4 * Copyright (C) 2011 EDIT
5 * European Distributed Institute of Taxonomy
6 * http://www.e-taxonomy.eu
8 * The contents of this file are subject to the Mozilla Public License Version 1.1
9 * See LICENSE.TXT at the top of this package for the full license terms.
12 package eu
.etaxonomy
.taxeditor
.view
.detail
;
16 import org
.eclipse
.jface
.viewers
.ISelection
;
17 import org
.eclipse
.jface
.viewers
.SelectionChangedEvent
;
18 import org
.eclipse
.jface
.viewers
.TreeNode
;
19 import org
.eclipse
.swt
.SWT
;
20 import org
.eclipse
.swt
.widgets
.Composite
;
21 import org
.eclipse
.ui
.forms
.widgets
.ExpandableComposite
;
23 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacade
;
24 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacadeNotSupportedException
;
25 import eu
.etaxonomy
.cdm
.ext
.occurrence
.gbif
.GbifResponse
;
26 import eu
.etaxonomy
.cdm
.model
.agent
.Person
;
27 import eu
.etaxonomy
.cdm
.model
.agent
.Team
;
28 import eu
.etaxonomy
.cdm
.model
.agent
.TeamOrPersonBase
;
29 import eu
.etaxonomy
.cdm
.model
.common
.DefinedTermBase
;
30 import eu
.etaxonomy
.cdm
.model
.common
.Group
;
31 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
32 import eu
.etaxonomy
.cdm
.model
.common
.TermVocabulary
;
33 import eu
.etaxonomy
.cdm
.model
.common
.User
;
34 import eu
.etaxonomy
.cdm
.model
.description
.CategoricalData
;
35 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionBase
;
36 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementBase
;
37 import eu
.etaxonomy
.cdm
.model
.description
.PolytomousKeyNode
;
38 import eu
.etaxonomy
.cdm
.model
.description
.SpecimenDescription
;
39 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
40 import eu
.etaxonomy
.cdm
.model
.molecular
.DnaSample
;
41 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
42 import eu
.etaxonomy
.cdm
.model
.molecular
.SingleRead
;
43 import eu
.etaxonomy
.cdm
.model
.name
.NonViralName
;
44 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivedUnit
;
45 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
46 import eu
.etaxonomy
.cdm
.model
.occurrence
.MediaSpecimen
;
47 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationType
;
48 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
49 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
50 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationship
;
51 import eu
.etaxonomy
.taxeditor
.model
.AbstractUtility
;
52 import eu
.etaxonomy
.taxeditor
.model
.FeatureNodeContainer
;
53 import eu
.etaxonomy
.taxeditor
.model
.IDerivedUnitFacadePart
;
54 import eu
.etaxonomy
.taxeditor
.model
.MessagingUtils
;
55 import eu
.etaxonomy
.taxeditor
.model
.PolytomousKeyRelationship
;
56 import eu
.etaxonomy
.taxeditor
.preference
.IPreferenceKeys
;
57 import eu
.etaxonomy
.taxeditor
.preference
.PreferencesUtil
;
58 import eu
.etaxonomy
.taxeditor
.store
.UsageTermCollection
;
59 import eu
.etaxonomy
.taxeditor
.ui
.element
.AbstractFormSection
;
60 import eu
.etaxonomy
.taxeditor
.ui
.element
.RootElement
;
61 import eu
.etaxonomy
.taxeditor
.ui
.section
.agent
.PersonDetailSection
;
62 import eu
.etaxonomy
.taxeditor
.ui
.section
.agent
.TeamDetailSection
;
63 import eu
.etaxonomy
.taxeditor
.ui
.section
.agent
.TeamOrPersonBaseDetailSection
;
64 import eu
.etaxonomy
.taxeditor
.ui
.section
.common
.ReferencedEntityDetailSection
;
65 import eu
.etaxonomy
.taxeditor
.ui
.section
.description
.DescribedSpecimenSection
;
66 import eu
.etaxonomy
.taxeditor
.ui
.section
.description
.DescriptionDetailSection
;
67 import eu
.etaxonomy
.taxeditor
.ui
.section
.description
.DescriptionElementDetailSection
;
68 import eu
.etaxonomy
