eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/detail/DetailsViewer.java

   1
   2 // $Id$
   3 /**
   4  * Copyright (C) 2011 EDIT
   5  * European Distributed Institute of Taxonomy
   6  * http://www.e-taxonomy.eu
   7  *
   8  * The contents of this file are subject to the Mozilla Public License Version 1.1
   9  * See LICENSE.TXT at the top of this package for the full license terms.
  10  */
  11
  12 package eu.etaxonomy.taxeditor.view.detail;
  13
  14 import java.util.Set;
  15
  16 import org.eclipse.jface.viewers.ISelection;
  17 import org.eclipse.jface.viewers.SelectionChangedEvent;
  18 import org.eclipse.jface.viewers.TreeNode;
  19 import org.eclipse.swt.SWT;
  20 import org.eclipse.swt.widgets.Composite;
  21 import org.eclipse.ui.forms.widgets.ExpandableComposite;
  22
  23 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
  24 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
  25 import eu.etaxonomy.cdm.api.service.ITermService;
  26 import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
  27 import eu.etaxonomy.cdm.model.agent.Person;
  28 import eu.etaxonomy.cdm.model.agent.Team;
  29 import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
  30 import eu.etaxonomy.cdm.model.common.DefinedTermBase;
  31 import eu.etaxonomy.cdm.model.common.Group;
  32 import eu.etaxonomy.cdm.model.common.Marker;
  33 import eu.etaxonomy.cdm.model.common.MarkerType;
  34 import eu.etaxonomy.cdm.model.common.TermVocabulary;
  35 import eu.etaxonomy.cdm.model.common.User;
  36 import eu.etaxonomy.cdm.model.description.CategoricalData;
  37 import eu.etaxonomy.cdm.model.description.DescriptionBase;
  38 import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
  39 import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
  40 import eu.etaxonomy.cdm.model.description.SpecimenDescription;
  41 import eu.etaxonomy.cdm.model.media.Media;
  42 import eu.etaxonomy.cdm.model.molecular.Amplification;
  43 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  44 import eu.etaxonomy.cdm.model.molecular.Sequence;
  45 import eu.etaxonomy.cdm.model.molecular.SingleRead;
  46 import eu.etaxonomy.cdm.model.name.NonViralName;
  47 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
  48 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
  49 import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
  50 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
  51 import eu.etaxonomy.cdm.model.reference.Reference;
  52 import eu.etaxonomy.cdm.model.taxon.TaxonBase;
  53 import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
  54 import eu.etaxonomy.taxeditor.editor.UsageTermCollection;
  55 import eu.etaxonomy.taxeditor.model.AbstractUtility;
  56 import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
  57 import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
  58 import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
  59 import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
  60 import eu.etaxonomy.taxeditor.store.CdmStore;
  61 import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
  62 import eu.etaxonomy.taxeditor.ui.element.RootElement;
  63 import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
  64 import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
  65 import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
  66 import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
  67 import eu.etaxonomy.taxeditor.ui.section.description.DescribedSpecimenSection;
  68 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
  69 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
  70 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
  71 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
  72 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
  73 import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
  74 import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
  75 import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
  76 import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
  77 import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
  78 import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
  79 import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
  80 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
  81 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
  82 import eu.etaxonomy.taxeditor.ui.section.key.TaxonomicScopeSection;
  83 import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
  84 import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
  85 import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
  86 import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
  87 import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
  88 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
  89 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
  90 import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
  91 import eu.etaxonomy.taxeditor.ui.section.occurrence.EmptySection;
  92 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
  93 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
  94 import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
  95 import eu.etaxonomy.taxeditor.ui.section.occurrence.OriginalLabelDataSection;
  96 import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenDetailSection;
  97 import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenDeterminationDetailSection;
  98 import eu.etaxonomy.taxeditor.ui.section.occurrence.derivedUnit.PreservedSpecimenGeneralDetailSection;
  99 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationCloningDetailSection;
 100 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationGelPhotoCollectionDetailSection;
 101 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationGeneralDetailSection;
 102 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationPrimerDetailSection;
 103 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
 104 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
 105 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
 106 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
 107 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
 108 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
 109 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
 110 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
 111 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.LivingPlantPhotoGeneralDetailSection;
 112 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
 113 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.SpecimenScanGeneralDetailSection;
 114 import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
 115 import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
 116 import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
 117 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
 118 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
 119 import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
 120 import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
 121 import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
 122 import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
 123 import eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer;
 124 import eu.etaxonomy.taxeditor.view.AbstractCdmViewPart;
 125
 126 /**
 127  *
 128  * The DetailsViewer handles the content of the details view (
 129  * {@link DetailsViewPart}).<br>
 130  * Depending on the type of the selected element the section of the details view
 131  * are created.
