eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientOccurenceService.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
  11
  12 import java.io.IOException;
  13 import java.util.Collection;
  14 import java.util.HashSet;
  15 import java.util.List;
  16 import java.util.Map;
  17 import java.util.Set;
  18 import java.util.UUID;
  19
  20 import org.apache.lucene.index.CorruptIndexException;
  21 import org.apache.lucene.queryParser.ParseException;
  22 import org.hibernate.LockOptions;
  23 import org.hibernate.Session;
  24 import org.hibernate.criterion.Criterion;
  25 import org.hibernate.envers.query.criteria.AuditCriterion;
  26 import org.hibernate.search.spatial.impl.Rectangle;
  27
  28 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
  29 import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
  30 import eu.etaxonomy.cdm.api.service.DeleteResult;
  31 import eu.etaxonomy.cdm.api.service.IOccurrenceService;
  32 import eu.etaxonomy.cdm.api.service.config.DeleteConfiguratorBase;
  33 import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
  34 import eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator;
  35 import eu.etaxonomy.cdm.api.service.dto.FieldUnitDTO;
  36 import eu.etaxonomy.cdm.api.service.dto.FindByIdentifierDTO;
  37 import eu.etaxonomy.cdm.api.service.dto.PreservedSpecimenDTO;
  38 import eu.etaxonomy.cdm.api.service.pager.Pager;
  39 import eu.etaxonomy.cdm.api.service.search.SearchResult;
  40 import eu.etaxonomy.cdm.api.service.util.TaxonRelationshipEdge;
  41 import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
  42 import eu.etaxonomy.cdm.model.common.Annotation;
  43 import eu.etaxonomy.cdm.model.common.CdmBase;
  44 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  45 import eu.etaxonomy.cdm.model.common.ICdmBase;
  46 import eu.etaxonomy.cdm.model.common.ISourceable;
  47 import eu.etaxonomy.cdm.model.common.IdentifiableSource;
  48 import eu.etaxonomy.cdm.model.common.LSID;
  49 import eu.etaxonomy.cdm.model.common.Language;
  50 import eu.etaxonomy.cdm.model.common.Marker;
  51 import eu.etaxonomy.cdm.model.common.MarkerType;
  52 import eu.etaxonomy.cdm.model.description.DescriptionBase;
  53 import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
  54 import eu.etaxonomy.cdm.model.description.IndividualsAssociation;
  55 import eu.etaxonomy.cdm.model.location.Country;
  56 import eu.etaxonomy.cdm.model.media.Media;
  57 import eu.etaxonomy.cdm.model.media.Rights;
  58 import eu.etaxonomy.cdm.model.molecular.DnaSample;
  59 import eu.etaxonomy.cdm.model.molecular.Sequence;
  60 import eu.etaxonomy.cdm.model.molecular.SingleRead;
  61 import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
  62 import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
  63 import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
  64 import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent;
  65 import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
  66 import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
  67 import eu.etaxonomy.cdm.model.taxon.Taxon;
  68 import eu.etaxonomy.cdm.model.taxon.TaxonBase;
  69 import eu.etaxonomy.cdm.model.view.AuditEvent;
  70 import eu.etaxonomy.cdm.model.view.AuditEventRecord;
  71 import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort;
  72 import eu.etaxonomy.cdm.persistence.dto.UuidAndTitleCache;
  73 import eu.etaxonomy.cdm.persistence.query.Grouping;
  74 import eu.etaxonomy.cdm.persistence.query.MatchMode;
  75 import eu.etaxonomy.cdm.persistence.query.OrderHint;
  76 import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy;
  77 import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
  78 import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy;
  79
  80 /**
  81  * @author pplitzner
  82  * @date 26.09.2013
  83  *
  84  */
  85 public class TransientOccurenceService implements IOccurrenceService {
  86
  87     private final IOccurrenceService defaultService;
  88     private final Collection<SpecimenOrObservationBase<?>> units;
  89
  90     /**
  91      * @param defaultService
  92      */
  93     public TransientOccurenceService(IOccurrenceService defaultService) {
  94         this.defaultService = defaultService;
  95         this.units = new HashSet<SpecimenOrObservationBase<?>>();
  96     }
  97
  98     /**
  99      * @param t
 100      * @param pageSize
 101      * @param pageNumber
 102      * @param sort
 103      * @param propertyPaths
 104      * @return
 105      * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
 106      */
 107     @Override
 108     public Pager<AuditEventRecord<SpecimenOrObservationBase>> pageAuditEvents(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber, AuditEventSort sort, List<String> propertyPaths) {
 109         return defaultService.pageAuditEvents(t, pageSize, pageNumber, sort, propertyPaths);
 110     }
 111
 112     /**
