3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.EnumSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockMode
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
27 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
28 import eu
.etaxonomy
.cdm
.api
.service
.TaxaAndNamesSearchMode
;
29 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
30 import eu
.etaxonomy
.cdm
.api
.service
.config
.IFindTaxaAndNamesConfigurator
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.IncludedTaxonConfiguration
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.MatchingTaxonConfigurator
;
34 import eu
.etaxonomy
.cdm
.api
.service
.config
.SynonymDeletionConfigurator
;
35 import eu
.etaxonomy
.cdm
.api
.service
.config
.TaxonDeletionConfigurator
;
36 import eu
.etaxonomy
.cdm
.api
.service
.dto
.IncludedTaxaDTO
;
37 import eu
.etaxonomy
.cdm
.api
.service
.exception
.DataChangeNoRollbackException
;
38 import eu
.etaxonomy
.cdm
.api
.service
.exception
.HomotypicalGroupChangeException
;
39 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
40 import eu
.etaxonomy
.cdm
.api
.service
.search
.LuceneMultiSearchException
;
41 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
42 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
43 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
44 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
45 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
46 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableEntity
;
47 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
48 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
49 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
50 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
51 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
52 import eu
.etaxonomy
.cdm
.model
.common
.OrderedTermVocabulary
;
53 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
;
54 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
.Direction
;
55 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
56 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementBase
;
57 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
58 import eu
.etaxonomy
.cdm
.model
.description
.PresenceAbsenceTermBase
;
59 import eu
.etaxonomy
.cdm
.model
.location
.NamedArea
;
60 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
61 import eu
.etaxonomy
.cdm
.model
.media
.MediaRepresentation
;
62 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
63 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
64 import eu
.etaxonomy
.cdm
.model
.name
.Rank
;
65 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
66 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
67 import eu
.etaxonomy
.cdm
.model
.taxon
.Classification
;
68 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
69 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationship
;
70 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationshipType
;
71 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
72 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
73 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationship
;
74 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationshipType
;
75 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
76 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
77 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
78 import eu
.etaxonomy
.cdm
.persistence
.fetch
.CdmFetch
;
79 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
80 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
81 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
82 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
83 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
84 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
91 public class TransientTaxonService
implements ITaxonService
{
93 private final ITaxonService defaultTaxonService
;
96 * @param defaultTaxonService
98 public TransientTaxonService(ITaxonService defaultTaxonService
) {
99 this.defaultTaxonService
= defaultTaxonService
;
107 * @param propertyPaths
109 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
112 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(TaxonBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
113 return defaultTaxonService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
117 * @param annotatedObj
122 * @param propertyPaths
124 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
127 public Pager
<Annotation
> getAnnotations(TaxonBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
128 return defaultTaxonService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
133 * @see eu.etaxonomy.cdm.api.service.IService#clear()
136 public void clear() {
137 defaultTaxonService
.clear();
143 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
146 public void lock(TaxonBase t
, LockMode lockMode
) {
147 defaultTaxonService
.lock(t
, lockMode
);
153 * @param propertyPaths
154 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
157 public void refresh(TaxonBase t
, LockMode lockMode
, List
<String
> propertyPaths
) {
158 defaultTaxonService
.refresh(t
, lockMode
, propertyPaths
);
163 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
166 public void updateTitleCache() {
167 defaultTaxonService
.updateTitleCache();
173 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
176 public AuditEventRecord
<TaxonBase
> getNextAuditEvent(TaxonBase t
) {
177 return defaultTaxonService
.getNextAuditEvent(t
);
181 * @param annotatableEntity
186 * @param propertyPaths
188 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
191 public Pager
<Marker
> getMarkers(TaxonBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
192 return defaultTaxonService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
198 * @param cacheStrategy
200 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
203 public void updateTitleCache(Class
<?
extends TaxonBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<TaxonBase
> cacheStrategy
, IProgressMonitor monitor
) {
204 defaultTaxonService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
210 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
213 public AuditEventRecord
<TaxonBase
> getPreviousAuditEvent(TaxonBase t
) {
214 return defaultTaxonService
.getPreviousAuditEvent(t
);
220 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
223 public int count(Class
<?
extends TaxonBase
> clazz
) {
224 return defaultTaxonService
.count(clazz
);
235 * @param propertyPaths
237 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
240 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(Class
<?
