eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/SequenceGeneralDetailElement.java

   1 // $Id$
   2 /**
   3 * Copyright (C) 2013 EDIT
   4 * European Distributed Institute of Taxonomy
   5 * http://www.e-taxonomy.eu
   6 *
   7 * The contents of this file are subject to the Mozilla Public License Version 1.1
   8 * See LICENSE.TXT at the top of this package for the full license terms.
   9 */
  10 package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
  11
  12 import org.eclipse.swt.widgets.Text;
  13
  14 import eu.etaxonomy.cdm.model.common.DefinedTerm;
  15 import eu.etaxonomy.cdm.model.common.TermType;
  16 import eu.etaxonomy.cdm.model.molecular.Sequence;
  17 import eu.etaxonomy.cdm.model.molecular.SequenceString;
  18 import eu.etaxonomy.taxeditor.ui.combo.TermComboElement;
  19 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  20 import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
  21 import eu.etaxonomy.taxeditor.ui.element.NumberWithLabelElement;
  22 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  23 import eu.etaxonomy.taxeditor.ui.element.UriWithLabelElement;
  24 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  25
  26 /**
  27  * @author pplitzner
  28  * @date 19.12.2013
  29  *
  30  */
  31 public class SequenceGeneralDetailElement extends AbstractCdmDetailElement<Sequence> {
  32
  33     private TermComboElement<DefinedTerm> comboMarker;
  34     private TextWithLabelElement textConsensusSequence;
  35     private NumberWithLabelElement textConsensusSequenceLength;
  36     private TextWithLabelElement textBarcodeSequence;
  37     private TextWithLabelElement textGeneticAccessNo;
  38     private TextWithLabelElement textBoldProcessID;
  39     private UriWithLabelElement textBoldUri;
  40
  41     /**
  42      * @param formFactory
  43      * @param formElement
  44      */
  45     public SequenceGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  46         super(formFactory, formElement);
  47     }
  48
  49     /*
  50      * (non-Javadoc)
  51      *
  52      * @see
  53      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
  54      * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
  55      */
  56     @Override
  57     protected void createControls(ICdmFormElement formElement, Sequence entity, int style) {
  58         comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style);
  59         textConsensusSequence = formFactory.createTextWithLabelElement(formElement, "Consensus Sequence 5'->3'", entity.getConsensusSequence().getString(), style);
  60         textConsensusSequenceLength = formFactory.createNumberTextWithLabelElement(formElement, "Consensus Seq. Length", entity.getConsensusSequence().getLength(), style);
  61         ((Text) textConsensusSequenceLength.getMainControl()).setEditable(false);
  62         textBarcodeSequence = formFactory.createTextWithLabelElement(formElement, "Barcode Sequence 5'->3'", entity.getBarcodeSequencePart()==null?"":entity.getBarcodeSequencePart().getString(), style);
  63
  64         textGeneticAccessNo = formFactory.createTextWithLabelElement(formElement, "Genetic Acc. No.", entity.getGeneticAccessionNumber(), style);
  65         textBoldProcessID = formFactory.createTextWithLabelElement(formElement, "BOLD Process ID", entity.getBoldProcessId(), style);
  66         textBoldUri = formFactory.createUriWithLabelElement(formElement, "BOLD URI", entity.getBoldUri(), style);
  67         ((Text) textBoldUri.getMainControl()).setEditable(false);
  68
  69     }
  70
  71     /*
  72      * (non-Javadoc)
  73      *
  74      * @see
  75      * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
  76      * .lang.Object)
  77      */
  78     @Override
  79     public void handleEvent(Object eventSource) {
  80         if(eventSource==comboMarker){
  81             getEntity().setDnaMarker(comboMarker.getSelection());
  82         }
  83         else if(eventSource==textConsensusSequence){
  84             SequenceString consensusSequence = getEntity().getConsensusSequence();
  85             if(consensusSequence==null){
  86                 consensusSequence = SequenceString.NewInstance();
  87             }
  88             consensusSequence.setString(textConsensusSequence.getText());
  89             getEntity().setConsensusSequence(consensusSequence);
  90             textConsensusSequenceLength.setNumber(consensusSequence.getLength());
  91         }
  92         else if(eventSource==textConsensusSequenceLength){
  93             // this is a derived value and should not be edited
  94         }
  95         else if(eventSource==textBarcodeSequence){
  96             SequenceString barcodeSequencePart = getEntity().getBarcodeSequencePart();
  97             if(barcodeSequencePart==null){
  98                 barcodeSequencePart = SequenceString.NewInstance();
  99             }
 100             barcodeSequencePart.setString(textBarcodeSequence.getText());
 101             getEntity().setBarcodeSequencePart(barcodeSequencePart);
 102         }
 103         else if(eventSource==textGeneticAccessNo){
 104             getEntity().setGeneticAccessionNumber(textGeneticAccessNo.getText());
 105         }
 106         else if(eventSource==textBoldProcessID){
 107             getEntity().setBoldProcessId(textBoldProcessID.getText());
 108             if(textBoldProcessID.getText()!=null && !textBoldProcessID.getText().isEmpty()){
 109                 textBoldUri.setUri(getEntity().getBoldUri());
 110             }
 111             else{
 112                 textBoldUri.setText("");
 113             }
 114         }
 115         else if(eventSource==textBoldUri){
 116             //cannot be set because it is generated from the genetic access number and a base URI
 117         }
 118     }
 119
 120 }