eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/detail/DetailsViewer.java

   1
   2 // $Id$
   3 /**
   4  * Copyright (C) 2011 EDIT
   5  * European Distributed Institute of Taxonomy
   6  * http://www.e-taxonomy.eu
   7  *
   8  * The contents of this file are subject to the Mozilla Public License Version 1.1
   9  * See LICENSE.TXT at the top of this package for the full license terms.
  10  */
  11
  12 package eu.etaxonomy.taxeditor.view.detail;
  13
  14 import java.util.Set;
  15
  16 import org.eclipse.jface.viewers.ISelection;
  17 import org.eclipse.jface.viewers.SelectionChangedEvent;
  18 import org.eclipse.jface.viewers.TreeNode;
  19 import org.eclipse.swt.SWT;
  20 import org.eclipse.swt.widgets.Composite;
  21 import org.eclipse.ui.forms.widgets.ExpandableComposite;
  22
  23 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
  24 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
  25 import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
  26 import eu.etaxonomy.cdm.model.agent.Person;
  27 import eu.etaxonomy.cdm.model.agent.Team;
  28 import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
  29 import eu.etaxonomy.cdm.model.common.DefinedTermBase;
  30 import eu.etaxonomy.cdm.model.common.Group;
  31 import eu.etaxonomy.cdm.model.common.Marker;
  32 import eu.etaxonomy.cdm.model.common.TermVocabulary;
  33 import eu.etaxonomy.cdm.model.common.User;
  34 import eu.etaxonomy.cdm.model.description.CategoricalData;
  35 import eu.etaxonomy.cdm.model.description.DescriptionBase;
  36 import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
  37 import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
  38 import eu.etaxonomy.cdm.model.description.SpecimenDescription;
  39 import eu.etaxonomy.cdm.model.media.Media;
  40 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  41 import eu.etaxonomy.cdm.model.molecular.Sequence;
  42 import eu.etaxonomy.cdm.model.molecular.SingleRead;
  43 import eu.etaxonomy.cdm.model.name.NonViralName;
  44 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
  45 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
  46 import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
  47 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
  48 import eu.etaxonomy.cdm.model.reference.Reference;
  49 import eu.etaxonomy.cdm.model.taxon.TaxonBase;
  50 import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
  51 import eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap;
  52 import eu.etaxonomy.taxeditor.model.AbstractUtility;
  53 import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
  54 import eu.etaxonomy.taxeditor.model.IDerivedUnitFacadePart;
  55 import eu.etaxonomy.taxeditor.model.MessagingUtils;
  56 import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
  57 import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
  58 import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
  59 import eu.etaxonomy.taxeditor.store.UsageTermCollection;
  60 import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
  61 import eu.etaxonomy.taxeditor.ui.element.RootElement;
  62 import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
  63 import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
  64 import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
  65 import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
  66 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
  67 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
  68 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
  69 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
  70 import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
  71 import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
  72 import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
  73 import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
  74 import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
  75 import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
  76 import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
  77 import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
  78 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
  79 import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
  80 import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
  81 import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
  82 import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
  83 import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
  84 import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
  85 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
  86 import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
  87 import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
  88 import eu.etaxonomy.taxeditor.ui.section.occurrence.EmptySection;
  89 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
  90 import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
  91 import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
  92 import eu.etaxonomy.taxeditor.ui.section.occurrence.association.DerivedUnitTypeDesignationSection;
  93 import eu.etaxonomy.taxeditor.ui.section.occurrence.association.TaxonAssociationDetailSection;
  94 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
  95 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
  96 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSamplePreparationPreservationSection;
  97 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SampleDesignationDetailSection;
  98 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
  99 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
 100 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
 101 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
 102 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
 103 import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
 104 import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
 105 import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
 106 import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
 107 import eu.etaxonomy.taxeditor.ui.section.supplemental.RightsSection;
 108 import eu.etaxonomy.taxeditor.ui.section.supplemental.identifier.DerivedUnitFacadeIdentifierSection;
 109 import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
 110 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
 111 import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
 112 import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
 113 import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
 114 import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
 115 import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
 116 import eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer;
 117 import eu.etaxonomy.taxeditor.view.AbstractCdmViewPart;
 118
 119 /**
 120  *
 121  * The DetailsViewer handles the content of the details view (
 122  * {@link DetailsViewPart}).<br>
 123  * Depending on the type of the selected element the section of the details view
 124  * are created.
