eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/dataimport/SpecimenSearchWizard.java

   1 /**
   2 * Copyright (C) 2013 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.taxeditor.view.dataimport;
  10
  11 import java.io.IOException;
  12 import java.io.InputStream;
  13 import java.net.URI;
  14
  15 import org.apache.log4j.Logger;
  16 import org.eclipse.core.runtime.IProgressMonitor;
  17 import org.eclipse.core.runtime.IStatus;
  18 import org.eclipse.core.runtime.Status;
  19 import org.eclipse.core.runtime.jobs.Job;
  20 import org.eclipse.jface.viewers.IStructuredSelection;
  21 import org.eclipse.jface.wizard.Wizard;
  22 import org.eclipse.swt.widgets.Display;
  23 import org.eclipse.ui.IImportWizard;
  24 import org.eclipse.ui.IWorkbench;
  25 import org.eclipse.ui.IWorkbenchPage;
  26 import org.eclipse.ui.IWorkbenchWindow;
  27 import org.eclipse.ui.PartInitException;
  28 import org.eclipse.ui.PlatformUI;
  29 import org.w3c.dom.NodeList;
  30
  31 import eu.etaxonomy.cdm.database.DbSchemaValidation;
  32 import eu.etaxonomy.cdm.ext.common.ServiceWrapperBase;
  33 import eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery;
  34 import eu.etaxonomy.cdm.ext.occurrence.bioCase.BioCaseQueryServiceWrapper;
  35 import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
  36
  37 import eu.etaxonomy.cdm.io.specimen.abcd206.in.AbcdParseUtility;
  38 import eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport;
  39 import eu.etaxonomy.cdm.io.specimen.abcd206.in.UnitAssociationWrapper;
  40 import eu.etaxonomy.taxeditor.store.CdmStore;
  41
  42 /**
  43  * Wizard for querying specimen provider.
  44  * @author pplitzner
  45  * @date 11.09.2013
  46  *
  47  */
  48 public class SpecimenSearchWizard extends Wizard implements IImportWizard {
  49     private static final Logger logger = Logger.getLogger(SpecimenSearchWizard.class);
  50
  51     private OccurenceQuery query = null;
  52     private SpecimenProviderSelectionWizardPage providerSelectionPage;
  53     private SpecimenSearchWizardPage searchPage;
  54
  55     /**
  56      * Creates a new SpecimenSearchWizard
  57      */
  58     public SpecimenSearchWizard() {
  59         //default constructor needed for RCP extension points
  60
  61         //check if connected to a data source. If not this will open an error dialog
  62         CdmStore.getCurrentApplicationConfiguration();
  63         this.setWindowTitle("Search Specimens");
  64     }
  65
  66
  67     /* (non-Javadoc)
  68      * @see org.eclipse.jface.wizard.Wizard#performFinish()
  69      */
  70     @Override
  71     public boolean performFinish() {
  72         searchPage.getController().saveLastSate();
  73         providerSelectionPage.getController().saveLastState();
  74         ServiceWrapperBase serviceWrapper;
  75         DataImportView<?> dataImportView = null;
  76         query = searchPage.getQuery();
  77         Abcd206ImportConfigurator configurator =  CdmStore.getImportManager().AbcdConfigurator();
  78         configurator.setOccurenceQuery(query);
  79         configurator.setSourceUri(providerSelectionPage.getEndPoint());
  80         configurator.setAddMediaAsMediaSpecimen(true);
  81         configurator.setDbSchemaValidation(DbSchemaValidation.CREATE);
  82         configurator.setIgnoreAuthorship(true);
  83
  84         //Job job = CdmStore.getImportManager().createIOServiceJob(configurator, new File(source), SOURCE_TYPE.INPUTSTREAM);
  85         //CdmStore.getImportManager().run(job);
  86         try {
  87             serviceWrapper = providerSelectionPage.getQueryServiceWrapper();
  88             InputStream stream = null;
  89
  90             final IWorkbenchWindow window = PlatformUI.getWorkbench().getActiveWorkbenchWindow();
  91             IWorkbenchPage activePart = window.getActivePage();
  92             if (providerSelectionPage.getQueryType().equals(QueryType.BIOCASE)){
  93                 stream =((BioCaseQueryServiceWrapper) serviceWrapper).query(query, configurator.getSourceUri());
  94                 SpecimenImportReport report = new SpecimenImportReport();
  95                 UnitAssociationWrapper unitNodesList = AbcdParseUtility.parseUnitsNodeList(stream, report);
  96                 NodeList nodeList = unitNodesList.getAssociatedUnits();
  97                 String prefix = unitNodesList.getPrefix();
  98                 String associationType = unitNodesList.getAssociationType();
  99                 URI uri =AbcdParseUtility.parseFirstUri(nodeList, report);
 100                 String content = AbcdParseUtility.parseFirstTextContent(nodeList);
 101                 System.out.println(content);
 102
 103
 104                 SpecimenImportView specimenImportView = new SpecimenImportView();
 105                 try {