extends TaxonBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
241 return defaultTaxonService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
247 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
250 public TaxonBase
find(LSID lsid
) {
251 return defaultTaxonService
.find(lsid
);
255 * @param persistentObject
257 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
260 public String
delete(TaxonBase persistentObject
) {
261 return defaultTaxonService
.delete(persistentObject
);
269 * @param propertyPaths
271 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
274 public List
<Object
[]> groupMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
275 return defaultTaxonService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
281 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
284 public boolean exists(UUID uuid
) {
285 return defaultTaxonService
.exists(uuid
);
293 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
296 public TaxonBase
replace(TaxonBase x
, TaxonBase y
) {
297 return defaultTaxonService
.replace(x
, y
);
303 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
306 public List
<TaxonBase
> find(Set
<UUID
> uuidSet
) {
307 return defaultTaxonService
.find(uuidSet
);
314 * @param propertyPaths
316 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
319 public Pager
<IdentifiableSource
> getSources(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
320 return defaultTaxonService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
326 * @param onlyWithChildren
329 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
333 public List
<Taxon
> getRootTaxa(Reference sec
, CdmFetch cdmFetch
, boolean onlyWithChildren
) {
334 return defaultTaxonService
.getRootTaxa(sec
, cdmFetch
, onlyWithChildren
);
340 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
343 public TaxonBase
find(UUID uuid
) {
344 return defaultTaxonService
.find(uuid
);
350 * @param onlyWithChildren
351 * @param withMisapplications
352 * @param propertyPaths
355 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
359 public List
<Taxon
> getRootTaxa(Rank rank
, Reference sec
, boolean onlyWithChildren
, boolean withMisapplications
, List
<String
> propertyPaths
) {
360 return defaultTaxonService
.getRootTaxa(rank
, sec
, onlyWithChildren
, withMisapplications
, propertyPaths
);
366 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
369 public TaxonBase
find(int id
) {
370 return defaultTaxonService
.find(id
);
377 * @param propertyPaths
379 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
382 public Pager
<Rights
> getRights(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
383 return defaultTaxonService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
390 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
393 public int countMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
) {
394 return defaultTaxonService
.countMarkers(clazz
, technical
);
400 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
403 public List
<TaxonBase
> findById(Set
<Integer
> idSet
) {
404 return defaultTaxonService
.findById(idSet
);
412 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
415 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
416 return defaultTaxonService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
421 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
424 public Session
getSession() {
425 return defaultTaxonService
.getSession();
430 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
433 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCache() {
434 return defaultTaxonService
.getUuidAndTitleCache();
442 * @param propertyPaths
444 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
447 public List
<Object
[]> group(Class
<?
extends TaxonBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
448 return defaultTaxonService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
455 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
458 public List
<RelationshipBase
> getAllRelationships(int limit
, int start
) {
459 return defaultTaxonService
.getAllRelationships(limit
, start
);
470 * @param propertyPaths
472 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
475 public Pager
<TaxonBase
> findByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
476 return defaultTaxonService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
482 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
486 public OrderedTermVocabulary
<TaxonRelationshipType
> getTaxonRelationshipTypeVocabulary() {
487 return defaultTaxonService
.getTaxonRelationshipTypeVocabulary();
494 * @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
497 public List
<TaxonBase
> searchTaxaByName(String name
, Reference sec
) {
498 return defaultTaxonService
.searchTaxaByName(name
, sec
);
503 * @param acceptedTaxon
504 * @see eu.etaxonomy.cdm.api.service.ITaxonService#swapSynonymAndAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
507 public void swapSynonymAndAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
) {
508 defaultTaxonService
.swapSynonymAndAcceptedTaxon(synonym
, acceptedTaxon
);
516 * @param propertyPaths
518 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
521 public <S
extends TaxonBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
522 return defaultTaxonService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
526 * @param configurator
528 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
531 public Pager
<TaxonBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
532 return defaultTaxonService
.findByTitle(configurator
);
537 * @param acceptedTaxon
538 * @param deleteSynonym
539 * @param copyCitationInfo
541 * @param microCitation
543 * @throws HomotypicalGroupChangeException