 132  *
 133  * @author n.hoffmann
 134  * @created Feb 12, 2010
 135  * @version 1.0
 136  */
 137 public class DetailsViewer extends AbstractCdmDataViewer {
 138
 139     private ISelection selection;
 140
 141     /**
 142      * <p>
 143      * Constructor for DetailsViewer.
 144      * </p>
 145      *
 146      * @param parent
 147      *            a {@link org.eclipse.swt.widgets.Composite} object.
 148      * @param viewPart
 149      *            a {@link eu.etaxonomy.taxeditor.view.AbstractCdmViewPart}
 150      *            object.
 151      */
 152     public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
 153         super(parent, viewPart);
 154     }
 155
 156     // START HACK TO MAKE THE DERIVED UNIT FACADE WORK
 157     // since we are getting implementations of DerivedUnitBase from the bulk
 158     // editor
 159     // and not derived unit facade objects,
 160
 161     /*
 162      * (non-Javadoc)
 163      *
 164      * @see
 165      * eu.etaxonomy.taxeditor.editor.view.AbstractCdmDataViewer#setInput(java
 166      * .lang.Object)
 167      */
 168     @Override
 169     public void setInput(Object input) {
 170         if(input instanceof TreeNode){
 171             input = ((TreeNode) input).getValue();
 172         }
 173         if(input instanceof GbifResponse){
 174             input = ((GbifResponse) input).getDerivedUnitFacade();
 175         }
 176         if (input.getClass().equals(DerivedUnit.class)) {
 177             DerivedUnit derivedUnit = (DerivedUnit)input;
 178             try {
 179                 input = DerivedUnitFacade.NewInstance(derivedUnit,
 180                         PreferencesUtil.getDerivedUnitConfigurator());
 181             } catch (DerivedUnitFacadeNotSupportedException e) {
 182                 AbstractUtility.error(getClass(), e);
 183             }
 184         }
 185         else if(input instanceof FieldUnit){
 186             input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
 187         }
 188         super.setInput(input);
 189     }
 190
 191     @Override
 192     protected void markViewPartDirty() {
 193         if (getInput() instanceof DerivedUnitFacade) {
 194             DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
 195             if(facade.innerDerivedUnit()!=null){
 196                 getViewPart().changed(facade.innerDerivedUnit());
 197             }
 198             else if(facade.innerFieldUnit()!=null){
 199                 getViewPart().changed(facade.innerFieldUnit());
 200             }
 201         }
 202         else{
 203             super.markViewPartDirty();
 204         }
 205     }
 206
 207     // END HACK TO MAKE THE DERIVED UNIT FACADE WORK
 208
 209     /*
 210      * (non-Javadoc)
 211      *
 212      * @see org.eclipse.jface.viewers.Viewer#refresh()
 213      */
 214     /** {@inheritDoc} */
 215     @Override
 216     protected void showParts() {
 217         // FIXME (CM) : Need to clean out this code.
 218         // Too much type checking to decide which detail view to display.
 219         // Need to build in a mechanism where navigators / editors are 'aware'
 220         // of the corresponding detail viewer.
