eu.etaxonomy.taxeditor.molecular.lib/pom.xml

   1 <project>
   2   <modelVersion>4.0.0</modelVersion>
   3   <groupId>eu.etaxonomy.taxeditor</groupId>
   4   <artifactId>eu.etaxonomy.taxeditor.molecular.lib</artifactId>
   5   <packaging>eclipse-plugin</packaging>
   6
   7   <parent>
   8     <groupId>eu.etaxonomy</groupId>
   9     <artifactId>taxeditor-parent</artifactId>
  10     <version>5.4.0-SNAPSHOT</version>
  11   </parent>
  12
  13   <name>Molecular Library Dependencies Bundle</name>
  14   <description>Plugin containing all the library dependencies</description>
  15
  16   <build>
  17     <plugins>
  18       <plugin>
  19         <groupId>org.apache.maven.plugins</groupId>
  20         <artifactId>maven-dependency-plugin</artifactId>
  21         <version>2.4</version>
  22         <executions>
  23           <execution>
  24             <id>copy-dependencies</id>
  25             <phase>validate</phase>
  26             <goals>
  27               <goal>copy-dependencies</goal>
  28             </goals>
  29             <configuration>
  30               <includeArtifactIds>libralign-core, libralign-swt, libralign-biojava1, libralign-io,
  31                 bioinfweb-commons-java-swt, bioinfweb-commons-java-core,
  32                 bioinfweb-commons-java-bio, bioinfweb-commons-java-swing,
  33                 tic-core, core, sequencing,
  34                 tic-swt, jphyloio-core, owlapi-xmlutils,
  35                 commons-lang3, commons-collections4, commons-beanutils</includeArtifactIds>
  36               <outputDirectory>lib</outputDirectory>
  37               <overWriteReleases>true</overWriteReleases>
  38               <overWriteSnapshots>true</overWriteSnapshots>
  39               <excludeTransitive>true</excludeTransitive>
  40             </configuration>
  41           </execution>
  42           <!-- <execution> -->
  43           <!-- <id>copy-dependencies-sources</id> -->
  44           <!-- <phase>validate</phase> -->
  45           <!-- <goals> -->
  46           <!-- <goal>copy-dependencies</goal> -->
  47           <!-- </goals> -->
  48           <!-- <configuration> -->
  49           <!-- <classifier>sources</classifier> -->
  50           <!-- <includeArtifactIds>cdmlib-commons,cdmlib-model,cdmlib-persistence,cdmlib-remote,cdmlib-print,cdmlib-services,cdmlib-ext,cdmlib-io</includeArtifactIds> -->
  51           <!-- <outputDirectory>lib</outputDirectory> -->
  52           <!-- <overWriteReleases>true</overWriteReleases> -->
  53           <!-- <overWriteSnapshots>true</overWriteSnapshots> -->
  54           <!-- <excludeTransitive>true</excludeTransitive> -->
  55           <!-- <failOnMissingClassifierArtifact>false</failOnMissingClassifierArtifact> -->
  56           <!-- </configuration> -->
  57           <!-- </execution> -->
  58         </executions>
  59       </plugin>
  60       <plugin>
  61         <groupId>org.apache.maven.plugins</groupId>
  62         <artifactId>maven-antrun-plugin</artifactId>
  63         <version>1.7</version>
  64         <executions>
  65           <execution>
  66             <id>remove-existing-jars</id>
  67             <phase>clean</phase>
  68             <goals>
  69               <goal>run</goal>
  70             </goals>
  71             <configuration>
  72               <target>
  73                 <echo>Remove all jars</echo>
  74                 <delete>
  75                   <fileset dir="./lib" includes="*" />
  76                 </delete>
  77               </target>
  78             </configuration>
  79           </execution>
  80
  81           <!-- The following should not be necessary anymore. -->
  82           <execution>
  83             <id>update-snapshot-jar-names</id>
  84             <phase>validate</phase>
  85             <goals>
  86               <goal>run</goal>
  87             </goals>
  88             <configuration>
  89               <target>
  90                 <echo>Update jars to SNAPSHOT when build with
  91                   timestamp</echo>
  92                 <move todir="./lib">
  93                   <fileset dir="./lib" />
  94                   <mapper type="regexp" from="(^bioinfweb\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
  95                 </move>
  96                 <move todir="./lib">
  97                   <fileset dir="./lib" />
  98                   <mapper type="regexp" from="(^libralign\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
  99                 </move>