 125  *
 126  * @author n.hoffmann
 127  * @created Feb 12, 2010
 128  * @version 1.0
 129  */
 130 public class DetailsViewer extends AbstractCdmDataViewer {
 131
 132     private ISelection selection;
 133
 134     public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
 135         super(parent, viewPart);
 136     }
 137
 138     // START HACK TO MAKE THE DERIVED UNIT FACADE WORK
 139     // since we are getting implementations of DerivedUnitBase from the bulk
 140     // editor
 141     // and not derived unit facade objects,
 142
 143     @Override
 144     public void setInput(Object input) {
 145         if(input instanceof TreeNode){
 146             input = ((TreeNode) input).getValue();
 147         }
 148         if(input instanceof GbifResponse){
 149             input = ((GbifResponse) input).getDerivedUnitFacade();
 150         }
 151         if (input.getClass().equals(DerivedUnit.class)) {
 152             DerivedUnit derivedUnit = (DerivedUnit)input;
 153             try {
 154                 input = DerivedUnitFacade.NewInstance(derivedUnit,
 155                         PreferencesUtil.getDerivedUnitConfigurator());
 156             } catch (DerivedUnitFacadeNotSupportedException e) {
 157 //                MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
 158             }
 159         }
 160         else if(input instanceof FieldUnit){
 161             input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
 162         }
 163         super.setInput(input);
 164     }
 165
 166     @Override
 167     protected void markViewPartDirty() {
 168         if (getInput() instanceof DerivedUnitFacade) {
 169             DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
 170             if(facade.innerDerivedUnit()!=null){
 171                 getViewPart().changed(facade.innerDerivedUnit());
 172             }
 173             else if(facade.innerFieldUnit()!=null){
 174                 getViewPart().changed(facade.innerFieldUnit());
 175             }
 176         }
 177         else{
 178             super.markViewPartDirty();
 179         }
 180     }
 181
 182     // END HACK TO MAKE THE DERIVED UNIT FACADE WORK
 183
 184
 185     /** {@inheritDoc} */
 186     @Override
 187     protected void showParts() {
 188         // FIXME (CM) : Need to clean out this code.
 189         // Too much type checking to decide which detail view to display.
 190         // Need to build in a mechanism where navigators / editors are 'aware'
 191         // of the corresponding detail viewer.
 192         Object input = getInput();
 193
 194         destroySections();
 195         if (input instanceof TaxonBase) {
 196             if(((TaxonBase) input).getName()==null){
 197                 createEmptySection(rootElement);
 198             }
 199             else{
 200                 createTaxonSections(rootElement);
 201             }
 202
 203         } else if (input instanceof NonViralName) {
 204             createNameSections(rootElement);
 205
 206         } else if (input instanceof Reference) {
 207             createReferenceSections(rootElement);
 208
 209         } else if (input instanceof Team) {
 210             createTeamDetailSection(rootElement);
 211
 212         } else if (input instanceof Person) {
 213             createPersonDetailSection(rootElement);
 214
 215         } else if (input instanceof TeamOrPersonBase) {
 216             createTeamOrPersonBaseDetailSection(rootElement);
 217
 218         } else if (input instanceof DescriptionBase) {
 219             if(input instanceof SpecimenDescription){
 220                 //TODO: add more sections to DetailsView for SpecimenDescription
 221                 createSpecimenDescriptionSection(rootElement);
 222             }
 223             else{
 224                 Set<Marker> descriptionMarkers = ((DescriptionBase<?>) input).getMarkers();
 225
 226                 Boolean isUseDescription = false;
 227                 for (Marker marker : descriptionMarkers) {
 228                     if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
 229                         isUseDescription = true;
 230                     }
 231                 }
 232                 if (((DescriptionBase<?>) input).isImageGallery()) {
 233                     createImageGallerySection(rootElement);
 234
 235                 } else if (isUseDescription) {
 236                     createUseDescriptionSection(rootElement);
 237                 } else {
 238                     createDescriptionSection(rootElement);
 239
 240                 }
 241             }
 242         } else if (input instanceof DescriptionElementBase) {
 243             Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
 244
 245             Boolean isUseDescription = false;
 246             for (Marker marker : descriptionMarkers) {
 247                 if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
 248                     isUseDescription = true;
 249                 }
 250             }
 251
 252             if (isUseDescription == true && input instanceof CategoricalData) {
 253                 createUseRecordSection(rootElement);
 254             } else {
 255                 createDescriptionElementSection(rootElement);
 256             }
 257
 258         } else if (input instanceof Media) {
 259             createMediaElementSection(rootElement);
 260
 261         } else if (input instanceof DerivedUnitFacade) {
 262             if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
 263                 if(((DerivedUnitFacade) input).innerFieldUnit()==null){
 264                     MessagingUtils.error(DetailsViewer.class, "FieldUnit of facade is null", null);
 265                 }
 266                 else{
 267                     createFieldUnitSection(rootElement);
 268                 }
 269             }
 270             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
 271                 if(((DerivedUnitFacade) input).innerDerivedUnit()==null){
 272                     MessagingUtils.error(DetailsViewer.class, "DerivedUnit of facade is null", null);
 273                 }
 274                 else{
 275                     createDerivedUnitBaseElementSection(rootElement);
 276                 }
 277             }
 278             else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
 279                 //TissueSample should only be created by using it's own class
 280                 //in future using only one class with different SpecimenOrObservationTypes is desired
 281 //                createTissueSampleSection(rootElement);
 282             }
 283             else{
 284                 createDerivedUnitBaseElementSection(rootElement);
 285             }
 286         } else if (input instanceof DnaSample){