 221         Object input = getInput();
 222
 223         destroySections();
 224         if (input instanceof TaxonBase) {
 225             createTaxonSections(rootElement);
 226
 227         } else if (input instanceof NonViralName) {
 228             createNameSections(rootElement);
 229
 230         } else if (input instanceof Reference) {
 231             createReferenceSections(rootElement);
 232
 233         } else if (input instanceof Team) {
 234             createTeamDetailSection(rootElement);
 235
 236         } else if (input instanceof Person) {
 237             createPersonDetailSection(rootElement);
 238
 239         } else if (input instanceof TeamOrPersonBase) {
 240             createTeamOrPersonBaseDetailSection(rootElement);
 241
 242         } else if (input instanceof DescriptionBase) {
 243             if(input instanceof SpecimenDescription){
 244                 //TODO: add more sections to DetailsView for SpecimenDescription
 245                 createSpecimenDescriptionSection(rootElement);
 246             }
 247             else{
 248                 Set<Marker> descriptionMarkers = ((DescriptionBase) input).getMarkers();
 249                 MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
 250                         UsageTermCollection.uuidUseMarkerType);
 251                 Boolean isUseDescription = false;
 252                 for (Marker marker : descriptionMarkers) {
 253                     if (marker.getMarkerType().equals(useMarkertype)) {
 254                         isUseDescription = true;
 255                     }
 256                 }
 257                 if (((DescriptionBase) input).isImageGallery()) {
 258                     createImageGallerySection(rootElement);
 259
 260                 } else if (isUseDescription) {
 261                     createUseDescriptionSection(rootElement);
 262                 } else {
 263                     createDescriptionSection(rootElement);
 264
 265                 }
 266             }
 267         } else if (input instanceof DescriptionElementBase) {
 268             Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
 269             MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
 270                     UsageTermCollection.uuidUseMarkerType);
 271             Boolean isUseDescription = false;
 272             for (Marker marker : descriptionMarkers) {
 273                 if (marker.getMarkerType().equals(useMarkertype)) {
 274                     isUseDescription = true;
 275                 }
 276             }
 277
 278             if (isUseDescription == true && input instanceof CategoricalData) {
 279                 createUseRecordSection(rootElement);
 280             } else {
 281                 createDescriptionElementSection(rootElement);
 282             }
 283
 284         } else if (input instanceof Media) {
 285             createMediaElementSection(rootElement);
 286
 287         } else if (input instanceof DerivedUnitFacade) {
 288             if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
 289                 createFieldUnitSection(rootElement);
 290             }
 291             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
 292                 createDerivedUnitBaseElementSection(rootElement);
 293             }
 294             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
 295                 createTissueSampleSection(rootElement);
 296             }
 297             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
 298                 createSpecimenScanSection(rootElement);
 299             }
 300             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
 301                 createLivingPlantPhotoSection(rootElement);
 302             }
 303             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.StillImage){
 304                 createMediaSpecimenSection(rootElement);
 305             }
 306             else{
 307                 createDerivedUnitBaseElementSection(rootElement);
 308             }
 309         } else if (input instanceof DnaSample){
 310             createDnaSampleSection(rootElement);
 311         } else if (input instanceof MediaSpecimen){
 312             createMediaSpecimenSection(rootElement);
 313         }
 314         else if(input instanceof Amplification){
 315             createAmplificationSection(rootElement);
 316         }
 317         else if(input instanceof Sequence){
 318             createSequenceSection(rootElement);
 319         }
 320         else if(input instanceof SingleRead){
 321             createSingleReadSection(rootElement);
 322         }
 323         else if (input instanceof FeatureNodeContainer) {
 324             createFeatureDistributionSection(rootElement);
 325
 326         }else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
 327             createPolytomousKeyNodeSection(rootElement);
 328         } else if (input instanceof User) {
 329             createUserSection(rootElement);
 330         } else if (input instanceof Group) {
 331             createGroupSection(rootElement);
 332         } else if (input instanceof TaxonRelationship) {
 333             createTaxonRelationshipSection(rootElement);
 334         } else if (input instanceof TermVocabulary) {
 335             createTermVocabularySection(rootElement);
 336         } else if (input instanceof DefinedTermBase) {
 337             createDefinedTermSection(rootElement);
 338         }
 339         else {
 340             createEmptySection(rootElement);
 341         }
 342         layout();
 343     }
 344
 345
 346     /**
 347      * @param rootElement
 348      */
 349     private void createEmptySection(RootElement parent) {
 350         destroySections();
 351
 352         EmptySection emptySection = formFactory.createEmptySection(formFactory, parent, SWT.NONE);
 353
 354         addPart(emptySection);
 355     }
 356
 357     /**
 358      * @param rootElement
 359      */
 360     private void createGroupSection(RootElement parent) {
 361         destroySections();
 362
 363         GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE| ExpandableComposite.EXPANDED);
 364         MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 365         GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 366
 367         addPart(groupDetailSection);
 368         addPart(memberDetailSection);
 369         addPart(grantedAuthorityDetailSection);
 370     }
 371
 372     /*
 373      * (non-Javadoc)
 374      *
 375      * @see org.eclipse.jface.viewers.Viewer#getSelection()
 376      */
 377     /** {@inheritDoc} */
 378     @Override
 379     public ISelection getSelection() {