 113      * @param annotatedObj
 114      * @param status
 115      * @param pageSize
 116      * @param pageNumber
 117      * @param orderHints
 118      * @param propertyPaths
 119      * @return
 120      * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 121      */
 122     @Override
 123     public Pager<Annotation> getAnnotations(SpecimenOrObservationBase annotatedObj, MarkerType status, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 124         return defaultService.getAnnotations(annotatedObj, status, pageSize, pageNumber, orderHints, propertyPaths);
 125     }
 126
 127     /**
 128      *
 129      * @see eu.etaxonomy.cdm.api.service.IService#clear()
 130      */
 131     @Override
 132     public void clear() {
 133         defaultService.clear();
 134     }
 135
 136     /**
 137      * @param t
 138      * @param lockMode
 139      * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
 140      */
 141     @Override
 142     public void lock(SpecimenOrObservationBase t, LockOptions lockOptions) {
 143         defaultService.lock(t, lockOptions);
 144     }
 145
 146     /**
 147      * @param t
 148      * @param lockMode
 149      * @param propertyPaths
 150      * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
 151      */
 152     @Override
 153     public void refresh(SpecimenOrObservationBase t, LockOptions lockOptions, List<String> propertyPaths) {
 154         defaultService.refresh(t, lockOptions, propertyPaths);
 155     }
 156
 157     /**
 158      *
 159      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
 160      */
 161     @Override
 162     public void updateTitleCache() {
 163         defaultService.updateTitleCache();
 164     }
 165
 166     /**
 167      * @param t
 168      * @return
 169      * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
 170      */
 171     @Override
 172     public AuditEventRecord<SpecimenOrObservationBase> getNextAuditEvent(SpecimenOrObservationBase t) {
 173         return defaultService.getNextAuditEvent(t);
 174     }
 175
 176     /**
 177      * @param annotatableEntity
 178      * @param technical
 179      * @param pageSize
 180      * @param pageNumber
 181      * @param orderHints
 182      * @param propertyPaths
 183      * @return
 184      * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 185      */
 186     @Override
 187     public Pager<Marker> getMarkers(SpecimenOrObservationBase annotatableEntity, Boolean technical, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 188         return defaultService.getMarkers(annotatableEntity, technical, pageSize, pageNumber, orderHints, propertyPaths);
 189     }
 190
 191     /**
 192      * @param clazz
 193      * @param stepSize
 194      * @param cacheStrategy
 195      * @param monitor
 196      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
 197      */
 198     @Override
 199     public void updateTitleCache(Class<? extends SpecimenOrObservationBase> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<SpecimenOrObservationBase> cacheStrategy, IProgressMonitor monitor) {
 200         defaultService.updateTitleCache(clazz, stepSize, cacheStrategy, monitor);
 201     }
 202
 203     /**
 204      * @param t
 205      * @return
 206      * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
 207      */
 208     @Override
 209     public AuditEventRecord<SpecimenOrObservationBase> getPreviousAuditEvent(SpecimenOrObservationBase t) {
 210         return defaultService.getPreviousAuditEvent(t);
 211     }
 212
 213     /**
 214      * @param iso639
 215      * @return
 216      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByIso(java.lang.String)
 217      */
 218     @Override
 219     public Country getCountryByIso(String iso639) {
 220         return defaultService.getCountryByIso(iso639);
 221     }
 222
 223     /**
 224      * @param clazz
 225      * @return
 226      * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
 227      */
 228     @Override
 229     public int count(Class<? extends SpecimenOrObservationBase> clazz) {
 230         return defaultService.count(clazz);
 231     }
 232
 233     /**
 234      * @param name
 235      * @return
 236      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByName(java.lang.String)
 237      */
 238     @Override
 239     public List<Country> getCountryByName(String name) {
 240         return defaultService.getCountryByName(name);
 241     }
 242
 243     /**
 244      * @param type
 245      * @param determinedAs
 246      * @param limit
 247      * @param start
 248      * @param orderHints
 249      * @param propertyPaths
 250      * @return
 251      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#list(java.lang.Class, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 252      */
 253     @Override
 254     public Pager<SpecimenOrObservationBase> list(Class<? extends SpecimenOrObservationBase> type, TaxonBase determinedAs, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
