElement parent) {
927 destroySections();
928
929 TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
930
931 ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
932 addPart(taxonRelationshipDetailSection);
933 addPart(referencedEntityBaseDetailSection);
934 }
935
936 /**
937 * @param rootElement
938 */
939 private void createTermVocabularySection(RootElement parent) {
940 destroySections();
941
942 TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
943 addPart(termVocabularyDetailSection);
944 }
945
946 /**
947 * createDefinedTermSection
948 *
949 * @param parent
950 */
951 private void createDefinedTermSection(RootElement parent) {
952 destroySections();
953
954 AbstractFormSection definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
955 addPart(definedTermDetailSection);
956 }
957
958 }