 380         return selection;
 381     }
 382
 383     /*
 384      * (non-Javadoc)
 385      *
 386      * @see
 387      * org.eclipse.jface.viewers.Viewer#setSelection(org.eclipse.jface.viewers
 388      * .ISelection, boolean)
 389      */
 390     /** {@inheritDoc} */
 391     @Override
 392     public void setSelection(ISelection selection, boolean reveal) {
 393         this.selection = selection;
 394         SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
 395         fireSelectionChanged(selectionChangedEvent);
 396     }
 397
 398     /**
 399      * createTaxonSections(RootElement parent)
 400      *
 401      * @param parent
 402      */
 403     private void createTaxonSections(RootElement parent) {
 404         destroySections();
 405
 406         TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 407
 408         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 409
 410         NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE
 411                 | ExpandableComposite.EXPANDED);
 412
 413         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 414
 415         NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 416
 417         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 418
 419         NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE);
 420
 421         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 422
 423         ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 424
 425         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 426
 427         TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 428
 429         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 430
 431         NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 432
 433         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 434
 435         ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this, ExpandableComposite.EXPANDED);
 436
 437         addPart(taxonBaseDetailSection);
 438         addPart(nonViralNameSection);
 439         addPart(nomenclaturalStatusSection);
 440         addPart(protologSection);
 441         addPart(referenceDetailSection);
 442         addPart(typeDesignationSection);
 443         addPart(nameRelationshipSection);
 444         addPart(parsingMessagesSection);
 445     }
 446
 447     /**
 448      * createNameSections
 449      *
 450      * @param parent
 451      */
 452     private void createNameSections(RootElement parent) {
 453         destroySections();
 454         NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 455
 456         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 457
 458         NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 459
 460         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 461
 462         NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 463
 464         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 465
 466         ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 467
 468         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 469
 470         TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 471
 472         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 473
 474         NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 475
 476         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 477
 478         addPart(nonViralNameSection);
 479         addPart(nomenclaturalStatusSection);
 480         addPart(protologSection);
 481         addPart(referenceDetailSection);
 482         addPart(typeDesignationSection);
 483         addPart(nameRelationshipSection);
 484     }
 485
 486     /**
 487      * createReferenceSections
 488      *
 489      * @param parent
 490      */
 491     private void createReferenceSections(RootElement parent) {
 492         destroySections();
 493
 494         ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 495
 496         addPart(referenceDetailSection);
 497     }
 498
 499     /**
 500      * createTeamOrPersonBaseDetailSection
 501      *
 502      * @param parent
 503      */
 504     private void createTeamOrPersonBaseDetailSection(RootElement parent) {
 505         destroySections();
 506         TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 507
 508         addPart(teamOrPersonBaseDetailSection);
 509     }
 510
 511     /**
 512      * createTeamDetailSection
 513      *
 514      * @param parent
 515      */
 516     private void createTeamDetailSection(RootElement parent) {
 517         destroySections();
 518         TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 519
 520         addPart(teamDetailSection);
 521     }
 522
 523     /**
 524      * createPersonDetailSection
 525      *
 526      * @param parent
 527      */
 528     private void createPersonDetailSection(RootElement parent) {
 529         destroySections();
 530         PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 531         addPart(personDetailSection);
 532     }
 533
 534     /**
 535      * createDescriptionElementSection
 536      *
 537      * @param parent
 538      */
 539     private void createDescriptionElementSection(RootElement parent) {
 540         destroySections();
 541
 542         DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 543
 544         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 545
 546         DescriptionElementSourceSection descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 547
 548         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 549
 550         DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 551
 552         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 553
 554         addPart(descriptionElementDetailSection);
 555         addPart(descriptionElementSourceSection);
 556         addPart(descriptionElementMediaSection);
 557     }
 558
 559     /**
 560      * createDescriptionSection
 561      *
 562      * @param parent
 563      */
 564     private void createDescriptionSection(RootElement parent) {
 565         destroySections();
 566         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 567
 568         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 569
 570         NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 571
 572         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 573
 574         DescribedSpecimenSection describedSpecimenSection = formFactory.createDescribedSpecimenSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 575
 576         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 577
 578         //              DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