 287             DnaSample dnaSample = (DnaSample)input;
 288             if(dnaSample.getRecordBasis()==SpecimenOrObservationType.TissueSample){
 289                 createTissueSampleSection(rootElement);
 290             }
 291             else if(dnaSample.getRecordBasis()==SpecimenOrObservationType.DnaSample){
 292                 createDnaSampleSection(rootElement);
 293             }
 294         } else if (input instanceof MediaSpecimen){
 295             createMediaSpecimenSection(rootElement);
 296         }
 297         else if(input instanceof Sequence){
 298             createSequenceSection(rootElement);
 299         }
 300         else if(input instanceof SingleRead){
 301             createSingleReadSection(rootElement);
 302         }
 303         else if (input instanceof FeatureNodeContainer) {
 304             createFeatureDistributionSection(rootElement);
 305
 306         }else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
 307             createPolytomousKeyNodeSection(rootElement);
 308         } else if (input instanceof User) {
 309             createUserSection(rootElement);
 310         } else if (input instanceof Group) {
 311             createGroupSection(rootElement);
 312         } else if (input instanceof TaxonRelationship) {
 313             createTaxonRelationshipSection(rootElement);
 314         } else if (input instanceof TermVocabulary) {
 315             createTermVocabularySection(rootElement);
 316         } else if (input instanceof DefinedTermBase) {
 317             createDefinedTermSection(rootElement);
 318         }
 319         else {
 320             createEmptySection(rootElement);
 321         }
 322         layout();
 323     }
 324
 325
 326     private void createEmptySection(RootElement parent) {
 327         destroySections();
 328
 329         EmptySection emptySection = formFactory.createEmptySection(formFactory, parent, SWT.NONE);
 330
 331         addPart(emptySection);
 332     }
 333
 334     private void createGroupSection(RootElement parent) {
 335         destroySections();
 336
 337         GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE| ExpandableComposite.EXPANDED);
 338         MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 339         GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 340
 341         addPart(groupDetailSection);
 342         addPart(memberDetailSection);
 343         addPart(grantedAuthorityDetailSection);
 344     }
 345
 346     /** {@inheritDoc} */
 347     @Override
 348     public ISelection getSelection() {
 349         return selection;
 350     }
 351
 352     /** {@inheritDoc} */
 353     @Override
 354     public void setSelection(ISelection selection, boolean reveal) {
 355         this.selection = selection;
 356         if(this.selection!=null){
 357             SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
 358             fireSelectionChanged(selectionChangedEvent);
 359         }
 360     }
 361
 362     private void createTaxonSections(RootElement parent) {
 363         destroySections();
 364
 365         ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
 366                 ExpandableComposite.EXPANDED | ExpandableComposite.EXPANDED);
 367         if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION)){
 368             TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
 369                         ExpandableComposite.TWISTIE     | ExpandableComposite.EXPANDED);
 370             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 371
 372             addPart(taxonBaseDetailSection);
 373         }
 374         NonViralNameDetailSection nonViralNameSection = formFactory
 375                 .createNonViralNameDetailSection(getConversationHolder(), parent, this, true,
 376                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 377         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 378         if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION)){
 379             NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
 380                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 381             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 382
 383             NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
 384                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 385             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 386
 387             addPart(nomenclaturalStatusSection);
 388             addPart(referenceDetailSection);
 389         }
 390         //TODO RL
 391         if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)  && !PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION)){
 392                 ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 393                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 394
 395                 TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 396                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 397
 398                 NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 399                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 400
 401                         addPart(protologSection);
 402                         addPart(typeDesignationSection);
 403                         addPart(nameRelationshipSection);
 404         }
 405
 406         addPart(parsingMessagesSection);
 407
 408         addPart(nonViralNameSection);
 409
 410     }
 411
 412     private void createNameSections(RootElement parent) {
 413         destroySections();
 414         NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(
 415                 getConversationHolder(), parent, this, false, ExpandableComposite.TWISTIE
 416                         | ExpandableComposite.EXPANDED);
 417         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 418
 419         NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
 420                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 421         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 422
 423         NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
 424                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 425         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 426
 427         addPart(nonViralNameSection);
 428         addPart(nomenclaturalStatusSection);
 429         addPart(referenceDetailSection);
 430 //TODO RL
 431         if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.IS_RL)){
 432                         ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 433                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 434