 255         return defaultService.list(type, determinedAs, limit, start, orderHints, propertyPaths);
 256     }
 257
 258     /**
 259      * @param clazz
 260      * @param from
 261      * @param to
 262      * @param criteria
 263      * @param pageSize
 264      * @param pageValue
 265      * @param sort
 266      * @param propertyPaths
 267      * @return
 268      * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
 269      */
 270     @Override
 271     public Pager<AuditEventRecord<SpecimenOrObservationBase>> pageAuditEvents(Class<? extends SpecimenOrObservationBase> clazz, AuditEvent from, AuditEvent to, List<AuditCriterion> criteria, Integer pageSize, Integer pageValue, AuditEventSort sort, List<String> propertyPaths) {
 272         return defaultService.pageAuditEvents(clazz, from, to, criteria, pageSize, pageValue, sort, propertyPaths);
 273     }
 274
 275     /**
 276      * @param lsid
 277      * @return
 278      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
 279      */
 280     @Override
 281     public SpecimenOrObservationBase find(LSID lsid) {
 282         return defaultService.find(lsid);
 283     }
 284
 285     /**
 286      * @param persistentObject
 287      * @return
 288      * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
 289      */
 290     @Override
 291     public DeleteResult delete(SpecimenOrObservationBase persistentObject) {
 292         return defaultService.delete(persistentObject);
 293     }
 294
 295     /**
 296      * @param clazz
 297      * @param technical
 298      * @param pageSize
 299      * @param pageNumber
 300      * @param propertyPaths
 301      * @return
 302      * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
 303      */
 304     @Override
 305     public List<Object[]> groupMarkers(Class<? extends SpecimenOrObservationBase> clazz, Boolean technical, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
 306         return defaultService.groupMarkers(clazz, technical, pageSize, pageNumber, propertyPaths);
 307     }
 308
 309     /**
 310      * @param uuid
 311      * @return
 312      * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
 313      */
 314     @Override
 315     public boolean exists(UUID uuid) {
 316         return defaultService.exists(uuid);
 317     }
 318
 319     /**
 320      * @param x
 321      * @param y
 322      * @return
 323      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
 324      */
 325     @Override
 326     public SpecimenOrObservationBase replace(SpecimenOrObservationBase x, SpecimenOrObservationBase y) {
 327         return defaultService.replace(x, y);
 328     }
 329
 330     /**
 331      * @param uuidSet
 332      * @return
 333      * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
 334      */
 335     @Override
 336     public List<SpecimenOrObservationBase> find(Set<UUID> uuidSet) {
 337         return defaultService.find(uuidSet);
 338     }
 339
 340     /**
 341      * @param t
 342      * @param pageSize
 343      * @param pageNumber
 344      * @param propertyPaths
 345      * @return
 346      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
 347      */
 348     @Override
 349     public Pager<IdentifiableSource> getSources(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
 350         return defaultService.getSources(t, pageSize, pageNumber, propertyPaths);
 351     }
 352
 353     /**
 354      * @param uuid
 355      * @return
 356      * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
 357      */
 358     @Override
 359     public SpecimenOrObservationBase find(UUID uuid) {
 360         return defaultService.find(uuid);
 361     }
 362
 363     /**
 364      * @param id
 365      * @return
 366      * @see eu.etaxonomy.cdm.api.service.IService#find(int)
 367      */
 368     @Override
 369     public SpecimenOrObservationBase find(int id) {
 370         return defaultService.find(id);
 371     }
 372
 373     /**
 374      * @param t
 375      * @param pageSize
 376      * @param pageNumber
 377      * @param propertyPaths
 378      * @return
 379      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
 380      */
 381     @Override
 382     public Pager<Rights> getRights(SpecimenOrObservationBase t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
 383         return defaultService.getRights(t, pageSize, pageNumber, propertyPaths);
 384     }
 385
 386     /**
 387      * @param clazz
 388      * @param technical
 389      * @return
 390      * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
 391      */
 392     @Override
 393     public int countMarkers(Class<? extends SpecimenOrObservationBase> clazz, Boolean technical) {
 394         return defaultService.countMarkers(clazz, technical);
 395     }
 396
 397     /**
 398      * @param occurence
 399      * @param pageSize