 579         //                              .createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
 580         //                                              getConversationHolder(), parent, Section.TWISTIE);
 581         //
 582         //              formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 583
 584         ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 585
 586         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 587
 588         addPart(descriptionDetailSection);
 589         addPart(naturalLanguageSection);
 590         addPart(describedSpecimenSection);
 591         //              addPart(descriptionSourceSection);
 592         addPart(scopeSection);
 593     }
 594
 595     /**
 596      * createDescriptionSection
 597      *
 598      * @param parent
 599      */
 600     private void createSpecimenDescriptionSection(RootElement parent) {
 601         destroySections();
 602         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 603         addPart(descriptionDetailSection);
 604     }
 605
 606     /**
 607      * Creates the use Description section
 608      *
 609      * @param parent
 610      */
 611     private void createUseDescriptionSection(RootElement parent) {
 612         destroySections();
 613         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 614
 615         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 616
 617         DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 618
 619         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 620
 621         addPart(descriptionDetailSection);
 622         addPart(descriptionSourceSection);
 623
 624     }
 625
 626
 627     /**
 628      * @param rootElement
 629      */
 630     private void createImageGallerySection(RootElement parent) {
 631         destroySections();
 632         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 633
 634         addPart(descriptionDetailSection);
 635     }
 636
 637     /**
 638      * createMediaElementSection
 639      *
 640      * @param parent
 641      */
 642
 643     private void createMediaElementSection(RootElement parent) {
 644         destroySections();
 645
 646         MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 647
 648         addPart(mediaDetailSection);
 649     }
 650
 651     /**
 652      * createDerivedUnitBaseElementSection
 653      *
 654      * @param parent
 655      */
 656     private void createDerivedUnitBaseElementSection(RootElement parent) {
 657         destroySections();
 658
 659         //different order of sections (Specimen Details as second section and expanded)
 660         if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
 661             DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 662             addPart(derivedUnitGeneralDetailSection);
 663
 664             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 665
 666             DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 667             addPart(derivedUnitBaseDetailSection);
 668
 669             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 670
 671             OriginalLabelDataSection originalLabelDataSection = formFactory.createOriginalLabelDataSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 672             addPart(originalLabelDataSection);
 673
 674             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 675
 676             GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 677             addPart(gatheringEventDetailSection);
 678
 679             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 680
 681             FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 682             addPart(fieldUnitDetailSection);
 683         }
 684         else{
 685             DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 686             addPart(derivedUnitGeneralDetailSection);
 687
 688             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 689
 690             GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 691             addPart(gatheringEventDetailSection);
 692
 693             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 694
 695             FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 696             addPart(fieldUnitDetailSection);
 697
 698             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 699
 700             DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 701             addPart(derivedUnitBaseDetailSection);
 702
 703             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 704
 705             DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 706             addPart(determinationDetailSection);
 707         }
 708
 709     }
 710
 711     private void createFieldUnitSection(RootElement parent) {
 712         destroySections();
 713
 714         FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 715
 716         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 717
 718         GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 719
 720         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 721
 722         FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 723
 724         addPart(fielUnitGeneralDetailSection);
 725         addPart(gatheringEventDetailSection);
 726         addPart(fieldUnitDetailSection);
 727
 728         if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
 729             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 730             DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 731             addPart(determinationDetailSection);
 732         }
 733     }
 734
 735     private void createPreservedSpecimenSpecimenSection(RootElement parent) {
 736         destroySections();
 737
 738         PreservedSpecimenGeneralDetailSection section = formFactory.createPreservedSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 739
 740         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 741
 742         PreservedSpecimenDetailSection derivedUnitBaseDetailSection = formFactory.createPreservedSpecimenDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 743
 744         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 745
 746         PreservedSpecimenDeterminationDetailSection determinationDetailSection = formFactory.createPreservedSpecimenDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 747
 748         addPart(section);
 749         addPart(derivedUnitBaseDetailSection);
 750         addPart(determinationDetailSection);
 751     }
 752
 753     private void createTissueSampleSection(RootElement parent) {
 754         destroySections();
 755
