3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
;
12 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTerm
;
13 import eu
.etaxonomy
.cdm
.model
.common
.TermType
;
14 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
15 import eu
.etaxonomy
.cdm
.model
.molecular
.SequenceString
;
16 import eu
.etaxonomy
.taxeditor
.ui
.combo
.TermComboElement
;
17 import eu
.etaxonomy
.taxeditor
.ui
.element
.CdmFormFactory
;
18 import eu
.etaxonomy
.taxeditor
.ui
.element
.ICdmFormElement
;
19 import eu
.etaxonomy
.taxeditor
.ui
.element
.NumberWithLabelElement
;
20 import eu
.etaxonomy
.taxeditor
.ui
.element
.TextWithLabelElement
;
21 import eu
.etaxonomy
.taxeditor
.ui
.element
.UriWithLabelElement
;
22 import eu
.etaxonomy
.taxeditor
.ui
.section
.AbstractCdmDetailElement
;
29 public class SequenceGeneralDetailElement
extends AbstractCdmDetailElement
<Sequence
> {
31 private TermComboElement
<DefinedTerm
> comboMarker
;
32 private TextWithLabelElement textConsensusSequence
;
33 private NumberWithLabelElement textConsensusSequenceLength
;
34 private TextWithLabelElement textBarcodeSequence
;
35 private TextWithLabelElement textGeneticAccessNo
;
36 private TextWithLabelElement textBoldProcessID
;
37 private UriWithLabelElement textBoldUri
;
43 public SequenceGeneralDetailElement(CdmFormFactory formFactory
, ICdmFormElement formElement
) {
44 super(formFactory
, formElement
);
51 * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#createControls
52 * (eu.etaxonomy.taxeditor.forms.ICdmFormElement, java.lang.Object, int)
55 protected void createControls(ICdmFormElement formElement
, Sequence entity
, int style
) {
56 comboMarker
= formFactory
.createDefinedTermComboElement(TermType
.DnaMarker
, formElement
, "DNA Marker", entity
.getDnaMarker(), style
);
57 textConsensusSequence
= formFactory
.createTextWithLabelElement(formElement
, "Consensus Sequence 5'->3'", entity
.getConsensusSequence().getString(), style
);
58 textConsensusSequenceLength
= formFactory
.createNumberTextWithLabelElement(formElement
, "Consensus Seq. Length", entity
.getConsensusSequence().getLength(), style
);
59 textConsensusSequenceLength
.setEnabled(false);
60 textBarcodeSequence
= formFactory
.createTextWithLabelElement(formElement
, "Barcode Sequence 5'->3'", entity
.getBarcodeSequencePart()==null?
"":entity
.getBarcodeSequencePart().getString(), style
);
62 textGeneticAccessNo
= formFactory
.createTextWithLabelElement(formElement
, "Genetic Acc. No.", entity
.getGeneticAccessionNumber(), style
);
63 textBoldProcessID
= formFactory
.createTextWithLabelElement(formElement
, "BOLD Process ID", entity
.getBoldProcessId(), style
);
64 textBoldUri
= formFactory
.createUriWithLabelElement(formElement
, "BOLD URI", entity
.getBoldUri(), style
);
65 textBoldUri
.setEnabled(false);
73 * eu.etaxonomy.taxeditor.section.AbstractCdmDetailElement#handleEvent(java
77 public void handleEvent(Object eventSource
) {
78 if(eventSource
==comboMarker
){
79 getEntity().setDnaMarker(comboMarker
.getSelection());
81 else if(eventSource
==textConsensusSequence
){
82 SequenceString consensusSequence
= getEntity().getConsensusSequence();
83 if(consensusSequence
==null){
84 consensusSequence
= SequenceString
.NewInstance();
86 consensusSequence
.setString(textConsensusSequence
.getText());
87 getEntity().setConsensusSequence(consensusSequence
);
88 textConsensusSequenceLength
.setNumber(consensusSequence
.getLength());
90 else if(eventSource
==textConsensusSequenceLength
){
91 // this is a derived value and should not be edited
93 else if(eventSource
==textBarcodeSequence
){
94 SequenceString barcodeSequencePart
= getEntity().getBarcodeSequencePart();
95 if(barcodeSequencePart
==null){
96 barcodeSequencePart
= SequenceString
.NewInstance();
98 barcodeSequencePart
.setString(textBarcodeSequence
.getText());
99 getEntity().setBarcodeSequencePart(barcodeSequencePart
);
101 else if(eventSource
==textGeneticAccessNo
){
102 getEntity().setGeneticAccessionNumber(textGeneticAccessNo
.getText());
104 else if(eventSource
==textBoldProcessID
){
105 getEntity().setBoldProcessId(textBoldProcessID
.getText());
106 if(textBoldProcessID
.getText()!=null && !textBoldProcessID
.getText().isEmpty()){
107 textBoldUri
.setUri(getEntity().getBoldUri());
110 textBoldUri
.setText("");
113 else if(eventSource
==textBoldUri
){
114 //cannot be set because it is generated from the genetic access number and a base URI