 435                 TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 436                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 437
 438                 NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 439                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 440                 addPart(protologSection);
 441                 addPart(typeDesignationSection);
 442                 addPart(nameRelationshipSection);
 443         }
 444     }
 445
 446     private void createReferenceSections(RootElement parent) {
 447         destroySections();
 448
 449         ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
 450                         ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 451
 452         addPart(referenceDetailSection);
 453     }
 454
 455     private void createTeamOrPersonBaseDetailSection(RootElement parent) {
 456         destroySections();
 457         TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 458
 459         addPart(teamOrPersonBaseDetailSection);
 460     }
 461
 462     private void createTeamDetailSection(RootElement parent) {
 463         destroySections();
 464         TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 465
 466         addPart(teamDetailSection);
 467     }
 468
 469     private void createPersonDetailSection(RootElement parent) {
 470         destroySections();
 471         PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 472         addPart(personDetailSection);
 473     }
 474
 475     private void createDescriptionElementSection(RootElement parent) {
 476         destroySections();
 477
 478         DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 479
 480         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 481
 482         DescriptionElementSourceSection descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 483
 484         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 485
 486         DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 487
 488         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 489
 490         addPart(descriptionElementDetailSection);
 491         addPart(descriptionElementSourceSection);
 492         addPart(descriptionElementMediaSection);
 493     }
 494
 495     private void createDescriptionSection(RootElement parent) {
 496         destroySections();
 497         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 498
 499         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 500
 501         NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 502
 503         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 504
 505 //        DescribedSpecimenSection describedSpecimenSection = formFactory.createDescribedSpecimenSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 506 //
 507 //        formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 508
 509         //              DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
 510         //                              .createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
 511         //                                              getConversationHolder(), parent, Section.TWISTIE);
 512         //
 513         //              formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 514
 515         ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 516
 517         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 518
 519         addPart(descriptionDetailSection);
 520         addPart(naturalLanguageSection);
 521 //        addPart(describedSpecimenSection);
 522         //              addPart(descriptionSourceSection);
 523         addPart(scopeSection);
 524     }
 525
 526     private void createSpecimenDescriptionSection(RootElement parent) {
 527         destroySections();
 528         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 529         addPart(descriptionDetailSection);
 530     }
 531
 532     private void createUseDescriptionSection(RootElement parent) {
 533         destroySections();
 534         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 535
 536         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 537
 538         DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 539
 540         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 541
 542         addPart(descriptionDetailSection);
 543         addPart(descriptionSourceSection);
 544
 545     }
 546
 547     private void createImageGallerySection(RootElement parent) {
 548         destroySections();
 549         DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 550
 551         addPart(descriptionDetailSection);
 552     }
 553
 554     private void createMediaElementSection(RootElement parent) {
 555         destroySections();
 556
 557         MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 558
 559         addPart(mediaDetailSection);
 560     }
 561
 562     private void createDerivedUnitBaseElementSection(RootElement parent) {
 563         destroySections();
 564
 565         DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 566         //TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
 567         if(!(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart)){
 568             derivedUnitGeneralDetailSection.setShowOnlyDerivedUnitData(true);
 569         }
 570         addPart(derivedUnitGeneralDetailSection);
 571
 572         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 573
 574         DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 575         addPart(derivedUnitBaseDetailSection);
 576
 577         //for editors working with facades
 578         if(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart){
 579             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 580             GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 581             addPart(gatheringEventDetailSection);
 582
 583             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 584             FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 585             addPart(fieldUnitDetailSection);
 586         }
 587         else{
 588
 589             if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_TAXON_ASSOCIATIONS)){
 590                 formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 591                 TaxonAssociationDetailSection taxonAssociationDetailSection = formFactory.createTaxonAssociationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 592                 addPart(taxonAssociationDetailSection);
 593             }
 594             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 595             DerivedUnitFacadeIdentifierSection identifierDetailSection = formFactory.createDerivedUnitFacadeIdentifierSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 596             addPart(identifierDetailSection);