 400      * @param pageNumber
 401      * @param propertyPaths
 402      * @return
 403      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMedia(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
 404      */
 405     @Override
 406     public Pager<Media> getMedia(SpecimenOrObservationBase occurence, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
 407         return defaultService.getMedia(occurence, pageSize, pageNumber, propertyPaths);
 408     }
 409
 410     /**
 411      * @param idSet
 412      * @return
 413      * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
 414      */
 415     @Override
 416     public List<SpecimenOrObservationBase> findById(Set<Integer> idSet) {
 417         return defaultService.findById(idSet);
 418     }
 419
 420     /**
 421      * @param clazz
 422      * @param idInSource
 423      * @param idNamespace
 424      * @return
 425      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
 426      */
 427     @Override
 428     public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
 429         return defaultService.getSourcedObjectByIdInSource(clazz, idInSource, idNamespace);
 430     }
 431
 432     /**
 433      * @return
 434      * @see eu.etaxonomy.cdm.api.service.IService#getSession()
 435      */
 436     @Override
 437     public Session getSession() {
 438         return defaultService.getSession();
 439     }
 440
 441     /**
 442      * @return
 443      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
 444      */
 445     @Override
 446     public List<UuidAndTitleCache<SpecimenOrObservationBase>> getUuidAndTitleCache() {
 447         return defaultService.getUuidAndTitleCache();
 448     }
 449
 450     /**
 451      * @param clazz
 452      * @param limit
 453      * @param start
 454      * @param groups
 455      * @param propertyPaths
 456      * @return
 457      * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 458      */
 459     @Override
 460     public List<Object[]> group(Class<? extends SpecimenOrObservationBase> clazz, Integer limit, Integer start, List<Grouping> groups, List<String> propertyPaths) {
 461         return defaultService.group(clazz, limit, start, groups, propertyPaths);
 462     }
 463
 464     /**
 465      * @param occurence
 466      * @param taxonBase
 467      * @param pageSize
 468      * @param pageNumber
 469      * @param propertyPaths
 470      * @return
 471      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
 472      */
 473     @Override
 474     public Pager<DeterminationEvent> getDeterminations(SpecimenOrObservationBase occurence, TaxonBase taxonBase, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
 475         return defaultService.getDeterminations(occurence, taxonBase, pageSize, pageNumber, propertyPaths);
 476     }
 477
 478     /**
 479      * @param clazz
 480      * @param queryString
 481      * @param matchmode
 482      * @param criteria
 483      * @param pageSize
 484      * @param pageNumber
 485      * @param orderHints
 486      * @param propertyPaths
 487      * @return
 488      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 489      */
 490     @Override
 491     public Pager<SpecimenOrObservationBase> findByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 492         return defaultService.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
 493     }
 494
 495     /**
 496      * @param occurence
 497      * @param pageSize
 498      * @param pageNumber
 499      * @param propertyPaths
 500      * @return
 501      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivationEvents(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
 502      */
 503     @Override
 504     public Pager<DerivationEvent> getDerivationEvents(SpecimenOrObservationBase occurence, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
 505         return defaultService.getDerivationEvents(occurence, pageSize, pageNumber, propertyPaths);
 506     }
 507
 508     /**
 509      * @param type
 510      * @param limit
 511      * @param start
 512      * @param orderHints
 513      * @param propertyPaths
 514      * @return
 515      * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 516      */
 517     @Override
 518     public <S extends SpecimenOrObservationBase> List<S> list(Class<S> type, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
 519         return defaultService.list(type, limit, start, orderHints, propertyPaths);
 520     }
 521
 522     /**
 523      * @param clazz
 524      * @param query
 525      * @param pageSize
 526      * @param pageNumber
 527      * @param orderHints
 528      * @param propertyPaths
 529      * @return
 530      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 531      */
 532     @Override