 100                 <move todir="./lib">
 101                   <fileset dir="./lib" />
 102                   <mapper type="regexp" from="(^tic\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
 103                 </move>
 104                 <move todir="./lib">
 105                   <fileset dir="./lib" />
 106                   <mapper type="regexp" from="(^jphyloio\-.*\-[0-9]-)[0-9.-]+(\.jar)" to="\1SNAPSHOT\2" />
 107                 </move>
 108               </target>
 109             </configuration>
 110           </execution>
 111         </executions>
 112       </plugin>
 113     </plugins>
 114   </build>
 115
 116   <dependencies>
 117     <!-- Apache commons -->
 118     <dependency>
 119         <groupId>org.apache.commons</groupId>
 120         <artifactId>commons-lang3</artifactId>
 121         <version>3.5</version>
 122     </dependency>
 123     <dependency>
 124       <groupId>org.apache.commons</groupId>
 125       <artifactId>commons-collections4</artifactId>
 126       <version>4.1</version>
 127     </dependency>
 128     <dependency>
 129       <groupId>commons-beanutils</groupId>
 130       <artifactId>commons-beanutils</artifactId>
 131       <version>1.9.2</version>
 132     </dependency>
 133
 134     <!-- bioinfweb.commons -->
 135     <dependency>
 136       <groupId>info.bioinfweb.commons.java</groupId>
 137       <artifactId>bioinfweb-commons-java-core</artifactId>
 138       <version>2.2.0</version>
 139     </dependency>
 140     <dependency>
 141       <groupId>info.bioinfweb.commons.java</groupId>
 142       <artifactId>bioinfweb-commons-java-swt</artifactId>
 143       <version>2.0.0</version>
 144     </dependency>
 145     <dependency>
 146       <groupId>info.bioinfweb.commons.java</groupId>
 147       <artifactId>bioinfweb-commons-java-bio</artifactId>
 148       <version>2.0.0</version>
 149     </dependency>
 150     <dependency>
 151       <groupId>info.bioinfweb.commons.java</groupId>
 152       <artifactId>bioinfweb-commons-java-swing</artifactId>
 153       <version>2.2.0</version>
 154     </dependency>
 155
 156     <!-- TIC -->
 157     <dependency>
 158       <groupId>info.bioinfweb.tic</groupId>
 159       <artifactId>tic-core</artifactId>
 160       <version>2.0.0</version>
 161     </dependency>
 162     <dependency>
 163       <groupId>info.bioinfweb.tic</groupId>
 164       <artifactId>tic-swt</artifactId>
 165       <version>2.0.0</version>
 166     </dependency>
 167
 168     <!-- BioJava -->
 169     <dependency>
 170       <groupId>org.biojava</groupId>
 171       <artifactId>core</artifactId>
 172       <version>1.9.2</version>
 173     </dependency>
 174     <dependency>
 175       <groupId>org.biojava</groupId>
 176       <artifactId>sequencing</artifactId>
 177       <version>1.9.2</version>
 178     </dependency>
 179
 180     <!-- LibrAlign -->
 181     <dependency>
 182       <groupId>info.bioinfweb.libralign</groupId>
 183       <artifactId>libralign-core</artifactId>
 184       <version>0.4.0</version>
 185     </dependency>
 186     <dependency>
 187       <groupId>info.bioinfweb.libralign</groupId>
 188       <artifactId>libralign-swt</artifactId>
 189       <version>0.4.0</version>
 190     </dependency>
 191     <dependency>
 192       <groupId>info.bioinfweb.libralign</groupId>
 193       <artifactId>libralign-biojava1</artifactId>
 194       <version>0.4.0</version>
 195     </dependency>
 196     <dependency>
 197       <groupId>info.bioinfweb.libralign</groupId>
 198       <artifactId>libralign-io</artifactId>
 199       <version>0.4.0</version>
 200     </dependency>
 201
 202     <!-- JPhyloIO -->
 203     <dependency>
 204       <groupId>info.bioinfweb.jphyloio</groupId>
 205       <artifactId>jphyloio-core</artifactId>
 206       <version>0.3.0</version>
 207     </dependency>
 208     <dependency>
 209       <groupId>info.bioinfweb.thirdparty.owlapi</groupId>
 210       <artifactId>owlapi-xmlutils</artifactId>
 211       <version>4.1.4</version>
 212     </dependency>
 213   </dependencies>
 214
 215   <repositories>
 216     <repository>
 217       <id>bioinfweb-maven-repo</id>
 218       <name>bioinfweb repository</name>
 219       <url>http://bioinfweb.info/MavenRepository/</url>
 220     </repository>
 221     <!-- <repository>
 222       <id>central-maven-repo</id>
 223       <name>Maven Central</name>
 224       <url>http://central.maven.org/maven2/</url>
 225     </repository> -->
 226   </repositories>
 227 </project>
 228