544 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
547 public Taxon
changeSynonymToAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
, boolean deleteSynonym
, boolean copyCitationInfo
, Reference citation
, String microCitation
) throws HomotypicalGroupChangeException
{
548 return defaultTaxonService
.changeSynonymToAcceptedTaxon(synonym
, acceptedTaxon
, deleteSynonym
, copyCitationInfo
, citation
, microCitation
);
557 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
560 public Integer
countByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
561 return defaultTaxonService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
567 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
570 public TaxonBase
load(UUID uuid
) {
571 return defaultTaxonService
.load(uuid
);
576 * @param propertyPaths
578 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
581 public TaxonBase
load(UUID uuid
, List
<String
> propertyPaths
) {
582 return defaultTaxonService
.load(uuid
, propertyPaths
);
586 * @param configurator
588 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
591 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
592 return defaultTaxonService
.countByTitle(configurator
);
596 * @param transientObject
598 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
601 public TaxonBase
merge(TaxonBase transientObject
) {
602 return defaultTaxonService
.merge(transientObject
);
613 * @param propertyPaths
615 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
618 public List
<TaxonBase
> listByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
619 return defaultTaxonService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
627 * @param propertyPaths
629 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
632 public <S
extends TaxonBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
633 return defaultTaxonService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
637 * @param persistentObject
639 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
642 public UUID
refresh(TaxonBase persistentObject
) {
643 return defaultTaxonService
.refresh(persistentObject
);
649 * @param taxonRelationshipType
651 * @param microReference
653 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
656 public Taxon
changeSynonymToRelatedTaxon(Synonym synonym
, Taxon toTaxon
, TaxonRelationshipType taxonRelationshipType
, Reference reference
, String microReference
) {
657 return defaultTaxonService
.changeSynonymToRelatedTaxon(synonym
, toTaxon
, taxonRelationshipType
, reference
, microReference
);
668 * @param propertyPaths
670 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
673 public List
<TaxonBase
> listByReferenceTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
674 return defaultTaxonService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
682 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
685 public List
<TaxonBase
> rows(String tableName
, int limit
, int start
) {
686 return defaultTaxonService
.rows(tableName
, limit
, start
);
690 * @param newInstances
692 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
695 public Map
<UUID
, TaxonBase
> save(Collection
<TaxonBase
> newInstances
) {
703 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
706 public long deleteSynonymRelationships(Synonym syn
, Taxon taxon
) {
707 return defaultTaxonService
.deleteSynonymRelationships(syn
, taxon
);
713 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
716 public UUID
save(TaxonBase newInstance
) {
721 * @param transientObject
723 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
726 public UUID
saveOrUpdate(TaxonBase transientObject
) {
732 * @param newHomotypicalGroup
734 * @param removeFromOtherTaxa
735 * @param setBasionymRelationIfApplicable
736 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
739 public void changeHomotypicalGroupOfSynonym(Synonym synonym
, HomotypicalGroup newHomotypicalGroup
, Taxon targetTaxon
, boolean removeFromOtherTaxa
, boolean setBasionymRelationIfApplicable
) {
740 defaultTaxonService
.changeHomotypicalGroupOfSynonym(synonym
, newHomotypicalGroup
, targetTaxon
, removeFromOtherTaxa
, setBasionymRelationIfApplicable
);
744 * @param transientObjects
746 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
749 public Map
<UUID
, TaxonBase
> saveOrUpdate(Collection
<TaxonBase
> transientObjects
) {
754 * @param transientObject
756 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
759 public UUID
update(TaxonBase transientObject
) {
760 return defaultTaxonService
.update(transientObject
);
765 * @param includeProperties
769 * @param propertyPaths
771 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
774 public List
<TaxonBase
> list(TaxonBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
775 return defaultTaxonService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
779 * @param oldSynonymRelation
781 * @param moveHomotypicGroup
782 * @param newSynonymRelationshipType
783 * @param newReference
784 * @param newReferenceDetail
785 * @param keepReference
787 * @throws HomotypicalGroupChangeException
788 * @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
791 public SynonymRelationship
moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation
, Taxon newTaxon
, boolean moveHomotypicGroup
, SynonymRelationshipType newSynonymRelationshipType
, Reference newReference
, String newReferenceDetail
, boolean keepReference
) throws HomotypicalGroupChangeException
{
792 return defaultTaxonService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxon
, moveHomotypicGroup
, newSynonymRelationshipType
, newReference
, newReferenceDetail
, keepReference
);
797 * @param matchStrategy
798 * @param mergeStrategy
800 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
803 public int deduplicate(Class
<?