 106                     specimenImportView = (SpecimenImportView) activePart.showView(SpecimenImportView.ID);
 107                     specimenImportView.setEndpoint(providerSelectionPage.getEndPoint());
 108                     specimenImportView.setQuery(query);
 109                     dataImportView = specimenImportView;
 110                 } catch (PartInitException e) {
 111                     // TODO Auto-generated catch block
 112                     e.printStackTrace();
 113
 114                 }
 115
 116             } else{
 117                 try {
 118
 119                     dataImportView = (GbifResponseImportView) activePart.showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""), IWorkbenchPage.VIEW_ACTIVATE);
 120                     dataImportView.setQuery(query);
 121                         //      (GbifResponseImportView) activePart.showView(GbifResponseImportView.ID);getWorkbench().getActiveWorkbenchWindow().getActivePage()
 122                          // .showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
 123
 124                 } catch (PartInitException e) {
 125                     // TODO Auto-generated catch block
 126                     e.printStackTrace();
 127                 }
 128
 129             }
 130
 131
 132         } catch (IOException e) {
 133             // TODO Auto-generated catch block
 134             e.printStackTrace();
 135         }
 136        // CdmStore.getImportManager().run(configurator);
 137
 138 //        try {
 139 //            switch (providerSelectionPage.getQueryType()) {
 140 //            case BIOCASE:
 141 //                SpecimenImportView specimenImportView = (SpecimenImportView) TaxeditorEditorPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage()
 142 //                        .showView(SpecimenImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
 143 //                specimenImportView.setEndpoint(providerSelectionPage.getEndPoint());
 144 //                dataImportView = specimenImportView;
 145 //                break;
 146 //            case GBIF:
 147 //                dataImportView = (GbifResponseImportView) TaxeditorEditorPlugin.getDefault().getWorkbench().getActiveWorkbenchWindow().getActivePage()
 148 //                .showView(GbifResponseImportView.ID, "query_"+query.toString().replaceAll(",", ""),IWorkbenchPage.VIEW_ACTIVATE);
 149 //                break;
 150 //            }
 151 //        } catch ( PartInitException e ) {
 152 //            logger.error("Could not open import view for query: " + query.toString(), e);
 153 //        }
 154 //        if(dataImportView!=null){
 155 //            dataImportView.setQuery(query);
 156 ////            dataImportView.query();
 157 ////            Display.getDefault().asyncExec(new Runnable() {
 158 ////
 159 ////                @Override
 160 ////                public void run() {
 161 ////                    CdmStore.getContextManager().notifyContextRefresh();
 162 ////                }
 163 ////            });
 164             Job queryJob = new QueryJob("Query specimen provider", dataImportView);
 165             queryJob.schedule();
 166
 167         return true;
 168     }
 169
 170     /* (non-Javadoc)
 171      * @see org.eclipse.jface.wizard.Wizard#addPages()
 172      */
 173     @Override
 174     public void addPages() {
 175         addPage(providerSelectionPage);
 176         addPage(searchPage);
 177     }
 178
 179     /* (non-Javadoc)
 180      * @see org.eclipse.ui.IWorkbenchWizard#init(org.eclipse.ui.IWorkbench, org.eclipse.jface.viewers.IStructuredSelection)
 181      */
 182     @Override
 183     public void init(IWorkbench workbench, IStructuredSelection selection) {
 184         providerSelectionPage = new SpecimenProviderSelectionWizardPage("Select specimen provider");
 185         searchPage = new SpecimenSearchWizardPage("Specimen Search");
 186     }
 187
 188     private class QueryJob extends Job{
 189
 190         private final DataImportView<?> view;
 191
 192         /**
 193          * @param name
 194          */
 195         public QueryJob(String name, DataImportView<?> view) {
 196             super(name);
 197             this.view = view;
 198         }
 199
 200         /* (non-Javadoc)
 201          * @see org.eclipse.core.runtime.jobs.Job#run(org.eclipse.core.runtime.IProgressMonitor)
 202          */
 203         @Override
 204         protected IStatus run(IProgressMonitor monitor) {
 205             view.getConversationHolder().bind();
 206             view.query();
 207             Display.getDefault().asyncExec(new Runnable() {
 208
 209                 @Override
 210                 public void run() {
 211                     CdmStore.getContextManager().notifyContextRefresh();
 212                 }
 213             });
 214             return Status.OK_STATUS;
 215         }
 216
 217     }
 218 }