eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/detail/DetailsViewer.java

   1
   2 // $Id$
   3 /**
   4  * Copyright (C) 2011 EDIT
   5  * European Distributed Institute of Taxonomy
   6  * http://www.e-taxonomy.eu
   7  *
   8  * The contents of this file are subject to the Mozilla Public License Version 1.1
   9  * See LICENSE.TXT at the top of this package for the full license terms.
  10  */
  11
  12 package eu.etaxonomy.taxeditor.view.detail;
  13
  14 import java.util.Set;
  15
  16 import org.eclipse.jface.viewers.ISelection;
  17 import org.eclipse.jface.viewers.SelectionChangedEvent;
  18 import org.eclipse.jface.viewers.TreeNode;
  19 import org.eclipse.swt.SWT;
  20 import org.eclipse.swt.widgets.Composite;
  21 import org.eclipse.ui.forms.widgets.ExpandableComposite;
  22
  23 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
  24 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
  25 import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
  26 import eu.etaxonomy.cdm.model.agent.Person;
  27 import eu.etaxonomy.cdm.model.agent.Team;
  28 import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
  29 import eu.etaxonomy.cdm.model.common.DefinedTermBase;
  30 import eu.etaxonomy.cdm.model.common.Group;
  31 import eu.etaxonomy.cdm.model.common.Marker;
  32 import eu.etaxonomy.cdm.model.common.TermVocabulary;
  33 import eu.etaxonomy.cdm.model.common.User;
  34 import eu.etaxonomy.cdm.model.description.CategoricalData;
  35 import eu.etaxonomy.cdm.model.description.DescriptionBase;
  36 import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
  37 import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
  38 import eu.etaxonomy.cdm.model.description.SpecimenDescription;
  39 import eu.etaxonomy.cdm.model.media.Media;
  40 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  41 import eu.etaxonomy.cdm.model.molecular.Sequence;
  42 import eu.etaxonomy.cdm.model.molecular.SingleRead;
  43 import eu.etaxonomy.cdm.model.name.NonViralName;
  44 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
  45 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
  46 import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
  47 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
  48 import eu.etaxonomy.cdm.model.reference.Reference;
  49 import eu.etaxonomy.cdm.model.taxon.TaxonBase;
  50 import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
  51 import eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap;
  52 import eu.etaxonomy.taxeditor.model.AbstractUtility;
  53 import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
  54 import eu.etaxonomy.taxeditor.model.IDerivedUnitFacadePart;
  55 import eu.etaxonomy.taxeditor.model.MessagingUtils;
  56 import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
  57 import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
  58 import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
  59 import eu.etaxonomy.taxeditor.store.UsageTermCollection;
  60 import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
  61 import eu.etaxonomy.taxeditor.ui.element.RootElement;
  62 import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
  63 import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
  64 import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
  65 import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
  66 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
  67 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
  68 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
  69 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
  70 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
  71 import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
  72 import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
  73 import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
  74 import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
  75 import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
  76 import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
  77 import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
  78 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
  79 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
  80 import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
  81 import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
  82 import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
  83 import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
  84 import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
  85 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
  86 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
  87 import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
  88 import eu.etaxonomy.taxeditor.ui.section.occurrence.EmptySection;
  89 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
  90 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
  91 import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
  92 import eu.etaxonomy.taxeditor.ui.section.occurrence.association.DerivedUnitTypeDesignationSection;
  93 import eu.etaxonomy.taxeditor.ui.section.occurrence.association.TaxonAssociationDetailSection;
  94 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
  95 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
  96 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSamplePreparationPreservationSection;
  97 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SampleDesignationDetailSection;
  98 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
  99 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
 100 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
 101 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
 102 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
 103 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
 104 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
 105 import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
 106 import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
 107 import eu.etaxonomy.taxeditor.ui.section.supplemental.RightsSection;
 108 import eu.etaxonomy.taxeditor.ui.section.supplemental.identifier.DerivedUnitFacadeIdentifierSection;
 109 import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
 110 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
 111 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
 112 import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
 113 import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
 114 import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
 115 import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
 116 import eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer;
 117 import eu.etaxonomy.taxeditor.view.AbstractCdmViewPart;
 118
 119 /**
 120  *
 121  * The DetailsViewer handles the content of the details view (
 122  * {@link DetailsViewPart}).<br>
 123  * Depending on the type of the selected element the section of the details view
 124  * are created.