.taxeditor
.ui
.section
.description
.DescriptionElementMediaSection
;
69 import eu
.etaxonomy
.taxeditor
.ui
.section
.description
.DescriptionElementSourceSection
;
70 import eu
.etaxonomy
.taxeditor
.ui
.section
.description
.DescriptionSourceSection
;
71 import eu
.etaxonomy
.taxeditor
.ui
.section
.description
.MediaDetailsSection
;
72 import eu
.etaxonomy
.taxeditor
.ui
.section
.description
.NaturalLanguageSection
;
73 import eu
.etaxonomy
.taxeditor
.ui
.section
.description
.ScopeSection
;
74 import eu
.etaxonomy
.taxeditor
.ui
.section
.feature
.FeatureDistributionDetailSection
;
75 import eu
.etaxonomy
.taxeditor
.ui
.section
.grantedAuthority
.GrantedAuthorityDetailSection
;
76 import eu
.etaxonomy
.taxeditor
.ui
.section
.group
.GroupDetailSection
;
77 import eu
.etaxonomy
.taxeditor
.ui
.section
.group
.MemberDetailSection
;
78 import eu
.etaxonomy
.taxeditor
.ui
.section
.identifier
.IdentifierDetailSection
;
79 import eu
.etaxonomy
.taxeditor
.ui
.section
.key
.PolytomousKeyDetailSection
;
80 import eu
.etaxonomy
.taxeditor
.ui
.section
.key
.PolytomousKeyNodeDetailSection
;
81 import eu
.etaxonomy
.taxeditor
.ui
.section
.name
.NameRelationshipDetailSection
;
82 import eu
.etaxonomy
.taxeditor
.ui
.section
.name
.NomenclaturalStatusSection
;
83 import eu
.etaxonomy
.taxeditor
.ui
.section
.name
.NonViralNameDetailSection
;
84 import eu
.etaxonomy
.taxeditor
.ui
.section
.name
.ProtologueSection
;
85 import eu
.etaxonomy
.taxeditor
.ui
.section
.name
.TypeDesignationSection
;
86 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.DerivedUnitBaseDetailSection
;
87 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.DerivedUnitGeneralDetailSection
;
88 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.DeterminationDetailSection
;
89 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.EmptySection
;
90 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.FieldUnitDetailSection
;
91 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.FieldUnitGeneralDetailSection
;
92 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.GatheringEventDetailSection
;
93 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.association
.DerivedUnitTypeDesignationSection
;
94 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.association
.TaxonAssociationDetailSection
;
95 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.DnaQualityDetailSection
;
96 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.DnaSampleGeneralDetailSection
;
97 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.DnaSamplePreparationPreservationSection
;
98 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.SampleDesignationDetailSection
;
99 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.SequenceContigFileCollectionDetailSection
;
100 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.SequenceGeneralDetailSection
;
101 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.SequenceReferenceCollectionDetailSection
;
102 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.SingleReadGeneralDetailSection
;
103 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.SingleReadPherogramCollectionDetailSection
;
104 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.dna
.TissueSampleGeneralDetailSection
;
105 import eu
.etaxonomy
.taxeditor
.ui
.section
.occurrence
.media
.MediaSpecimenGeneralDetailSection
;
106 import eu
.etaxonomy
.taxeditor
.ui
.section
.reference
.NomenclaturalReferenceDetailSection
;
107 import eu
.etaxonomy
.taxeditor
.ui
.section
.reference
.ReferenceDetailSection
;
108 import eu
.etaxonomy
.taxeditor
.ui
.section
.supplemental
.RightsSection
;
109 import eu
.etaxonomy