 533     public Pager<SpecimenOrObservationBase> search(Class<? extends SpecimenOrObservationBase> clazz, String query, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 534         return defaultService.search(clazz, query, pageSize, pageNumber, orderHints, propertyPaths);
 535     }
 536
 537     /**
 538      * @param configurator
 539      * @return
 540      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
 541      */
 542     @Override
 543     public Pager<SpecimenOrObservationBase> findByTitle(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> configurator) {
 544         return defaultService.findByTitle(configurator);
 545     }
 546
 547     /**
 548      * @param clazz
 549      * @param queryString
 550      * @param matchmode
 551      * @param criteria
 552      * @return
 553      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
 554      */
 555     @Override
 556     public Integer countByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria) {
 557         return defaultService.countByTitle(clazz, queryString, matchmode, criteria);
 558     }
 559
 560     /**
 561      * @param uuid
 562      * @return
 563      * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
 564      */
 565     @Override
 566     public SpecimenOrObservationBase load(UUID uuid) {
 567         return defaultService.load(uuid);
 568     }
 569
 570     /**
 571      * @param uuid
 572      * @param propertyPaths
 573      * @return
 574      * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
 575      */
 576     @Override
 577     public SpecimenOrObservationBase load(UUID uuid, List<String> propertyPaths) {
 578         return defaultService.load(uuid, propertyPaths);
 579     }
 580
 581     /**
 582      * @param configurator
 583      * @return
 584      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
 585      */
 586     @Override
 587     public Integer countByTitle(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> configurator) {
 588         return defaultService.countByTitle(configurator);
 589     }
 590
 591     /**
 592      * @return
 593      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnitUuidAndTitleCache()
 594      */
 595     @Override
 596     public List<UuidAndTitleCache<FieldUnit>> getFieldUnitUuidAndTitleCache() {
 597         return defaultService.getFieldUnitUuidAndTitleCache();
 598     }
 599
 600     /**
 601      * @return
 602      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitUuidAndTitleCache()
 603      */
 604     @Override
 605     public List<UuidAndTitleCache<DerivedUnit>> getDerivedUnitUuidAndTitleCache() {
 606         return defaultService.getDerivedUnitUuidAndTitleCache();
 607     }
 608
 609     /**
 610      * @param transientObject
 611      * @return
 612      * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
 613      */
 614     @Override
 615     public SpecimenOrObservationBase merge(SpecimenOrObservationBase transientObject) {
 616         return defaultService.merge(transientObject);
 617     }
 618
 619     /**
 620      * @param derivedUnit
 621      * @param propertyPaths
 622      * @return
 623      * @throws DerivedUnitFacadeNotSupportedException
 624      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitFacade(eu.etaxonomy.cdm.model.occurrence.DerivedUnit, java.util.List)
 625      */
 626     @Override
 627     public DerivedUnitFacade getDerivedUnitFacade(DerivedUnit derivedUnit, List<String> propertyPaths) throws DerivedUnitFacadeNotSupportedException {
 628         return defaultService.getDerivedUnitFacade(derivedUnit, propertyPaths);
 629     }
 630
 631     /**
 632      * @param clazz
 633      * @param queryString
 634      * @param matchmode
 635      * @param criteria
 636      * @param pageSize
 637      * @param pageNumber
 638      * @param orderHints
 639      * @param propertyPaths
 640      * @return
 641      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 642      */
 643     @Override
 644     public List<SpecimenOrObservationBase> listByTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 645         return defaultService.listByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
 646     }
 647
 648     /**
 649      * @param description
 650      * @param propertyPaths
 651      * @return
 652      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDerivedUnitFacades(eu.etaxonomy.cdm.model.description.DescriptionBase, java.util.List)
 653      */
 654     @Override
 655     public List<DerivedUnitFacade> listDerivedUnitFacades(DescriptionBase description, List<String> propertyPaths) {
 656         return defaultService.listDerivedUnitFacades(description, propertyPaths);
 657     }
 658
 659     /**
 660      * @param type
 661      * @param pageSize
 662      * @param pageNumber
 663      * @param orderHints
 664      * @param propertyPaths
 665      * @return
 666      * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 667      */
 668     @Override