 597         }
 598         if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
 599             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 600             DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 601             addPart(determinationDetailSection);
 602         }
 603
 604         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 605         DerivedUnitTypeDesignationSection derivedUnitTypeDesignationSection = formFactory.createDerivedUnitTypeDesignationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 606         addPart(derivedUnitTypeDesignationSection);
 607
 608     }
 609
 610     private void createFieldUnitSection(RootElement parent) {
 611         destroySections();
 612
 613         FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 614
 615         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 616
 617         GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 618
 619         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 620
 621         FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 622
 623         addPart(fielUnitGeneralDetailSection);
 624         addPart(gatheringEventDetailSection);
 625         addPart(fieldUnitDetailSection);
 626
 627         if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
 628             formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 629             DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 630             addPart(determinationDetailSection);
 631         }
 632     }
 633
 634     private void createTissueSampleSection(RootElement parent) {
 635         destroySections();
 636
 637         TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 638
 639         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 640
 641         SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 642
 643         addPart(section);
 644         addPart(sampleDesignationDetailSection);
 645     }
 646
 647     private void createDnaSampleSection(RootElement parent) {
 648         destroySections();
 649
 650         DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 651
 652         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 653
 654         DnaSamplePreparationPreservationSection preparationPreservationSection = formFactory.createDnaSamplePreparationPreservationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 655
 656         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 657
 658         DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 659
 660         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 661
 662         SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 663
 664         addPart(section);
 665         addPart(preparationPreservationSection);
 666         addPart(qualitySection);
 667         addPart(sampleDesignationDetailSection);
 668     }
 669
 670     private void createSequenceSection(RootElement parent) {
 671         destroySections();
 672
 673         SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 674
 675         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 676
 677         SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 678
 679         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 680
 681         SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 682
 683
 684         addPart(section);
 685         addPart(referenceSection);
 686         addPart(contigFileSection);
 687     }
 688
 689     private void createSingleReadSection(RootElement parent) {
 690         destroySections();
 691
 692         SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 693         addPart(section);
 694
 695         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 696
 697         SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 698         addPart(pherogramSection);
 699
 700     }
 701
 702     private void createMediaSpecimenSection(RootElement parent) {
 703         destroySections();
 704
 705         MediaSpecimenGeneralDetailSection generalSection = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 706         addPart(generalSection);
 707
 708         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 709
 710         RightsSection rightsSection = formFactory.createRightsSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
 711         addPart(rightsSection);
 712
 713     }
 714
 715     private void createFeatureDistributionSection(RootElement parent) {
 716         destroySections();
 717
 718         FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 719
 720         addPart(featureDistributionSection);
 721     }
 722
 723     private void createPolytomousKeyNodeSection(RootElement parent) {
 724         destroySections();
 725
 726         PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
 727
 728         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 729
 730         PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 731
 732         addPart(polytomousKeyDetailSection);
 733         addPart(polytomousKeyNodeDetailSection);
 734
 735     }
 736
 737     private void createUseRecordSection(RootElement parent) {
 738         destroySections();
 739
 740         UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 741
 742         formFactory.createHorizontalSeparator(parent, SWT.BORDER);
 743
 744         addPart(descriptionUseRecordSection);
 745
 746
 747     }
 748
 749     private void createUserSection(RootElement parent) {
 750         destroySections();
 751
 752         UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 753
 754         GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 755
 756         addPart(userDetailSection);
 757         addPart(groupByUserDetailSection);
 758     }
 759
 760     private void createTaxonRelationshipSection(RootElement parent) {
 761         destroySections();
 762
 763         TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 764
 765         ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 766         addPart(taxonRelationshipDetailSection);
 767         addPart(referencedEntityBaseDetailSection);
 768     }
 769
 770     private void createTermVocabularySection(RootElement parent) {
 771         destroySections();
 772
 773         TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 774         addPart(termVocabularyDetailSection);
 775     }
 776
 777     private void createDefinedTermSection(RootElement parent) {
 778         destroySections();
 779
 780         AbstractFormSection<?> definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
 781         addPart(definedTermDetailSection);
 782     }
 783
 784         @Override
 785         public void update(CdmDataChangeMap arg0) {
 786
 787         }
 788
 789 }