eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/PrimerGeneralDetailElement.java

   1 /**
   2  * Copyright (C) 2014 EDIT
   3  * European Distributed Institute of Taxonomy
   4  * http://www.e-taxonomy.eu
   5  *
   6  * The contents of this file are subject to the Mozilla Public License Version 1.1
   7  * See LICENSE.TXT at the top of this package for the full license terms.
   8  */
   9 package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
  10
  11 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  12 import eu.etaxonomy.cdm.model.common.TermType;
  13 import eu.etaxonomy.cdm.model.molecular.Primer;
  14 import eu.etaxonomy.cdm.model.molecular.SequenceString;
  15 import eu.etaxonomy.cdm.model.reference.Reference;
  16 import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
  17 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  18 import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
  19 import eu.etaxonomy.taxeditor.ui.element.LayoutConstants;
  20 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  21 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  22 import eu.etaxonomy.taxeditor.ui.section.supplemental.AnnotationSection;
  23 import eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement;
  24
  25 /**
  26  * @author pplitzner
  27  * @date 06.01.2014
  28  *
  29  */
  30 public class PrimerGeneralDetailElement extends AbstractCdmDetailElement<Primer> {
  31
  32
  33     private TextWithLabelElement textPrimerName;
  34     // we are using a basic text field which is backed up by a Sequence object modelwise.
  35     // This is a bit of a overhead as we may just need the sequence string. This may change in future in both directions:
  36     // either extending this view to support the remaining fields of Sequence or by switching to the more basic SequenceString model element
  37     private TextWithLabelElement textPrimerSequence;
  38     private TermComboElement<DefinedTerm> comboMarker;
  39     private EntitySelectionElement<Reference> selectionReference;
  40
  41     /**
  42      * @param formFactory
  43      * @param formElement
  44      */
  45     public PrimerGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  46         super(formFactory, formElement);
  47     }
  48
  49     /*
  50      * (non-Javadoc)
  51      *
  52      * @see
  53      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
  54      * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
  55      */
  56     @Override
  57     protected void createControls(ICdmFormElement formElement, Primer entity, int style) {
  58         textPrimerName = formFactory.createTextWithLabelElement(formElement, "Primer Name", entity.getLabel(), style);
  59         String sequenceString = null;
  60         if(entity.getSequence()!=null){
  61             sequenceString = entity.getSequence().getString();
  62         }
  63         textPrimerSequence = formFactory.createTextWithLabelElement(formElement, "Primer seq. 5'->3'", sequenceString, style);
  64
  65         comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style);
  66
  67         selectionReference = formFactory
  68                 .createSelectionElement(Reference.class,
  69                         getConversationHolder(), formElement, "Reference",
  70                         entity.getPublishedIn(),
  71                         EntitySelectionElement.ALL, style);
  72
  73         AnnotationSection annotationSection = formFactory.createAnnotationSection(getConversationHolder(), formElement, style);
  74         annotationSection.setLayoutData(LayoutConstants.FILL_HORIZONTALLY(2, 1));
  75         annotationSection.setEntity(entity);
  76     }
  77
  78     /*
  79      * (non-Javadoc)
  80      *
  81      * @see
  82      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
  83      * .lang.Object)
  84      */
  85     @Override
  86     public void handleEvent(Object eventSource) {
  87         if(eventSource==textPrimerName){
  88             getEntity().setLabel(textPrimerName.getText());
  89         }
  90         else if(eventSource==comboMarker){
  91             getEntity().setDnaMarker(comboMarker.getSelection());
  92         }
  93         else if(eventSource==textPrimerSequence){
  94             SequenceString sequenceString = getEntity().getSequence();
  95             if(sequenceString==null){
  96                 sequenceString = SequenceString.NewInstance("");
  97                 getEntity().setSequence(sequenceString);
  98             }
  99             sequenceString.setString(textPrimerSequence.getText());
 100         }
 101         else if(eventSource==selectionReference){
 102             getEntity().setPublishedIn(selectionReference.getSelection());
 103         }
 104     }
 105 }