eu.etaxonomy.taxeditor.molecular/plugin.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <?eclipse version="3.4"?>
   3 <plugin>
   4    <extension
   5          point="org.eclipse.ui.editors">
   6       <editor
   7             class="eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor"
   8             default="false"
   9             id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor"
  10             name="%editor.ALIGNMENT_EDITOR">
  11       </editor>
  12    </extension>
  13       <extension
  14             point="org.eclipse.ui.views">
  15          <view
  16                allowMultiple="true"
  17                class="eu.etaxonomy.taxeditor.molecular.editor.PherogramViewPart"
  18                id="eu.etaxonomy.taxeditor.molecular.PherogramView"
  19                name="%view.PHEROGRAM_VIEW"
  20                restorable="true">
  21          </view>
  22       </extension>
  23       <extension
  24             point="org.eclipse.ui.commands">
  25          <command
  26                id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
  27                name="%command.name.CUT_PHEROGRAM_LEFT">
  28          </command>
  29          <command
  30                id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
  31                name="%command.name.CUT_PHEROGRAM_RIGHT">
  32          </command>
  33          <command
  34                id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows"
  35                name="%command.name.REVERSE_COMPLEMENT_SELECTED_ROWS">
  36          </command>
  37          <command
  38                id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus"
  39                name="%command.name.CREATE_CONSENUS_SEQUENCE">
  40          </command>
  41          <command
  42                id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus"
  43                name="%command.name.UPDATE_CONSENSUS_SEQUENCE">
  44          </command>
  45          <command
  46                id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities"
  47                name="%command.name.TOGGLE_SHOW_PROBABILITY_VALUES">
  48          </command>
  49          <command
  50                id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines"
  51                name="%command.name.TOGGLE_SHOW_BASE_CALL_LINES">
  52          </command>
  53          <command
  54                id="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput"
  55                name="%command.name.CHANGE_QUALITY_OUTPUT">
  56          </command>
  57          <command
  58                id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
  59                name="%command.name.LOAD_PHEROGRAM">
  60          </command>
  61          <command
  62                id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite"
  63                name="%command.name.TOGGLE_INSERT_OVERWRITE">
  64          </command>
  65          <command
  66                id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion"
  67                name="%command.name.TOGGLE_LEFT_RIGHT_INSERTION">
  68          </command>
  69       </extension>
  70       <extension
  71             point="org.eclipse.ui.menus">
  72          <menuContribution
  73                locationURI="toolbar:org.eclipse.ui.main.toolbar?after=eu.etaxonomy.taxeditor.navigation.search.toolbar">
  74             <toolbar
  75                   id="eu.etaxonomy.taxeditor.molecular.alignmentToolbar">
  76                <command
  77                      commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite"
  78                      label="%command.TOGGLE_INSERT_OVERWRITE"
  79                      style="push">
  80                   <visibleWhen
  81                         checkEnabled="true">
  82                      <with
  83                            variable="activePartId">
  84                         <equals
  85                               value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
  86                         </equals>
  87                      </with>
  88                   </visibleWhen>
  89                </command>
  90                <command
  91                      commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion"
  92                      icon="icons/pherogram-insert-left-16x16.png"
  93                      style="push">
  94                   <visibleWhen
  95                         checkEnabled="true">
  96                      <with
  97                            variable="activePartId">
  98                         <equals
  99                               value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
 100                         </equals>
 101                      </with>
 102                   </visibleWhen>
 103                </command>
 104             </toolbar>
 105          </menuContribution>
 106          <menuContribution
 107                allPopups="false"
 108                locationURI="menu:org.eclipse.ui.main.menu">
 109             <menu
 110                   label="%menu.ALIGNMENT_EDITOR">
 111                <command
 112                      commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
 113                      style="push">
 114                </command>
 115                <command
 116                      commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
 117                      id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft"
 118                      name="Cut pherogram left">
 119                </command>
 120                <command
 121                      commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
 122                      id="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight"
 123                      style="push">
 124                </command>
 125                <command
 126                      commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows"
 127                      mnemonic="r"
 128                      style="push">
 129                </command>
 130                <command
 131                      commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus"
 132                      style="push">
 133                </command>
 134                <command
 135                      commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus"
 136                      style="push">
 137                </command>
 138                <visibleWhen
 139                      checkEnabled="true">
 140                   <with
 141                         variable="activePartId">
 142                      <equals
 143                            value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
