3 * Copyright (C) 2015 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.operation
;
12 import java
.util
.ArrayList
;
13 import java
.util
.Iterator
;
14 import java
.util
.List
;
16 import java
.util
.UUID
;
18 import org
.apache
.log4j
.Logger
;
19 import org
.eclipse
.core
.commands
.ExecutionException
;
20 import org
.junit
.Assert
;
21 import org
.junit
.Test
;
22 import org
.unitils
.dbunit
.annotation
.DataSet
;
24 import eu
.etaxonomy
.cdm
.api
.service
.IClassificationService
;
25 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonNodeService
;
26 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
27 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
28 import eu
.etaxonomy
.cdm
.model
.name
.BotanicalName
;
29 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
30 import eu
.etaxonomy
.cdm
.model
.name
.NonViralName
;
31 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
32 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
33 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
34 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonNode
;
35 import eu
.etaxonomy
.taxeditor
.editor
.name
.operation
.CreateSynonymInExistingHomotypicalGroupOperation
;
44 public class TaxonNameEditorTest
extends BaseOperationTest
{
46 private static final Logger logger
= Logger
.getLogger(TaxonNameEditorTest
.class);
48 ITaxonNodeService taxonNodeService
= getRemoteApplicationController().getTaxonNodeService();
49 ITaxonService taxonService
= getRemoteApplicationController().getTaxonService();
50 IClassificationService classificationService
= getRemoteApplicationController().getClassificationService();
52 Language english
= Language
.getLanguageFromUuid(Language
.uuidEnglish
);
56 public void testAddHomotypicSynonym() throws ExecutionException
{
57 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
59 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
60 Taxon taxon
= taxonNode
.getTaxon();
61 HomotypicalGroup group
= taxon
.getHomotypicGroup();
62 BotanicalName newSynonymName
= BotanicalName
.NewInstance(null);
63 newSynonymName
.setTitleCache("New Synonym", true);
64 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
65 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
67 operation
.execute(monitor
, info
);
68 taxonNodeService
.merge(taxonNode
);
69 Assert
.assertEquals(taxon
.getHomotypicGroup().getTypifiedNames().size(), 2);
70 Assert
.assertEquals(taxon
.getSynonyms().size(), 1);
71 Iterator
<Synonym
> synonymItr
= taxon
.getSynonyms().iterator();
72 Synonym synonym
= synonymItr
.next();
73 Assert
.assertTrue(taxon
.getHomotypicGroup().getTypifiedNames().contains(synonym
.getName()));
77 public void addHeterotypicSynonym() throws ExecutionException
{
78 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
80 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
81 Taxon taxon
= taxonNode
.getTaxon();
82 HomotypicalGroup group
= taxon
.getHomotypicGroup();
83 BotanicalName newSynonymName
= BotanicalName
.NewInstance(null);
84 newSynonymName
.setTitleCache("New Synonym", true);
85 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
86 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
88 operation
.execute(monitor
, info
);
89 taxonNodeService
.merge(taxonNode
);
95 public void addDeleteAddHomotypicSynonym() throws ExecutionException
{
96 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
98 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
99 Taxon taxon
= taxonNode
.getTaxon();
100 HomotypicalGroup group
= taxon
.getHomotypicGroup();
101 BotanicalName newSynonymName
= BotanicalName
.NewInstance(null);
102 newSynonymName
.setTitleCache("New Synonym", true);
103 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
104 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
106 operation
.execute(monitor
, info
);
107 taxonNodeService
.merge(taxonNode
);
108 Assert
.assertEquals(taxon
.getHomotypicGroup().getTypifiedNames().size(), 2);
110 Set
<Synonym
> synonyms
= taxon
.getSynonyms();
111 for(Synonym synonym
: synonyms
) {
112 taxonService
.deleteSynonym(synonym
.getUuid(), taxon
.getUuid(), null);
115 taxonNodeService
.merge(taxonNode
);
117 newSynonymName
= BotanicalName
.NewInstance(null);
118 newSynonymName
.setTitleCache("Another New Synonym", true);
119 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
120 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
122 operation
.execute(monitor
, info
);
123 taxonNodeService
.merge(taxonNode
);
127 public void swapSynonymWithAcceptedTaxon() throws ExecutionException
{
128 List
<TaxonNode
> rootEntities
= new ArrayList
<TaxonNode
>();
129 UUID taxonNodeUuid
= UUID
.fromString("d425a971-1abe-4895-9e1f-1e5c8ff1c84c");
130 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
131 rootEntities
.add(taxonNode
);
133 UUID taxonUuid
= UUID
.fromString("9763e5f0-6cd4-4d96-b8a4-4420854f7727");
134 Taxon taxon
= (Taxon
)taxonService
.load(taxonUuid
);
135 TaxonNameBase taxonName
= taxon
.getName();
137 UUID synonymUuid
= UUID
.fromString("1eb173bd-b174-4162-8ff5-5136d8f1e746");
138 Synonym synonym
= (Synonym
)taxonService
.load(synonymUuid
);
139 TaxonNameBase synonymName
= synonym
.getName();
141 taxonService
.swapSynonymAndAcceptedTaxon(synonym
.getUuid(), taxon
.getUuid());
143 Assert
.assertEquals(taxonName
, synonym
.getName());
144 Assert
.assertEquals(synonymName
, taxon
.getName());
148 public void addTaxon() {
149 NonViralName taxonName
= NonViralName
.NewInstance(null);
150 Taxon taxon
= Taxon
.NewInstance(taxonName
, null);
151 taxonService
.merge(taxon
);