 125  *
 126  * @author n.hoffmann
 127  * @created Feb 12, 2010
 128  * @version 1.0
 129  */
 130 public class DetailsViewer extends AbstractCdmDataViewer {
 131
 132     private ISelection selection;
 133
 134     public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
 135         super(parent, viewPart);
 136     }
 137
 138     // START HACK TO MAKE THE DERIVED UNIT FACADE WORK
 139     // since we are getting implementations of DerivedUnitBase from the bulk
 140     // editor
 141     // and not derived unit facade objects,
 142
 143     @Override
 144     public void setInput(Object input) {
 145         if(input instanceof TreeNode){
 146             input = ((TreeNode) input).getValue();
 147         }
 148         if(input instanceof GbifResponse){
 149             input = ((GbifResponse) input).getDerivedUnitFacade();
 150         }
 151         if (input.getClass().equals(DerivedUnit.class)) {
 152             DerivedUnit derivedUnit = (DerivedUnit)input;
 153             try {
 154                 input = DerivedUnitFacade.NewInstance(derivedUnit,
 155                         PreferencesUtil.getDerivedUnitConfigurator());
 156             } catch (DerivedUnitFacadeNotSupportedException e) {
 157 //                MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
 158             }
 159         }
 160         else if(input instanceof FieldUnit){
 161             input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
 162         }
 163         super.setInput(input);
 164     }
 165
 166     @Override
 167     protected void markViewPartDirty() {
 168         if (getInput() instanceof DerivedUnitFacade) {
 169             DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
 170             if(facade.innerDerivedUnit()!=null){
 171                 getViewPart().changed(facade.innerDerivedUnit());
 172             }
 173             else if(facade.innerFieldUnit()!=null){
 174                 getViewPart().changed(facade.innerFieldUnit());
 175             }
 176         }
 177         else{
 178             super.markViewPartDirty();
 179         }
 180     }
 181
 182     // END HACK TO MAKE THE DERIVED UNIT FACADE WORK
 183
 184
 185     /** {@inheritDoc} */
 186     @Override
 187     protected void showParts() {
 188         // FIXME (CM) : Need to clean out this code.
 189         // Too much type checking to decide which detail view to display.
 190         // Need to build in a mechanism where navigators / editors are 'aware'
 191         // of the corresponding detail viewer.
 192         Object input = getInput();
 193
 194         destroySections();
 195         if (input instanceof TaxonBase) {
 196             if(((TaxonBase) input).getName()==null){
 197                 createEmptySection(rootElement);
 198             }
 199             else{
 200                 createTaxonSections(rootElement);
 201             }
 202
 203         } else if (input instanceof NonViralName) {
 204             createNameSections(rootElement);
 205
 206         } else if (input instanceof Reference) {
 207             createReferenceSections(rootElement);
 208
 209         } else if (input instanceof Team) {
 210             createTeamDetailSection(rootElement);
 211
 212         } else if (input instanceof Person) {
 213             createPersonDetailSection(rootElement);
 214
 215         } else if (input instanceof TeamOrPersonBase) {
 216             createTeamOrPersonBaseDetailSection(rootElement);
 217
 218         } else if (input instanceof DescriptionBase) {
 219             if(input instanceof SpecimenDescription){
 220                 //TODO: add more sections to DetailsView for SpecimenDescription
 221                 createSpecimenDescriptionSection(rootElement);
 222             }
 223             else{
 224                 Set<Marker> descriptionMarkers = ((DescriptionBase<?>) input).getMarkers();
 225
 226                 Boolean isUseDescription = false;
 227                 for (Marker marker : descriptionMarkers) {
 228                     if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
 229                         isUseDescription = true;
 230                     }
 231                 }
 232                 if (((DescriptionBase<?>) input).isImageGallery()) {
 233                     createImageGallerySection(rootElement);
 234
 235                 } else if (isUseDescription) {
 236                     createUseDescriptionSection(rootElement);
 237                 } else {
 238                     createDescriptionSection(rootElement);
 239
 240                 }
 241             }
 242         } else if (input instanceof DescriptionElementBase) {
 243             Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
 244
 245             Boolean isUseDescription = false;
 246             for (Marker marker : descriptionMarkers) {
 247                 if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
 248                     isUseDescription = true;
 249                 }
 250             }
 251
 252             if (isUseDescription == true && input instanceof CategoricalData) {
 253                 createUseRecordSection(rootElement);
 254             } else {
 255                 createDescriptionElementSection(rootElement);
 256             }
 257
 258         } else if (input instanceof Media) {
 259             createMediaElementSection(rootElement);
 260
 261         } else if (input instanceof DerivedUnitFacade) {
 262             if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
 263                 if(((DerivedUnitFacade) input).innerFieldUnit()==null){
 264                     MessagingUtils.error(DetailsViewer.class, "FieldUnit of facade is null", null);
 265                 }
 266                 else{
 267                     createFieldUnitSection(rootElement);
 268                 }
 269             }
 270             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
 271                 if(((DerivedUnitFacade) input).innerDerivedUnit()==null){
 272                     MessagingUtils.error(DetailsViewer.class, "DerivedUnit of facade is null", null);
 273                 }
 274                 else{
 275                     createDerivedUnitBaseElementSection(rootElement);
 276                 }
 277             }
 278             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
 279                 //TissueSample should only be created by using it's own class
 280                 //in future using only one class with different SpecimenOrObservationTypes is desired
 281 //                createTissueSampleSection(rootElement);
 282             }
 283             else{
 284                 createDerivedUnitBaseElementSection(rootElement);
 285             }
 286         } else if (input instanceof DnaSample){
 287             DnaSample dnaSample = (DnaSample)input;
 288             if(dnaSample.getRecordBasis()==SpecimenOrObservationType.TissueSample){
 289                 createTissueSampleSection(rootElement);
