2 * Copyright (C) 2015 EDIT
3 * European Distributed Institute of Taxonomy
4 * http://www.e-taxonomy.eu
6 * The contents of this file are subject to the Mozilla Public License Version 1.1
7 * See LICENSE.TXT at the top of this package for the full license terms.
9 package eu
.etaxonomy
.taxeditor
.operation
;
11 import java
.util
.ArrayList
;
12 import java
.util
.Iterator
;
13 import java
.util
.List
;
15 import java
.util
.UUID
;
17 import org
.apache
.log4j
.Logger
;
18 import org
.eclipse
.core
.commands
.ExecutionException
;
19 import org
.junit
.Assert
;
20 import org
.junit
.Ignore
;
21 import org
.junit
.Test
;
22 import org
.unitils
.dbunit
.annotation
.DataSet
;
24 import eu
.etaxonomy
.cdm
.api
.service
.IClassificationService
;
25 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonNodeService
;
26 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
27 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
28 import eu
.etaxonomy
.cdm
.model
.common
.OriginalSourceType
;
29 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementSource
;
30 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
31 import eu
.etaxonomy
.cdm
.model
.description
.TaxonDescription
;
32 import eu
.etaxonomy
.cdm
.model
.description
.TextData
;
33 import eu
.etaxonomy
.cdm
.model
.name
.BotanicalName
;
34 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
35 import eu
.etaxonomy
.cdm
.model
.name
.NonViralName
;
36 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
37 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
38 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
39 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonNode
;
40 import eu
.etaxonomy
.taxeditor
.editor
.name
.operation
.CreateSynonymInExistingHomotypicalGroupOperation
;
41 import eu
.etaxonomy
.taxeditor
.store
.CdmStore
;
50 public class TaxonNameEditorTest
extends BaseOperationTest
{
52 private static final Logger logger
= Logger
.getLogger(TaxonNameEditorTest
.class);
54 ITaxonNodeService taxonNodeService
= getRemoteApplicationController().getTaxonNodeService();
55 ITaxonService taxonService
= getRemoteApplicationController().getTaxonService();
56 IClassificationService classificationService
= getRemoteApplicationController().getClassificationService();
58 Language english
= Language
.getLanguageFromUuid(Language
.uuidEnglish
);
62 public void testAddHomotypicSynonym() throws ExecutionException
{
63 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
65 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
66 Taxon taxon
= taxonNode
.getTaxon();
67 HomotypicalGroup group
= taxon
.getHomotypicGroup();
68 BotanicalName newSynonymName
= BotanicalName
.NewInstance(null);
69 newSynonymName
.setTitleCache("New Synonym", true);
70 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
71 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
73 operation
.execute(monitor
, info
);
74 taxonNodeService
.merge(taxonNode
);
75 Assert
.assertEquals(taxon
.getHomotypicGroup().getTypifiedNames().size(), 2);
76 Assert
.assertEquals(taxon
.getSynonyms().size(), 1);
77 Iterator
<Synonym
> synonymItr
= taxon
.getSynonyms().iterator();
78 Synonym synonym
= synonymItr
.next();
79 Assert
.assertTrue(taxon
.getHomotypicGroup().getTypifiedNames().contains(synonym
.getName()));
83 public void addHeterotypicSynonym() throws ExecutionException
{
84 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
86 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
87 Taxon taxon
= taxonNode
.getTaxon();
88 HomotypicalGroup group
= taxon
.getHomotypicGroup();
89 BotanicalName newSynonymName
= BotanicalName
.NewInstance(null);
90 newSynonymName
.setTitleCache("New Synonym", true);
91 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
92 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
94 operation
.execute(monitor
, info
);
95 taxonNodeService
.merge(taxonNode
);
101 public void addDeleteAddHomotypicSynonym() throws ExecutionException
{
102 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
104 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
105 Taxon taxon
= taxonNode
.getTaxon();