extends TaxonBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
804 return defaultTaxonService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
815 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
818 public Pager
<TaxonBase
> findTitleCache(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
819 return defaultTaxonService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
828 * @param propertyPaths
830 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
833 public List
<TaxonRelationship
> listToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
834 return defaultTaxonService
.listToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
843 * @param propertyPaths
845 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
848 public Pager
<TaxonRelationship
> pageToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
849 return defaultTaxonService
.pageToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
858 * @param propertyPaths
860 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
863 public List
<TaxonRelationship
> listFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
864 return defaultTaxonService
.listFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
873 * @param propertyPaths
875 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
878 public Pager
<TaxonRelationship
> pageFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
879 return defaultTaxonService
.pageFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
884 * @param includeRelationships
888 * @param propertyPaths
890 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
893 public Set
<Taxon
> listRelatedTaxa(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Integer maxDepth
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
894 return defaultTaxonService
.listRelatedTaxa(taxon
, includeRelationships
, maxDepth
, limit
, start
, propertyPaths
);
901 * @param propertyPaths
903 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
906 public List
<Classification
> listClassifications(TaxonBase taxonBase
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
907 return defaultTaxonService
.listClassifications(taxonBase
, limit
, start
, propertyPaths
);
916 * @param propertyPaths
918 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
921 public Pager
<SynonymRelationship
> getSynonyms(Synonym synonym
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
922 return defaultTaxonService
.getSynonyms(synonym
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
931 * @param propertyPaths
933 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
936 public Pager
<SynonymRelationship
> getSynonyms(Taxon taxon
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
937 return defaultTaxonService
.getSynonyms(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
942 * @param propertyPaths
944 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
947 public List
<Synonym
> getHomotypicSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
948 return defaultTaxonService
.getHomotypicSynonymsByHomotypicGroup(taxon
, propertyPaths
);
953 * @param propertyPaths
955 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
958 public List
<List
<Synonym
>> getHeterotypicSynonymyGroups(Taxon taxon
, List
<String
> propertyPaths
) {
959 return defaultTaxonService
.getHeterotypicSynonymyGroups(taxon
, propertyPaths
);
968 * @param propertyPaths
970 * @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
973 public Pager
<TaxonBase
> search(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
974 return defaultTaxonService
.search(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
980 * @param infragenericEpithet
981 * @param specificEpithet
982 * @param infraspecificEpithet
987 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
990 public Pager
<TaxonBase
> findTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
991 return defaultTaxonService
.findTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
997 * @param infragenericEpithet
998 * @param specificEpithet
999 * @param infraspecificEpithet
1004 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1007 public List
<TaxonBase
> listTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
1008 return defaultTaxonService
.listTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1012 * @param configurator
1014 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1017 public Pager
<IdentifiableEntity
> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator
) {
1018 return defaultTaxonService
.findTaxaAndNames(configurator
);
1022 * @param queryString
1023 * @param classification
1025 * @param highlightFragments
1029 * @param propertyPaths
1031 * @throws CorruptIndexException
1032 * @throws IOException
1033 * @throws ParseException
1034 * @throws LuceneMultiSearchException
1036 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1040 public Pager
<SearchResult
<TaxonBase
>> findByEverythingFullText(String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1041 return defaultTaxonService
.findByEverythingFullText(queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1046 * @param queryString
1047 * @param classification
1049 * @param highlightFragments
1053 * @param propertyPaths
1055 * @throws CorruptIndexException
1056 * @throws IOException
1057 * @throws ParseException
1058 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1061 public Pager
<SearchResult
<TaxonBase
>> findByFullText(Class
<?
extends TaxonBase
> clazz
, String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1062 return defaultTaxonService
.findByFullText(clazz
, queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1067 * @param statusFilter
1068 * @param classification
1072 * @param propertyPaths
1074 * @throws IOException
1075 * @throws ParseException
1076 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1079 public Pager
<SearchResult
<TaxonBase
>> findByDistribution(List
<NamedArea
> areaFilter
, List
<PresenceAbsenceTermBase
<?