.taxeditor
.ui
.section
.taxon
.ParsingMessagesSection
;
110 import eu
.etaxonomy
.taxeditor
.ui
.section
.taxon
.TaxonBaseDetailSection
;
111 import eu
.etaxonomy
.taxeditor
.ui
.section
.taxon
.TaxonRelationshipDetailSection
;
112 import eu
.etaxonomy
.taxeditor
.ui
.section
.user
.GroupsByUserDetailSection
;
113 import eu
.etaxonomy
.taxeditor
.ui
.section
.user
.UserDetailSection
;
114 import eu
.etaxonomy
.taxeditor
.ui
.section
.userecords
.UseRecordDetailSection
;
115 import eu
.etaxonomy
.taxeditor
.ui
.section
.vocabulary
.TermVocabularyDetailSection
;
116 import eu
.etaxonomy
.taxeditor
.view
.AbstractCdmDataViewer
;
117 import eu
.etaxonomy
.taxeditor
.view
.AbstractCdmViewPart
;
121 * The DetailsViewer handles the content of the details view (
122 * {@link DetailsViewPart}).<br>
123 * Depending on the type of the selected element the section of the details view
127 * @created Feb 12, 2010
130 public class DetailsViewer
extends AbstractCdmDataViewer
{
132 private ISelection selection
;
134 public DetailsViewer(Composite parent
, AbstractCdmViewPart viewPart
) {
135 super(parent
, viewPart
);
138 // START HACK TO MAKE THE DERIVED UNIT FACADE WORK
139 // since we are getting implementations of DerivedUnitBase from the bulk
141 // and not derived unit facade objects,
144 public void setInput(Object input
) {
145 if(input
instanceof TreeNode
){
146 input
= ((TreeNode
) input
).getValue();
148 if(input
instanceof GbifResponse
){
149 input
= ((GbifResponse
) input
).getDerivedUnitFacade();
151 if (input
.getClass().equals(DerivedUnit
.class)) {
152 DerivedUnit derivedUnit
= (DerivedUnit
)input
;
154 input
= DerivedUnitFacade
.NewInstance(derivedUnit
,
155 PreferencesUtil
.getDerivedUnitConfigurator());
156 } catch (DerivedUnitFacadeNotSupportedException e
) {
157 // MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
160 else if(input
instanceof FieldUnit
){
161 input
= DerivedUnitFacade
.NewInstance(SpecimenOrObservationType
.FieldUnit
, (FieldUnit
) input
);
163 super.setInput(input
);
167 protected void markViewPartDirty() {
168 if (getInput() instanceof DerivedUnitFacade
) {
169 DerivedUnitFacade facade
= (DerivedUnitFacade
) getInput();
170 if(facade
.innerDerivedUnit()!=null){
171 getViewPart().changed(facade
.innerDerivedUnit());
173 else if(facade
.innerFieldUnit()!=null){
174 getViewPart().changed(facade
.innerFieldUnit());
178 super.markViewPartDirty();
182 // END HACK TO MAKE THE DERIVED UNIT FACADE WORK
187 protected void showParts() {
188 // FIXME (CM) : Need to clean out this code.
189 // Too much type checking to decide which detail view to display.
190 // Need to build in a mechanism where navigators / editors are 'aware'
191 // of the corresponding detail viewer.
192 Object input
= getInput();
195 if (input
instanceof TaxonBase
) {
196 if(((TaxonBase
) input
).getName()==null){
197 createEmptySection(rootElement
);
200 createTaxonSections(rootElement
);
203 } else if (input
instanceof NonViralName
) {
204 createNameSections(rootElement
);
206 } else if (input
instanceof Reference
) {
207 createReferenceSections(rootElement
);
209 } else if (input
instanceof Team
) {
210 createTeamDetailSection(rootElement
);
212 } else if (input
instanceof Person
) {
213 createPersonDetailSection(rootElement
);
215 } else if (input
instanceof TeamOrPersonBase
) {
216 createTeamOrPersonBaseDetailSection(rootElement
);
218 } else if (input
instanceof DescriptionBase
) {
219 if(input
instanceof SpecimenDescription
){
220 //TODO: add more sections to DetailsView for SpecimenDescription
221 createSpecimenDescriptionSection(rootElement
);
224 Set
<Marker
> descriptionMarkers
= ((DescriptionBase
<?