106 HomotypicalGroup group
= taxon
.getHomotypicGroup();
107 BotanicalName newSynonymName
= BotanicalName
.NewInstance(null);
108 newSynonymName
.setTitleCache("New Synonym", true);
109 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
110 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
112 operation
.execute(monitor
, info
);
113 taxonNodeService
.merge(taxonNode
);
114 Assert
.assertEquals(taxon
.getHomotypicGroup().getTypifiedNames().size(), 2);
116 Set
<Synonym
> synonyms
= taxon
.getSynonyms();
117 for(Synonym synonym
: synonyms
) {
118 taxonService
.deleteSynonym(synonym
.getUuid(), null);
121 taxonNodeService
.merge(taxonNode
);
123 newSynonymName
= BotanicalName
.NewInstance(null);
124 newSynonymName
.setTitleCache("Another New Synonym", true);
125 operation
= new CreateSynonymInExistingHomotypicalGroupOperation("Create Synonym In Existing Homotypical Group",
126 undoContext
, taxon
, group
, newSynonymName
, postOperation
);
128 operation
.execute(monitor
, info
);
129 taxonNodeService
.merge(taxonNode
);
133 public void swapSynonymWithAcceptedTaxon() throws ExecutionException
{
134 List
<TaxonNode
> rootEntities
= new ArrayList
<TaxonNode
>();
135 UUID taxonNodeUuid
= UUID
.fromString("d425a971-1abe-4895-9e1f-1e5c8ff1c84c");
136 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
137 rootEntities
.add(taxonNode
);
139 UUID taxonUuid
= UUID
.fromString("9763e5f0-6cd4-4d96-b8a4-4420854f7727");
140 Taxon taxon
= (Taxon
)taxonService
.load(taxonUuid
);
141 TaxonNameBase taxonName
= taxon
.getName();
143 UUID synonymUuid
= UUID
.fromString("1eb173bd-b174-4162-8ff5-5136d8f1e746");
144 Synonym synonym
= (Synonym
)taxonService
.load(synonymUuid
);
145 TaxonNameBase synonymName
= synonym
.getName();
147 taxonService
.swapSynonymAndAcceptedTaxon(synonym
.getUuid(), taxon
.getUuid());
149 Assert
.assertEquals(taxonName
, synonym
.getName());
150 Assert
.assertEquals(synonymName
, taxon
.getName());
154 public void addTaxon() {
155 NonViralName taxonName
= NonViralName
.NewInstance(null);
156 Taxon taxon
= Taxon
.NewInstance(taxonName
, null);
157 taxonService
.merge(taxon
);
162 public void addDescription() {
163 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
165 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
166 Taxon taxon
= taxonNode
.getTaxon();
167 TaxonDescription description
= TaxonDescription
.NewInstance(taxon
);
170 TextData textData
= TextData
.NewInstance();
172 textData
.setFeature(Feature
.ECOLOGY());
173 description
.addElement(textData
);
175 DescriptionElementSource descriptionElementSource
= DescriptionElementSource
.NewInstance(OriginalSourceType
.PrimaryTaxonomicSource
);
176 textData
.addSource(descriptionElementSource
);
179 CdmStore
.getService(ITaxonNodeService
.class).merge(taxonNode
);
186 public void addTaxonNodeCascadeProblem() {
187 UUID taxonNodeUuid
= UUID
.fromString("ce54c396-3694-47f2-abb0-1d7b7e057985");
189 TaxonNode taxonNode
= taxonNodeService
.load(taxonNodeUuid
);
190 Taxon childTaxon
= Taxon
.NewInstance(null, null);
191 TaxonNode childTaxonNode
= taxonNode
.addChildTaxon(childTaxon
, null, null);
192 Taxon grandChildTaxon
= Taxon
.NewInstance(null, null);
193 TaxonNode grandChildTaxonNode
= childTaxonNode
.addChildTaxon(grandChildTaxon
, null, null);
195 CdmStore
.getService(ITaxonNodeService
.class).merge(grandChildTaxonNode
,true);
197 Assert
.assertEquals(taxonNode
.getChildNodes().get(0).getId(), childTaxonNode
.getId());
199 Assert
.assertTrue(childTaxonNode
.treeIndex() != null);
200 Assert
.assertEquals(taxonNode
.getChildNodes().get(0).treeIndex(), childTaxonNode
.treeIndex());
201 Assert
.assertFalse(childTaxon
.getId() == 0);
202 Assert
.assertEquals(taxonNode
.getChildNodes().get(0).getTaxon().getId(), childTaxon
.getId());
204 Assert
.assertTrue(grandChildTaxonNode
.treeIndex() != null);
205 Assert
.assertEquals(taxonNode
.getChildNodes().get(0).getChildNodes().get(0).getId(), grandChildTaxonNode
.getId());
206 Assert
.assertFalse(grandChildTaxon
.getId() == 0);
207 Assert
.assertEquals(taxonNode
.getChildNodes().get(0).getChildNodes().get(0).getTaxon().getId(), grandChildTaxon
.getId());