 669     public <S extends SpecimenOrObservationBase> Pager<S> page(Class<S> type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 670         return defaultService.page(type, pageSize, pageNumber, orderHints, propertyPaths);
 671     }
 672
 673     /**
 674      * @param type
 675      * @param includeRelationships
 676      * @param associatedTaxon
 677      * @param maxDepth
 678      * @param pageSize
 679      * @param pageNumber
 680      * @param orderHints
 681      * @param propertyPaths
 682      * @return
 683      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 684      */
 685     @Override
 686     public <T extends SpecimenOrObservationBase> List<T> listByAssociatedTaxon(Class<T> type, Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 687         return defaultService.listByAssociatedTaxon(type, includeRelationships, associatedTaxon, maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
 688     }
 689
 690     /**
 691      * @param persistentObject
 692      * @return
 693      * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
 694      */
 695     @Override
 696     public UUID refresh(SpecimenOrObservationBase persistentObject) {
 697         return defaultService.refresh(persistentObject);
 698     }
 699
 700     /**
 701      * @param clazz
 702      * @param queryString
 703      * @param matchmode
 704      * @param criteria
 705      * @param pageSize
 706      * @param pageNumber
 707      * @param orderHints
 708      * @param propertyPaths
 709      * @return
 710      * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 711      */
 712     @Override
 713     public List<SpecimenOrObservationBase> listByReferenceTitle(Class<? extends SpecimenOrObservationBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 714         return defaultService.listByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
 715     }
 716
 717     /**
 718      * @param tableName
 719      * @param limit
 720      * @param start
 721      * @return
 722      * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
 723      */
 724     @Override
 725     public List<SpecimenOrObservationBase> rows(String tableName, int limit, int start) {
 726         return defaultService.rows(tableName, limit, start);
 727     }
 728
 729     /**
 730      * @param newInstances
 731      * @return
 732      * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
 733      */
 734     @Override
 735     public Map<UUID, SpecimenOrObservationBase> save(Collection<SpecimenOrObservationBase> newInstances) {
 736         for(SpecimenOrObservationBase unit:newInstances){
 737             save(unit);
 738         }
 739         return null;
 740     }
 741
 742     /**
 743      * @param type
 744      * @param includeRelationships
 745      * @param associatedTaxon
 746      * @param maxDepth
 747      * @param pageSize
 748      * @param pageNumber
 749      * @param orderHints
 750      * @param propertyPaths
 751      * @return
 752      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 753      */
 754     @Override
 755     public <T extends SpecimenOrObservationBase> Pager<T> pageByAssociatedTaxon(Class<T> type, Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 756         return defaultService.pageByAssociatedTaxon(type, includeRelationships, associatedTaxon, maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
 757     }
 758
 759     /**
 760      * @param newInstance
 761      * @return
 762      * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
 763      */
 764     @Override
 765     public SpecimenOrObservationBase save(SpecimenOrObservationBase newInstance) {
 766         units.add(newInstance);
 767         return null;
 768     }
 769
 770     /**
 771      * @param transientObject
 772      * @return
 773      * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
 774      */
 775     @Override
 776     public UUID saveOrUpdate(SpecimenOrObservationBase transientObject) {
 777         units.add(transientObject);
 778         return null;
 779     }
 780
 781     /**
 782      * @param transientObjects
 783      * @return
 784      * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
 785      */
 786     @Override
 787     public Map<UUID, SpecimenOrObservationBase> saveOrUpdate(Collection<SpecimenOrObservationBase> transientObjects) {
 788         for(SpecimenOrObservationBase unit:transientObjects){
 789             saveOrUpdate(unit);
 790         }
 791         return null;
 792     }
 793
 794     /**
 795      * @param clazz
 796      * @param queryString
 797      * @param boundingBox
 798      * @param languages
 799      * @param highlightFragments
 800      * @param pageSize
 801      * @param pageNumber
 802      * @param orderHints
 803      * @param propertyPaths
 804      * @return
 805      * @throws CorruptIndexException
 806      * @throws IOException
 807      * @throws ParseException