>) input
).getMarkers();
226 Boolean isUseDescription
= false;
227 for (Marker marker
: descriptionMarkers
) {
228 if (marker
.getMarkerType()!= null && marker
.getMarkerType().getUuid().equals(UsageTermCollection
.uuidUseMarkerType
)) {
229 isUseDescription
= true;
232 if (((DescriptionBase
<?
>) input
).isImageGallery()) {
233 createImageGallerySection(rootElement
);
235 } else if (isUseDescription
) {
236 createUseDescriptionSection(rootElement
);
238 createDescriptionSection(rootElement
);
242 } else if (input
instanceof DescriptionElementBase
) {
243 Set
<Marker
> descriptionMarkers
= ((DescriptionElementBase
) input
).getInDescription().getMarkers();
245 Boolean isUseDescription
= false;
246 for (Marker marker
: descriptionMarkers
) {
247 if (marker
.getMarkerType()!= null && marker
.getMarkerType().getUuid().equals(UsageTermCollection
.uuidUseMarkerType
)) {
248 isUseDescription
= true;
252 if (isUseDescription
== true && input
instanceof CategoricalData
) {
253 createUseRecordSection(rootElement
);
255 createDescriptionElementSection(rootElement
);
258 } else if (input
instanceof Media
) {
259 createMediaElementSection(rootElement
);
261 } else if (input
instanceof DerivedUnitFacade
) {
262 if(((DerivedUnitFacade
) input
).getType()==SpecimenOrObservationType
.FieldUnit
){
263 if(((DerivedUnitFacade
) input
).innerFieldUnit()==null){
264 MessagingUtils
.error(DetailsViewer
.class, "FieldUnit of facade is null", null);
267 createFieldUnitSection(rootElement
);
270 else if(((DerivedUnitFacade
) input
).getType()==SpecimenOrObservationType
.PreservedSpecimen
){
271 if(((DerivedUnitFacade
) input
).innerDerivedUnit()==null){
272 MessagingUtils
.error(DetailsViewer
.class, "DerivedUnit of facade is null", null);
275 createDerivedUnitBaseElementSection(rootElement
);
278 else if(((DerivedUnitFacade
) input
).getType()==SpecimenOrObservationType
.TissueSample
){
279 //TissueSample should only be created by using it's own class
280 //in future using only one class with different SpecimenOrObservationTypes is desired
281 // createTissueSampleSection(rootElement);
284 createDerivedUnitBaseElementSection(rootElement
);
286 } else if (input
instanceof DnaSample
){
287 DnaSample dnaSample
= (DnaSample
)input
;
288 if(dnaSample
.getRecordBasis()==SpecimenOrObservationType
.TissueSample
){
289 createTissueSampleSection(rootElement
);
291 else if(dnaSample
.getRecordBasis()==SpecimenOrObservationType
.DnaSample
){
292 createDnaSampleSection(rootElement
);
294 } else if (input
instanceof MediaSpecimen
){
295 createMediaSpecimenSection(rootElement
);
297 else if(input
instanceof Sequence
){
298 createSequenceSection(rootElement
);
300 else if(input
instanceof SingleRead
){
301 createSingleReadSection(rootElement
);
303 else if (input
instanceof FeatureNodeContainer
) {
304 createFeatureDistributionSection(rootElement
);
306 }else if ((input
instanceof PolytomousKeyNode
) || (input
instanceof PolytomousKeyRelationship
)) {
307 createPolytomousKeyNodeSection(rootElement
);
308 } else if (input
instanceof User
) {
309 createUserSection(rootElement
);
310 } else if (input
instanceof Group
) {
311 createGroupSection(rootElement
);
312 } else if (input
instanceof TaxonRelationship
) {
313 createTaxonRelationshipSection(rootElement
);
314 } else if (input
instanceof TermVocabulary
) {
315 createTermVocabularySection(rootElement
);
316 } else if (input
instanceof DefinedTermBase
) {
317 createDefinedTermSection(rootElement
);
320 createEmptySection(rootElement
);
326 private void createEmptySection(RootElement parent
) {
329 EmptySection emptySection
= formFactory
.createEmptySection(formFactory
, parent
, SWT
.NONE
);
331 addPart(emptySection
);
334 private void createGroupSection(RootElement parent
) {
337 GroupDetailSection groupDetailSection
= formFactory
.createGroupDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
338 MemberDetailSection memberDetailSection
= formFactory
.createMemberDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
339 GrantedAuthorityDetailSection grantedAuthorityDetailSection
= formFactory
.createGrantedAuthorityDetailSection(getConversationHolder(), parent
,ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
341 addPart(groupDetailSection
);
342 addPart(memberDetailSection
);
343 addPart(grantedAuthorityDetailSection
);
348 public ISelection
getSelection() {
354 public void setSelection(ISelection selection
, boolean reveal
) {
355 this.selection
= selection
;
356 if(this.selection
!=null){
357 SelectionChangedEvent selectionChangedEvent
= new SelectionChangedEvent(this, selection
);
358 fireSelectionChanged(selectionChangedEvent
);
362 private void createTaxonSections(RootElement parent
) {
365 ParsingMessagesSection parsingMessagesSection
= formFactory
.createParsingMessagesSection(getConversationHolder(), parent
, this,
366 ExpandableComposite
.EXPANDED