 144                      </equals>
 145                   </with>
 146                </visibleWhen>
 147             </menu>
 148             <menu
 149                   label="%menu.label.PHEROGRAM_VIEW">
 150                <command
 151                      commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput"
 152                      style="push">
 153                </command>
 154                <command
 155                      commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities"
 156                      style="push">
 157                </command>
 158                <command
 159                      commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines"
 160                      style="push">
 161                </command>
 162                <visibleWhen
 163                      checkEnabled="true">
 164                   <with
 165                         variable="activePartId">
 166                      <equals
 167                            value="eu.etaxonomy.taxeditor.molecular.PherogramView">
 168                      </equals>
 169                   </with>
 170                </visibleWhen>
 171             </menu>
 172          </menuContribution>
 173       </extension>
 174       <extension
 175             point="org.eclipse.ui.handlers">
 176          <handler
 177                class="eu.etaxonomy.taxeditor.molecular.handler.LoadPherogramHandler"
 178                commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram">
 179             <activeWhen>
 180                <with
 181                      variable="activePartId">
 182                   <equals
 183                         value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
 184                   </equals>
 185                </with>
 186             </activeWhen>
 187          </handler>
 188          <handler
 189                class="eu.etaxonomy.taxeditor.molecular.handler.ToggleInsertOverwriteHandler"
 190                commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleInsertOverwrite">
 191          </handler>
 192          <handler
 193                class="eu.etaxonomy.taxeditor.molecular.handler.ToggleLeftRightInsertionHandler"
 194                commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.toggleLeftRightInsertion">
 195          </handler>
 196          <handler
 197                class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramLeftHandler"
 198                commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramLeft">
 199          </handler>
 200          <handler
 201                class="eu.etaxonomy.taxeditor.molecular.handler.CutPherogramRightHandler"
 202                commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.cutPherogramRight">
 203          </handler>
 204          <handler
 205                class="eu.etaxonomy.taxeditor.molecular.handler.ReverseComplementHandler"
 206                commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.reverseComplementRows">
 207          </handler>
 208          <handler
 209                class="eu.etaxonomy.taxeditor.molecular.handler.CreateConsensusSequenceHandler"
 210                commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.createConsensus">
 211          </handler>
 212          <handler
 213                class="eu.etaxonomy.taxeditor.molecular.handler.UpdateConsensusSequenceHandler"
 214                commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.updateConsensus">
 215          </handler>
 216          <handler
 217                class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramProbabilitiesHandler"
 218                commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowProbabilities">
 219          </handler>
 220          <handler
 221                class="eu.etaxonomy.taxeditor.molecular.handler.ToggleShowPherogramBaseCallLinesHandler"
 222                commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.toggleShowBaseCallLines">
 223          </handler>
 224          <handler
 225                class="eu.etaxonomy.taxeditor.molecular.handler.ChangePherogramQualityOutputType"
 226                commandId="eu.etaxonomy.taxeditor.molecular.pherogramComponent.changeQualityOutput">
 227          </handler>
 228          <handler
 229                class="eu.etaxonomy.taxeditor.molecular.handler.AlignmentEditorCopyHandler"
 230                commandId="org.eclipse.ui.edit.copy">
 231             <activeWhen>
 232                <with
 233                      variable="activePartId">
 234                   <equals
 235                         value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
 236                   </equals>
 237                </with>
 238             </activeWhen>
 239          </handler>
 240          <handler
 241                class="eu.etaxonomy.taxeditor.molecular.handler.AlignmentEditorCutHandler"
 242                commandId="org.eclipse.ui.edit.cut">
 243             <activeWhen>
 244                <with
 245                      variable="activePartId">
 246                   <equals
 247                         value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
 248                   </equals>
 249                </with>
 250             </activeWhen>
 251          </handler>
 252          <handler
 253                class="eu.etaxonomy.taxeditor.molecular.handler.AlignmentEditorPasteHandler"
 254                commandId="org.eclipse.ui.edit.paste">
 255             <activeWhen>
 256                <with
 257                      variable="activePartId">
 258                   <equals
 259                         value="eu.etaxonomy.taxeditor.molecular.AlignmentEditor">
 260                   </equals>
 261                </with>
 262             </activeWhen>
 263          </handler>
 264       </extension>
 265       <extension
 266             point="org.eclipse.ui.bindings">
 267          <scheme
 268                description="%scheme.description"
 269                id="eu.etaxonomy.taxeditor.bindings.scheme.default"
 270                name="%scheme.name">
 271          </scheme>
 272          <key
 273                commandId="eu.etaxonomy.taxeditor.molecular.AlignmentEditor.loadPherogram"
 274                schemeId="eu.etaxonomy.taxeditor.bindings.scheme.default"
 275                sequence="M1+O">
 276          </key>
 277       </extension>
 278       <extension
 279             id="id1"
 280             point="org.eclipse.e4.workbench.model">
 281          <fragment
 282                apply="always"
 283                uri="fragment.e4xmi">
 284          </fragment>
 285       </extension>
 286
 287 </plugin>