 290             }
 291             else if(dnaSample.getRecordBasis()==SpecimenOrObservationType.DnaSample){
 292                 createDnaSampleSection(rootElement);
 293             }
 294         } else if (input instanceof MediaSpecimen){
 295             createMediaSpecimenSection(rootElement);
 296         }
 297         else if(input instanceof Sequence){
 298             createSequenceSection(rootElement);
 299         }
 300         else if(input instanceof SingleRead){
 301             createSingleReadSection(rootElement);
 302         }
 303         else if (input instanceof FeatureNodeContainer) {
 304             createFeatureDistributionSection(rootElement);
 305
 306         }else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
 307             createPolytomousKeyNodeSection(rootElement);
 308         } else if (input instanceof User) {
 309             createUserSection(rootElement);
 310         } else if (input instanceof Group) {
 311             createGroupSection(rootElement);
 312         } else if (input instanceof TaxonRelationship) {
 313             createTaxonRelationshipSection(rootElement);
 314         } else if (input instanceof TermVocabulary) {
 315             createTermVocabularySection(rootElement);
 316         } else if (input instanceof DefinedTermBase) {
 317             createDefinedTermSection(rootElement);
 318         }
 319         else {
 320             createEmptySection(rootElement);
 321         }
 322         layout();
 323     }
 324
 325
 326     private void createEmptySection(RootElement parent) {
 327         destroySections();
 328
 329         EmptySection emptySection = formFactory.createEmptySection(formFactory, parent, SWT.NONE);
 330
 331         addPart(emptySection);
 332     }
 333
 334     private void createGroupSection(RootElement parent) {
 335         destroySections();
 336
 337         GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE| ExpandableComposite.EXPANDED);
 338         MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 339         GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 340
 341         addPart(groupDetailSection);
 342         addPart(memberDetailSection);
 343         addPart(grantedAuthorityDetailSection);
 344     }
 345
 346     /** {@inheritDoc} */
 347     @Override
 348     public ISelection getSelection() {
 349         return selection;
 350     }
 351
 352     /** {@inheritDoc} */
 353     @Override
 354     public void setSelection(ISelection selection, boolean reveal) {
 355         this.selection = selection;
 356         if(this.selection!=null){
 357             SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
 358             fireSelectionChanged(selectionChangedEvent);
 359         }
 360     }
 361
 362     private void createTaxonSections(RootElement parent) {
 363         destroySections();
 364
 365         ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
 366                 ExpandableComposite.EXPANDED | ExpandableComposite.EXPANDED);
 367         if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION)){
 368                 TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
 369                 ExpandableComposite.TWISTIE     | ExpandableComposite.EXPANDED);
 370                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 371                 addPart(taxonBaseDetailSection);
 372         }else{
 373                 if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_TAXON)){
 374                     TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
 375                                 ExpandableComposite.TWISTIE     | ExpandableComposite.EXPANDED);
 376                     formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 377
 378                     addPart(taxonBaseDetailSection);
 379                 }
 380         }
 381         NonViralNameDetailSection nonViralNameSection = formFactory
 382                 .createNonViralNameDetailSection(getConversationHolder(), parent, this, true,
 383                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 384         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 385         if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE)){
 386             NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
 387                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 388             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 389             addPart(referenceDetailSection);
 390         }
 391         if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS)){
 392             NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
 393                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 394             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 395
 396             addPart(nomenclaturalStatusSection);
 397
 398         }
 399         //TODO RL
 400         if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)  ){
 401                 if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_PROTOLOGUE)){
 402                         ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 403                         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 404                         addPart(protologSection);
 405                 }
 406
 407                 if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION)){
 408                         TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 409                         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 410                         addPart(typeDesignationSection);
 411                 }
 412
 413                 if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP)){
 414                         NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 415                         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 416                         addPart(nameRelationshipSection);
 417                 }
 418         }
 419
 420         addPart(parsingMessagesSection);
 421
 422         addPart(nonViralNameSection);
 423
 424     }
 425
 426     private void createNameSections(RootElement parent) {
 427         destroySections();
 428         NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(
 429                 getConversationHolder(), parent, this, false, ExpandableComposite.TWISTIE
 430                         | ExpandableComposite.EXPANDED);
 431         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 432
 433         NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
 434                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 435         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 436
 437         NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
 438                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 439         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 440
