eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/SpecimenImportView.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2014 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.editor.view.dataimport;
  11
  12 import java.io.IOException;
  13 import java.io.InputStream;
  14 import java.net.URI;
  15 import java.util.ArrayList;
  16 import java.util.Collection;
  17
  18 import org.apache.http.client.ClientProtocolException;
  19
  20 import eu.etaxonomy.cdm.ext.occurrence.bioCase.BioCaseQueryServiceWrapper;
  21 import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
  22 import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
  23 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
  24 import eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices.TransientCdmRepository;
  25 import eu.etaxonomy.taxeditor.store.CdmStore;
  26
  27 /**
  28  * @author pplitzner
  29  * @date Sep 3, 2014
  30  *
  31  */
  32 public class SpecimenImportView extends DataImportView<SpecimenOrObservationBase<?>> {
  33
  34     public static final String ID = "eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenImportView"; //$NON-NLS-1$
  35
  36     private URI endPoint;
  37
  38     public SpecimenImportView() {
  39     }
  40
  41     /**
  42      * @param endPoint
  43      */
  44     public void setEndpoint(URI endPoint) {
  45         this.endPoint = endPoint;
  46     }
  47
  48     /* (non-Javadoc)
  49      * @see eu.etaxonomy.taxeditor.editor.view.dataimport.DataImportView#getTextForTableItem(java.lang.Object)
  50      */
  51     @Override
  52     protected String getTextForTableItem(SpecimenOrObservationBase<?> item) {
  53         return item.getTitleCache();
  54     }
  55
  56     /* (non-Javadoc)
  57      * @see eu.etaxonomy.taxeditor.editor.view.dataimport.DataImportView#query()
  58      */
  59     @Override
  60     public void query() {
  61         String errorMessage = "Could not execute query " + query;
  62
  63         Collection<SpecimenOrObservationBase<?>> results = new ArrayList<SpecimenOrObservationBase<?>>();
  64         try {
  65             //FIXME move ABCD import to cdmlib -> this will also get rid of the transient services
  66             InputStream resultStream;
  67             resultStream = new BioCaseQueryServiceWrapper().query(query, endPoint);
  68             Abcd206ImportConfigurator configurator = Abcd206ImportConfigurator.NewInstance(resultStream, null, false);
  69             TransientCdmRepository repo =
  70                     new TransientCdmRepository(CdmStore.getCurrentApplicationConfiguration());
  71             configurator.setCdmAppController(repo);
  72             configurator.setAddMediaAsMediaSpecimen(true);
  73             configurator.setDeterminationOnFieldUnitLevel(true);
  74
  75             CdmDefaultImport<Abcd206ImportConfigurator> importer = new CdmDefaultImport<Abcd206ImportConfigurator>();
  76             importer.invoke(configurator);
  77             results = repo.getUnits();
  78             setResults(results);
  79         } catch (ClientProtocolException e) {
  80             logger.error(errorMessage, e);
  81         } catch (IOException e) {
  82             logger.error(errorMessage, e);
  83         }
  84
  85         setResults(results);
  86
  87     }
  88
  89 }