| ExpandableComposite
.EXPANDED
);
368 TaxonBaseDetailSection taxonBaseDetailSection
= formFactory
.createTaxonBaseDetailSection(getConversationHolder(), parent
, this,
369 ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
370 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
372 NonViralNameDetailSection nonViralNameSection
= formFactory
.createNonViralNameDetailSection(getConversationHolder(), parent
, this,
373 ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
374 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
376 NomenclaturalReferenceDetailSection referenceDetailSection
= formFactory
.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent
, this,
377 ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
378 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
380 NomenclaturalStatusSection nomenclaturalStatusSection
= formFactory
.createNomenclaturalStatusSection(getConversationHolder(), parent
,
381 ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
382 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
385 if(!PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.IS_RL
)){
386 ProtologueSection protologSection
= formFactory
.createProtologueSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
387 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
389 TypeDesignationSection typeDesignationSection
= formFactory
.createTypeDesignationSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
390 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
392 NameRelationshipDetailSection nameRelationshipSection
= formFactory
.createNameRelationshipDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
393 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
395 addPart(protologSection
);
396 addPart(typeDesignationSection
);
397 addPart(nameRelationshipSection
);
400 addPart(parsingMessagesSection
);
401 addPart(taxonBaseDetailSection
);
402 addPart(nonViralNameSection
);
403 addPart(nomenclaturalStatusSection
);
404 addPart(referenceDetailSection
);
407 private void createNameSections(RootElement parent
) {
409 NonViralNameDetailSection nonViralNameSection
= formFactory
.createNonViralNameDetailSection(getConversationHolder(), parent
, this,
410 ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
411 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
413 NomenclaturalReferenceDetailSection referenceDetailSection
= formFactory
.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent
, this,
414 ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
415 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
417 NomenclaturalStatusSection nomenclaturalStatusSection
= formFactory
.createNomenclaturalStatusSection(getConversationHolder(), parent
,
418 ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
419 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
421 addPart(nonViralNameSection
);
422 addPart(nomenclaturalStatusSection
);
423 addPart(referenceDetailSection
);
425 if(!PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.IS_RL
)){
426 ProtologueSection protologSection
= formFactory
.createProtologueSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
427 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
429 TypeDesignationSection typeDesignationSection
= formFactory
.createTypeDesignationSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
430 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
432 NameRelationshipDetailSection nameRelationshipSection
= formFactory
.createNameRelationshipDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
433 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
434 addPart(protologSection
);
435 addPart(typeDesignationSection
);
436 addPart(nameRelationshipSection
);
440 private void createReferenceSections(RootElement parent
) {
443 ReferenceDetailSection referenceDetailSection
= formFactory
.createReferenceDetailSection(getConversationHolder(), parent
, this,
444 ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
446 addPart(referenceDetailSection
);
449 private void createTeamOrPersonBaseDetailSection(RootElement parent
) {
451 TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection
= formFactory
.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
453 addPart(teamOrPersonBaseDetailSection
);
456 private void createTeamDetailSection(RootElement parent
) {
458 TeamDetailSection teamDetailSection
= formFactory
.createTeamDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
460 addPart(teamDetailSection
);
463 private void createPersonDetailSection(RootElement parent
) {
465 PersonDetailSection personDetailSection
= formFactory
.createPersonDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
466 addPart(personDetailSection
);
469 private void createDescriptionElementSection(RootElement parent
) {
472 DescriptionElementDetailSection descriptionElementDetailSection
= formFactory
.createDescriptionElementDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
474 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
476 DescriptionElementSourceSection descriptionElementSourceSection
= formFactory
.createDescriptionElementSourceSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
478 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
480 DescriptionElementMediaSection descriptionElementMediaSection
= formFactory
.createDescriptionElementMediaSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
482 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
484 addPart(descriptionElementDetailSection
);
485 addPart(descriptionElementSourceSection
);
486 addPart(descriptionElementMediaSection
);
489 private void createDescriptionSection(RootElement parent
) {
491 DescriptionDetailSection descriptionDetailSection
= formFactory
.createDescriptionDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
493 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
495 NaturalLanguageSection naturalLanguageSection
= formFactory
.createNaturalLanguageSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
497 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
499 DescribedSpecimenSection describedSpecimenSection
= formFactory
.createDescribedSpecimenSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
501 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
503 // DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
504 // .createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
505 // getConversationHolder(), parent, Section.TWISTIE);
507 // formFactory.createHorizontalSeparator(parent, SWT.BORDER);
509 ScopeSection scopeSection
= formFactory
.createScopeSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
511 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
513 addPart(descriptionDetailSection
);
514 addPart(naturalLanguageSection
);
515 addPart(describedSpecimenSection
);
516 // addPart(descriptionSourceSection);
517 addPart(scopeSection
);
520 private void createSpecimenDescriptionSection(RootElement parent
) {
522 DescriptionDetailSection descriptionDetailSection
= formFactory
.createDescriptionDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
523 addPart(descriptionDetailSection
);
526 private void createUseDescriptionSection(RootElement parent
) {
528 DescriptionDetailSection descriptionDetailSection
= formFactory
.createDescriptionDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
530 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
532 DescriptionSourceSection descriptionSourceSection
= formFactory
.createDescriptionSourceSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
534 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
536 addPart(descriptionDetailSection
);
537 addPart(descriptionSourceSection
);
541 private void createImageGallerySection(RootElement parent
) {
543 DescriptionDetailSection descriptionDetailSection
= formFactory
.createDescriptionDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
545 addPart(descriptionDetailSection
);
548 private void createMediaElementSection(RootElement parent
) {
551 MediaDetailsSection mediaDetailSection
= formFactory
.createMediaDetailsSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
553 addPart(mediaDetailSection
);
556 private void createDerivedUnitBaseElementSection(RootElement parent
) {
559 DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection
= formFactory
.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
560 //TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
561 if(!(AbstractUtility
.getActivePart() instanceof IDerivedUnitFacadePart
)){
562 derivedUnitGeneralDetailSection
.setShowOnlyDerivedUnitData(true);
564 addPart(derivedUnitGeneralDetailSection
);
566 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
568 DerivedUnitBaseDetailSection derivedUnitBaseDetailSection
= formFactory
.createDerivedUnitBaseDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
569 addPart(derivedUnitBaseDetailSection
);
571 //for editors working with facades
572 if(AbstractUtility
.getActivePart() instanceof IDerivedUnitFacadePart
){
573 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
574 GatheringEventDetailSection gatheringEventDetailSection
= formFactory
.createGatheringEventDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
);
575 addPart(gatheringEventDetailSection
);
577 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
578 FieldUnitDetailSection fieldUnitDetailSection
= formFactory
.createFieldUnitDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
);
579 addPart(fieldUnitDetailSection
);
583 if(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.SHOW_TAXON_ASSOCIATIONS
)){
584 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
585 TaxonAssociationDetailSection taxonAssociationDetailSection
= formFactory
.createTaxonAssociationDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