>> statusFilter
, Classification classification
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws IOException
, ParseException
{
1080 return defaultTaxonService
.findByDistribution(areaFilter
, statusFilter
, classification
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1084 * @param searchModes
1085 * @param queryString
1086 * @param classification
1088 * @param distributionStatus
1090 * @param highlightFragments
1094 * @param propertyPaths
1096 * @throws CorruptIndexException
1097 * @throws IOException
1098 * @throws ParseException
1099 * @throws LuceneMultiSearchException
1100 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1103 public Pager
<SearchResult
<TaxonBase
>> findTaxaAndNamesByFullText(EnumSet
<TaxaAndNamesSearchMode
> searchModes
, String queryString
, Classification classification
, Set
<NamedArea
> namedAreas
, Set
<PresenceAbsenceTermBase
<?
>> distributionStatus
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1104 return defaultTaxonService
.findTaxaAndNamesByFullText(searchModes
, queryString
, classification
, namedAreas
, distributionStatus
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1109 * @param queryString
1110 * @param classification
1113 * @param highlightFragments
1117 * @param propertyPaths
1119 * @throws CorruptIndexException
1120 * @throws IOException
1121 * @throws ParseException
1122 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1125 public Pager
<SearchResult
<TaxonBase
>> findByDescriptionElementFullText(Class
<?
extends DescriptionElementBase
> clazz
, String queryString
, Classification classification
, List
<Feature
> features
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1126 return defaultTaxonService
.findByDescriptionElementFullText(clazz
, queryString
, classification
, features
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1133 * @param widthOrDuration
1137 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
1141 public List
<MediaRepresentation
> getAllMedia(Taxon taxon
, int size
, int height
, int widthOrDuration
, String
[] mimeTypes
) {
1142 return defaultTaxonService
.getAllMedia(taxon
, size
, height
, widthOrDuration
, mimeTypes
);
1147 * @param includeRelationships
1148 * @param limitToGalleries
1149 * @param propertyPath
1152 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
1156 public List
<Media
> listTaxonDescriptionMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, boolean limitToGalleries
, List
<String
> propertyPath
) {
1157 return defaultTaxonService
.listTaxonDescriptionMedia(taxon
, includeRelationships
, limitToGalleries
, propertyPath
);
1162 * @param includeRelationships
1163 * @param limitToGalleries
1164 * @param includeTaxonDescriptions
1165 * @param includeOccurrences
1166 * @param includeTaxonNameDescriptions
1167 * @param propertyPath
1169 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
1172 public List
<Media
> listMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Boolean limitToGalleries
, Boolean includeTaxonDescriptions
, Boolean includeOccurrences
, Boolean includeTaxonNameDescriptions
, List
<String
> propertyPath
) {
1173 return defaultTaxonService
.listMedia(taxon
, includeRelationships
, limitToGalleries
, includeTaxonDescriptions
, includeOccurrences
, includeTaxonNameDescriptions
, propertyPath
);
1179 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
1182 public List
<TaxonBase
> findTaxaByID(Set
<Integer
> listOfIDs
) {
1183 return defaultTaxonService
.findTaxaByID(listOfIDs
);
1188 * @param propertyPaths
1190 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
1193 public TaxonBase
findTaxonByUuid(UUID uuid
, List
<String
> propertyPaths
) {
1194 return defaultTaxonService
.findTaxonByUuid(uuid
, propertyPaths
);
1199 * @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
1202 public int countAllRelationships() {
1203 return defaultTaxonService
.countAllRelationships();
1207 * @param propertyPath
1209 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
1212 public List
<TaxonNameBase
> findIdenticalTaxonNames(List
<String
> propertyPath
) {
1213 return defaultTaxonService
.findIdenticalTaxonNames(propertyPath
);
1217 * @param propertyPath
1219 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
1222 public List
<TaxonNameBase
> findIdenticalTaxonNameIds(List
<String
> propertyPath
) {
1223 return defaultTaxonService
.findIdenticalTaxonNameIds(propertyPath
);
1229 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
1232 public String
getPhylumName(TaxonNameBase name
) {
1233 return defaultTaxonService
.getPhylumName(name
);
1239 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
1242 public long deleteSynonymRelationships(Synonym syn
) {
1243 return defaultTaxonService