 808      * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#findByFullText(java.lang.Class, java.lang.String, org.hibernate.search.spatial.impl.Rectangle, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 809      */
 810     @Override
 811     public Pager<SearchResult<SpecimenOrObservationBase>> findByFullText(Class<? extends SpecimenOrObservationBase> clazz, String queryString, Rectangle boundingBox, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) throws CorruptIndexException, IOException, ParseException {
 812         return defaultService.findByFullText(clazz, queryString, boundingBox, languages, highlightFragments, pageSize, pageNumber, orderHints, propertyPaths);
 813     }
 814
 815     /**
 816      * @param transientObject
 817      * @return
 818      * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
 819      */
 820     @Override
 821     public UUID update(SpecimenOrObservationBase transientObject) {
 822         return defaultService.update(transientObject);
 823     }
 824
 825     /**
 826      * @param example
 827      * @param includeProperties
 828      * @param limit
 829      * @param start
 830      * @param orderHints
 831      * @param propertyPaths
 832      * @return
 833      * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
 834      */
 835     @Override
 836     public List<SpecimenOrObservationBase> list(SpecimenOrObservationBase example, Set<String> includeProperties, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
 837         return defaultService.list(example, includeProperties, limit, start, orderHints, propertyPaths);
 838     }
 839
 840     @Override
 841     public int deduplicate(Class<? extends SpecimenOrObservationBase> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
 842         return defaultService.deduplicate(clazz, matchStrategy, mergeStrategy);
 843     }
 844
 845     @Override
 846     public Pager<SpecimenOrObservationBase> findTitleCache(Class<? extends SpecimenOrObservationBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode) {
 847         return defaultService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
 848     }
 849
 850     public Collection<SpecimenOrObservationBase<?>> getUnits() {
 851         return units;
 852     }
 853
 854     @Override
 855     public Collection<FieldUnit> getFieldUnits(UUID derivedUnitUuid) {
 856         return defaultService.getFieldUnits(derivedUnitUuid);
 857     }
 858
 859     @Override
 860     public <T extends SpecimenOrObservationBase> Pager<T> pageByAssociatedTaxon(Class<T> type,
 861             Set<TaxonRelationshipEdge> includeRelationships, String taxonUUID, Integer maxDepth, Integer pageSize,
 862             Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 863         return defaultService.pageByAssociatedTaxon(type, includeRelationships, taxonUUID,
 864                 maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
 865     }
 866
 867     @Override
 868     public boolean moveDerivate(SpecimenOrObservationBase<?> from, SpecimenOrObservationBase<?> to, DerivedUnit derivate) {
 869         return defaultService.moveDerivate(from, to, derivate);
 870     }
 871
 872     @Override
 873     public boolean moveSequence(DnaSample from, DnaSample to, Sequence sequence) {
 874         return defaultService.moveSequence(from, to, sequence);
 875     }
 876
 877         @Override
 878         public DeleteResult isDeletable(SpecimenOrObservationBase object,
 879                         DeleteConfiguratorBase config) {
 880                 return defaultService.isDeletable(object, config);
 881         }
 882
 883     @Override
 884     public int countDeterminations(SpecimenOrObservationBase occurence, TaxonBase taxonbase) {
 885         return defaultService.countDeterminations(occurence, taxonbase);
 886     }
 887
 888         @Override
 889         public SpecimenOrObservationBase findWithoutFlush(UUID uuid) {
 890                 return defaultService.findWithoutFlush(uuid);
 891         }
 892
 893         @Override
 894         public Collection<SpecimenOrObservationBase> listFieldUnitsByAssociatedTaxon(Taxon associatedTaxon,
 895                 List<OrderHint> orderHints, List<String> propertyPaths) {
 896             return defaultService.listFieldUnitsByAssociatedTaxon(associatedTaxon, orderHints, propertyPaths);
 897         }
 898
 899         @Override
 900         public Pager<SpecimenOrObservationBase> pageFieldUnitsByAssociatedTaxon(
 901                 Set<TaxonRelationshipEdge> includeRelationships, Taxon associatedTaxon, Integer maxDepth, Integer pageSize,
 902                 Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
 903             return defaultService.pageFieldUnitsByAssociatedTaxon(includeRelationships, associatedTaxon, maxDepth, pageSize, pageNumber, orderHints, propertyPaths);
 904         }
 905
 906
 907         @Override
 908         public FieldUnitDTO assembleFieldUnitDTO(FieldUnit fieldUnit, UUID associatedTaxonUuid) {