 441         addPart(nonViralNameSection);
 442         addPart(nomenclaturalStatusSection);
 443         addPart(referenceDetailSection);
 444 //TODO RL
 445         if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
 446                         ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 447                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 448
 449                 TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 450                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 451
 452                 NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 453                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 454                 addPart(protologSection);
 455                 addPart(typeDesignationSection);
 456                 addPart(nameRelationshipSection);
 457         }
 458     }
 459
 460     private void createReferenceSections(RootElement parent) {
 461         destroySections();
 462
 463         ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
 464                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 465
 466         addPart(referenceDetailSection);
 467     }
 468
 469     private void createTeamOrPersonBaseDetailSection(RootElement parent) {
 470         destroySections();
 471         TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 472
 473         addPart(teamOrPersonBaseDetailSection);
 474     }
 475
 476     private void createTeamDetailSection(RootElement parent) {
 477         destroySections();
 478         TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 479
 480         addPart(teamDetailSection);
 481     }
 482
 483     private void createPersonDetailSection(RootElement parent) {
 484         destroySections();
 485         PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 486         addPart(personDetailSection);
 487     }
 488
 489     private void createDescriptionElementSection(RootElement parent) {
 490         destroySections();
 491
 492         DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 493
 494         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 495
 496         DescriptionElementSourceSection descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 497
 498         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 499
 500         DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 501
 502         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 503
 504         addPart(descriptionElementDetailSection);
 505         addPart(descriptionElementSourceSection);
 506         addPart(descriptionElementMediaSection);
 507     }
 508
 509     private void createDescriptionSection(RootElement parent) {
 510         destroySections();
 511         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 512
 513         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 514
 515         NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 516
 517         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 518
 519 //        DescribedSpecimenSection describedSpecimenSection = formFactory.createDescribedSpecimenSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 520 //
 521 //        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 522
 523         //              DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
 524         //                              .createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
 525         //                                              getConversationHolder(), parent, Section.TWISTIE);
 526         //
 527         //              formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 528
 529         ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 530
 531         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 532
 533         addPart(descriptionDetailSection);
 534         addPart(naturalLanguageSection);
 535 //        addPart(describedSpecimenSection);
 536         //              addPart(descriptionSourceSection);
 537         addPart(scopeSection);
 538     }
 539
 540     private void createSpecimenDescriptionSection(RootElement parent) {
 541         destroySections();
 542         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 543         addPart(descriptionDetailSection);
 544     }
 545
 546     private void createUseDescriptionSection(RootElement parent) {
 547         destroySections();
 548         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 549
 550         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 551
 552         DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 553
 554         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 555
 556         addPart(descriptionDetailSection);
 557         addPart(descriptionSourceSection);
 558
 559     }
 560
 561     private void createImageGallerySection(RootElement parent) {
 562         destroySections();
 563         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 564
 565         addPart(descriptionDetailSection);
 566     }
 567
 568     private void createMediaElementSection(RootElement parent) {
 569         destroySections();
 570
 571         MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 572
 573         addPart(mediaDetailSection);
 574     }
 575
 576     private void createDerivedUnitBaseElementSection(RootElement parent) {
 577         destroySections();
 578
 579         DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 580         //TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
 581         if(!(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart)){
 582             derivedUnitGeneralDetailSection.setShowOnlyDerivedUnitData(true);
 583         }
 584         addPart(derivedUnitGeneralDetailSection);
 585
 586         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 587
 588         DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 589         addPart(derivedUnitBaseDetailSection);
 590
 591         //for editors working with facades
 592         if(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart){
 593             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 594             GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 595             addPart(gatheringEventDetailSection);
 596
 597             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 598             FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 599             addPart(fieldUnitDetailSection);
 600         }
 601         else{
 602
 603             if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_TAXON_ASSOCIATIONS)){
 604                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 605                 TaxonAssociationDetailSection taxonAssociationDetailSection = formFactory.createTaxonAssociationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 606                 addPart(taxonAssociationDetailSection);
 607             }