.deleteSynonymRelationships(syn
);
1252 * @param propertyPaths
1255 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
1258 public List
<SynonymRelationship
> listSynonymRelationships(TaxonBase taxonBase
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
, Direction direction
) {
1259 return defaultTaxonService
.listSynonymRelationships(taxonBase
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
, direction
);
1265 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
1268 public Taxon
findBestMatchingTaxon(String taxonName
) {
1269 return defaultTaxonService
.findBestMatchingTaxon(taxonName
);
1275 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1278 public Taxon
findBestMatchingTaxon(MatchingTaxonConfigurator config
) {
1279 return defaultTaxonService
.findBestMatchingTaxon(config
);
1285 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
1288 public Synonym
findBestMatchingSynonym(String taxonName
) {
1289 return defaultTaxonService
.findBestMatchingSynonym(taxonName
);
1294 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheTaxon()
1297 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheTaxon() {
1298 return defaultTaxonService
.getUuidAndTitleCacheTaxon();
1303 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheSynonym()
1306 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheSynonym() {
1307 return defaultTaxonService
.getUuidAndTitleCacheSynonym();
1311 * @param configurator
1313 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1316 public List
<UuidAndTitleCache
<TaxonBase
>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator
) {
1317 return defaultTaxonService
.findTaxaAndNamesForEditor(configurator
);
1324 * @param doWithMisappliedNames
1326 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
1329 public List
<Synonym
> createInferredSynonyms(Taxon taxon
, Classification tree
, SynonymRelationshipType type
, boolean doWithMisappliedNames
) {
1330 return defaultTaxonService
.createInferredSynonyms(taxon
, tree
, type
, doWithMisappliedNames
);
1336 * @param doWithMisappliedNames
1338 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
1341 public List
<Synonym
> createAllInferredSynonyms(Taxon taxon
, Classification tree
, boolean doWithMisappliedNames
) {
1342 return defaultTaxonService
.createAllInferredSynonyms(taxon
, tree
, doWithMisappliedNames
);
1346 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1349 public String
deleteSynonym(Synonym arg0
, SynonymDeletionConfigurator arg1
) {
1350 return defaultTaxonService
.deleteSynonym(arg0
, arg1
);
1354 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1357 public String
deleteSynonym(Synonym arg0
, Taxon arg1
, SynonymDeletionConfigurator arg2
) {
1358 return defaultTaxonService
.deleteSynonym(arg0
, arg1
, arg2
);
1362 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, eu.etaxonomy.cdm.model.taxon.Classification)
1365 public String
deleteTaxon(Taxon arg0
, TaxonDeletionConfigurator arg1
, Classification arg2
) {
1366 return defaultTaxonService
.deleteTaxon(arg0
, arg1
, arg2
);
1370 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
1373 public List
<List
<Synonym
>> getSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
1374 return defaultTaxonService
.getSynonymsByHomotypicGroup(taxon
, propertyPaths
);
1378 public Synonym
changeRelatedTaxonToSynonym(Taxon fromTaxon
, Taxon toTaxon
,
1379 TaxonRelationshipType oldRelationshipType
,
1380 SynonymRelationshipType synonymRelationshipType
)
1381 throws DataChangeNoRollbackException
{
1383 return defaultTaxonService
.changeRelatedTaxonToSynonym(fromTaxon
, toTaxon
, oldRelationshipType
, synonymRelationshipType
);
1387 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1390 public Pager
<Taxon
> pageAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1391 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1392 return defaultTaxonService
.pageAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1396 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listAcceptedTaxaFor(java.util.UUID, java.util.UUID, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1399 public List
<Taxon
> listAcceptedTaxaFor(UUID synonymUuid
, UUID classificationUuid
, Integer pageSize
,
1400 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
1401 return defaultTaxonService
.listAcceptedTaxaFor(synonymUuid
, classificationUuid
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1405 public List
<String
> isDeletable(TaxonBase object
,
1406 DeleteConfiguratorBase config
) {
1407 // TODO Auto-generated method stub
1412 public IncludedTaxaDTO
listIncludedTaxa(UUID taxonUuid
,
1413 IncludedTaxonConfiguration configuration
) {
1414 // TODO Auto-generated method stub