 909             return defaultService.assembleFieldUnitDTO(fieldUnit, associatedTaxonUuid);
 910         }
 911
 912         @Override
 913         public PreservedSpecimenDTO assemblePreservedSpecimenDTO(DerivedUnit derivedUnit) {
 914             return defaultService.assemblePreservedSpecimenDTO(derivedUnit);
 915         }
 916
 917     @Override
 918     public Collection<ICdmBase> getNonCascadedAssociatedElements(SpecimenOrObservationBase<?> specimen) {
 919         return defaultService.getNonCascadedAssociatedElements(specimen);
 920     }
 921
 922     @Override
 923     public DeleteResult deleteDerivateHierarchy(CdmBase from, SpecimenDeleteConfigurator config) {
 924         return defaultService.deleteDerivateHierarchy(from, config);
 925     }
 926
 927     @Override
 928     public DeleteResult delete(SpecimenOrObservationBase<?> specimen, SpecimenDeleteConfigurator config) {
 929         return defaultService.delete(specimen, config);
 930     }
 931
 932     @Override
 933     public Collection<IndividualsAssociation> listIndividualsAssociations(SpecimenOrObservationBase<?> specimen,
 934             Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
 935         return defaultService.listIndividualsAssociations(specimen, limit, start, orderHints, propertyPaths);
 936     }
 937
 938     @Override
 939     public Collection<SpecimenTypeDesignation> listTypeDesignations(SpecimenOrObservationBase<?> specimen,
 940             Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
 941         return defaultService.listTypeDesignations(specimen, limit, start, orderHints, propertyPaths);
 942     }
 943
 944     @Override
 945     public Collection<DescriptionBase<?>> listDescriptionsWithDescriptionSpecimen(
 946             SpecimenOrObservationBase<?> specimen, Integer limit, Integer start, List<OrderHint> orderHints,
 947             List<String> propertyPaths) {
 948         return defaultService.listDescriptionsWithDescriptionSpecimen(specimen, limit, start, orderHints, propertyPaths);
 949     }
 950
 951         @Override
 952         public <S extends SpecimenOrObservationBase>  Pager<FindByIdentifierDTO<S>> findByIdentifier(Class<S> clazz, String identifier, DefinedTerm identifierType, MatchMode matchmode, boolean includeEntity, Integer pageSize, Integer pageNumber, List<String> propertyPaths){
 953                 return defaultService.findByIdentifier(clazz, identifier, identifierType, matchmode, includeEntity, pageSize, pageNumber, propertyPaths);
 954         }
 955
 956         @Override
 957         public Collection<DescriptionElementBase> getCharacterDataForSpecimen(SpecimenOrObservationBase<?> arg0) {
 958             return defaultService.getCharacterDataForSpecimen(arg0);
 959         }
 960
 961         @Override
 962         public Collection<DescriptionElementBase> getCharacterDataForSpecimen(UUID arg0) {
 963             return getCharacterDataForSpecimen(arg0);
 964         }
 965
 966         @Override
 967         public String getMostSignificantIdentifier(DerivedUnit derivedUnit) {
 968             return defaultService.getMostSignificantIdentifier(derivedUnit);
 969         }
 970
 971         @Override
 972         public int countOccurrences(IIdentifiableEntityServiceConfigurator<SpecimenOrObservationBase> config) {
 973             return defaultService.countOccurrences(config);
 974         }
 975
 976         /**
 977          * {@inheritDoc}
 978          */
 979         @Override
 980         public List<DerivedUnit> getAllChildDerivatives(SpecimenOrObservationBase<?> specimen) {
 981             return defaultService.getAllChildDerivatives(specimen);
 982         }
 983
 984         /**
 985          * {@inheritDoc}
 986          */
 987         @Override
 988         public List<SpecimenOrObservationBase<?>> getAllHierarchyDerivatives(SpecimenOrObservationBase<?> specimen) {
 989             return defaultService.getAllHierarchyDerivatives(specimen);
 990         }
 991
 992
 993     /* (non-Javadoc)
 994      * @see eu.etaxonomy.cdm.api.service.IService#delete(java.util.UUID)
 995      */
 996     @Override
 997     public DeleteResult delete(UUID uuid) {
 998         return defaultService.delete(uuid);
 999     }
1000
1001     @Override
1002     public DeleteResult delete(Collection<UUID> arg0) {
1003         return defaultService.delete(arg0);
1004     }
1005
1006     @Override
1007     public DeleteResult deleteSingleRead(SingleRead singleRead, Sequence sequence){
1008         return defaultService.deleteSingleRead(singleRead, sequence);
1009     }
1010
1011     /* (non-Javadoc)
1012      * @see eu.etaxonomy.cdm.api.service.IService#merge(java.util.List)
1013      */
1014     @Override
1015     public List<SpecimenOrObservationBase> merge(List<SpecimenOrObservationBase> arg0) {
1016         return defaultService.merge(arg0);
1017     }
1018
1019
1020 }