 756         TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 757
 758         addPart(section);
 759     }
 760
 761     private void createDnaSampleSection(RootElement parent) {
 762         destroySections();
 763
 764         DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 765
 766         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 767
 768         DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 769
 770         addPart(section);
 771         addPart(qualitySection);
 772     }
 773
 774     private void createAmplificationSection(RootElement parent) {
 775         destroySections();
 776         AmplificationGeneralDetailSection generalSection = formFactory.createAmplificationGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 777
 778         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 779
 780         AmplificationPrimerDetailSection primerSection = formFactory.createAmplificationPrimerDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 781
 782         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 783
 784         AmplificationCloningDetailSection cloningSection = formFactory.createAmplificationCloningDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 785
 786         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 787
 788         AmplificationGelPhotoCollectionDetailSection gelPhotoSection = formFactory.createAmplificationGelPhotoCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 789
 790
 791         addPart(generalSection);
 792         addPart(primerSection);
 793         addPart(cloningSection);
 794         addPart(gelPhotoSection);
 795     }
 796
 797     private void createSequenceSection(RootElement parent) {
 798         destroySections();
 799
 800         SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 801
 802         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 803
 804         SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 805
 806         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 807
 808         SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 809
 810
 811         addPart(section);
 812         addPart(referenceSection);
 813         addPart(contigFileSection);
 814     }
 815
 816     private void createSingleReadSection(RootElement parent) {
 817         destroySections();
 818
 819         SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 820
 821         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 822
 823         SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 824
 825         addPart(section);
 826         addPart(pherogramSection);
 827     }
 828
 829     private void createSpecimenScanSection(RootElement parent) {
 830         destroySections();
 831         SpecimenScanGeneralDetailSection section = formFactory.createSpecimenScanGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 832
 833         addPart(section);
 834     }
 835
 836     private void createLivingPlantPhotoSection(RootElement parent) {
 837         destroySections();
 838         LivingPlantPhotoGeneralDetailSection section = formFactory.createLivingPlantPhotoGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 839
 840         addPart(section);
 841     }
 842
 843     private void createMediaSpecimenSection(RootElement parent) {
 844         destroySections();
 845         MediaSpecimenGeneralDetailSection section = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 846
 847         addPart(section);
 848     }
 849
 850
 851
 852     /**
 853      * @param rootElement
 854      */
 855     private void createFeatureDistributionSection(RootElement parent) {
 856         destroySections();
 857
 858         FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 859
 860         addPart(featureDistributionSection);
 861     }
 862
 863     /**
 864      * createPolytomousKeyNodeSection
 865      *
 866      * @param parent
 867      */
 868     private void createPolytomousKeyNodeSection(RootElement parent) {
 869         destroySections();
 870
 871         PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.COMPACT);
 872
 873         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 874
 875         PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 876
 877         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 878
 879         TaxonomicScopeSection taxonomicScopeSection = formFactory.createTaxonomicScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.COMPACT);
 880
 881         addPart(polytomousKeyDetailSection);
 882         addPart(polytomousKeyNodeDetailSection);
 883         addPart(taxonomicScopeSection);
 884
 885     }
 886
 887     /**
 888      * create the UseRecordSection
 889      *
 890      * @param parent
 891      */
 892     private void createUseRecordSection(RootElement parent) {
 893         destroySections();
 894
 895         UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 896
 897         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 898
 899         addPart(descriptionUseRecordSection);
 900
 901
 902     }
 903
 904     /**
 905      * createUserSection
 906      *
 907      * @param parent
 908      */
 909     private void createUserSection(RootElement parent) {
 910         destroySections();
 911
 912         UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 913
 914         GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 915
 916         addPart(userDetailSection);
 917         addPart(groupByUserDetailSection);
 918     }
 919
 920     /**
 921      * createTaxonRelationshipSection
 922      *
 923      * @param parent
 924      */
 925     private void createTaxonRelationshipSection(RootElement parent) {
 926         destroySections();
 927
 928         TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 929
 930         ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 931         addPart(taxonRelationshipDetailSection);
 932         addPart(referencedEntityBaseDetailSection);
 933     }
 934
 935     /**
 936      * @param rootElement
 937      */
 938     private void createTermVocabularySection(RootElement parent) {
 939         destroySections();
 940
 941         TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 942         addPart(termVocabularyDetailSection);
 943     }
 944
 945     /**
 946      * createDefinedTermSection
 947      *
 948      * @param parent
 949      */
 950     private void createDefinedTermSection(RootElement parent) {
 951         destroySections();
 952
 953         AbstractFormSection definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 954         addPart(definedTermDetailSection);
 955     }
 956
 957 }