 608             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 609             DerivedUnitFacadeIdentifierSection identifierDetailSection = formFactory.createDerivedUnitFacadeIdentifierSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 610             addPart(identifierDetailSection);
 611         }
 612         if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
 613             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 614             DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 615             addPart(determinationDetailSection);
 616         }
 617
 618         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 619         DerivedUnitTypeDesignationSection derivedUnitTypeDesignationSection = formFactory.createDerivedUnitTypeDesignationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 620         addPart(derivedUnitTypeDesignationSection);
 621
 622     }
 623
 624     private void createFieldUnitSection(RootElement parent) {
 625         destroySections();
 626
 627         FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 628
 629         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 630
 631         GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 632
 633         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 634
 635         FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 636
 637         addPart(fielUnitGeneralDetailSection);
 638         addPart(gatheringEventDetailSection);
 639         addPart(fieldUnitDetailSection);
 640
 641         if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
 642             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 643             DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 644             addPart(determinationDetailSection);
 645         }
 646     }
 647
 648     private void createTissueSampleSection(RootElement parent) {
 649         destroySections();
 650
 651         TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 652
 653         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 654
 655         SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 656
 657         addPart(section);
 658         addPart(sampleDesignationDetailSection);
 659     }
 660
 661     private void createDnaSampleSection(RootElement parent) {
 662         destroySections();
 663
 664         DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 665
 666         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 667
 668         DnaSamplePreparationPreservationSection preparationPreservationSection = formFactory.createDnaSamplePreparationPreservationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 669
 670         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 671
 672         DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 673
 674         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 675
 676         SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 677
 678         addPart(section);
 679         addPart(preparationPreservationSection);
 680         addPart(qualitySection);
 681         addPart(sampleDesignationDetailSection);
 682     }
 683
 684     private void createSequenceSection(RootElement parent) {
 685         destroySections();
 686
 687         SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 688
 689         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 690
 691         SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 692
 693         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 694
 695         SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 696
 697
 698         addPart(section);
 699         addPart(referenceSection);
 700         addPart(contigFileSection);
 701     }
 702
 703     private void createSingleReadSection(RootElement parent) {
 704         destroySections();
 705
 706         SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 707         addPart(section);
 708
 709         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 710
 711         SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 712         addPart(pherogramSection);
 713
 714     }
 715
 716     private void createMediaSpecimenSection(RootElement parent) {
 717         destroySections();
 718
 719         MediaSpecimenGeneralDetailSection generalSection = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 720         addPart(generalSection);
 721
 722         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 723
 724         RightsSection rightsSection = formFactory.createRightsSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 725         addPart(rightsSection);
 726
 727     }
 728
 729     private void createFeatureDistributionSection(RootElement parent) {
 730         destroySections();
 731
 732         FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 733
 734         addPart(featureDistributionSection);
 735     }
 736
 737     private void createPolytomousKeyNodeSection(RootElement parent) {
 738         destroySections();
 739
 740         PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 741
 742         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 743
 744         PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 745
 746         addPart(polytomousKeyDetailSection);
 747         addPart(polytomousKeyNodeDetailSection);
 748
 749     }
 750
 751     private void createUseRecordSection(RootElement parent) {
 752         destroySections();
 753
 754         UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 755
 756         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 757
 758         addPart(descriptionUseRecordSection);
 759
 760
 761     }
 762
 763     private void createUserSection(RootElement parent) {
 764         destroySections();
 765
 766         UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 767
 768         GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 769
 770         addPart(userDetailSection);
 771         addPart(groupByUserDetailSection);
 772     }
 773
 774     private void createTaxonRelationshipSection(RootElement parent) {
 775         destroySections();
 776
 777         TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 778
 779         ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 780         addPart(taxonRelationshipDetailSection);
 781         addPart(referencedEntityBaseDetailSection);
 782     }
 783
 784     private void createTermVocabularySection(RootElement parent) {
 785         destroySections();
 786
 787         TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 788         addPart(termVocabularyDetailSection);
 789     }
 790
 791     private void createDefinedTermSection(RootElement parent) {
 792         destroySections();
 793
 794         AbstractFormSection<?> definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 795         addPart(definedTermDetailSection);
 796     }
 797
 798         @Override
 799         public void update(CdmDataChangeMap arg0) {
 800
 801         }
 802
 803 }