586 addPart(taxonAssociationDetailSection
);
588 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
589 IdentifierDetailSection identifierDetailSection
= formFactory
.createIdentifierDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
590 addPart(identifierDetailSection
);
592 if(!PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.DETERMINATION_ONLY_FOR_FIELD_UNITS
)){
593 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
594 DeterminationDetailSection determinationDetailSection
= formFactory
.createDeterminationDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
);
595 addPart(determinationDetailSection
);
598 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
599 DerivedUnitTypeDesignationSection derivedUnitTypeDesignationSection
= formFactory
.createDerivedUnitTypeDesignationSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
600 addPart(derivedUnitTypeDesignationSection
);
604 private void createFieldUnitSection(RootElement parent
) {
607 FieldUnitGeneralDetailSection fielUnitGeneralDetailSection
= formFactory
.createFieldUnitGeneralDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
609 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
611 GatheringEventDetailSection gatheringEventDetailSection
= formFactory
.createGatheringEventDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
);
613 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
615 FieldUnitDetailSection fieldUnitDetailSection
= formFactory
.createFieldUnitDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
);
617 addPart(fielUnitGeneralDetailSection
);
618 addPart(gatheringEventDetailSection
);
619 addPart(fieldUnitDetailSection
);
621 if(PreferencesUtil
.getPreferenceStore().getBoolean(IPreferenceKeys
.DETERMINATION_ONLY_FOR_FIELD_UNITS
)){
622 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
623 DeterminationDetailSection determinationDetailSection
= formFactory
.createDeterminationDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
);
624 addPart(determinationDetailSection
);
628 private void createTissueSampleSection(RootElement parent
) {
631 TissueSampleGeneralDetailSection section
= formFactory
.createTissueSampleGeneralDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
633 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
635 SampleDesignationDetailSection sampleDesignationDetailSection
= formFactory
.createSampleDesignationDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
638 addPart(sampleDesignationDetailSection
);
641 private void createDnaSampleSection(RootElement parent
) {
644 DnaSampleGeneralDetailSection section
= formFactory
.createDnaSampleGeneralDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
646 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
648 DnaSamplePreparationPreservationSection preparationPreservationSection
= formFactory
.createDnaSamplePreparationPreservationSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
650 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
652 DnaQualityDetailSection qualitySection
= formFactory
.createDnaQualityDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
654 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
656 SampleDesignationDetailSection sampleDesignationDetailSection
= formFactory
.createSampleDesignationDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
659 addPart(preparationPreservationSection
);
660 addPart(qualitySection
);
661 addPart(sampleDesignationDetailSection
);
664 private void createSequenceSection(RootElement parent
) {
667 SequenceGeneralDetailSection section
= formFactory
.createSequenceGeneralDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
669 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
671 SequenceReferenceCollectionDetailSection referenceSection
= formFactory
.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
673 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
675 SequenceContigFileCollectionDetailSection contigFileSection
= formFactory
.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
679 addPart(referenceSection
);
680 addPart(contigFileSection
);
683 private void createSingleReadSection(RootElement parent
) {
686 SingleReadGeneralDetailSection section
= formFactory
.createSingleReadGeneralDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
689 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
691 SingleReadPherogramCollectionDetailSection pherogramSection
= formFactory
.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
692 addPart(pherogramSection
);
696 private void createMediaSpecimenSection(RootElement parent
) {
699 MediaSpecimenGeneralDetailSection generalSection
= formFactory
.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
700 addPart(generalSection
);
702 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
704 RightsSection rightsSection
= formFactory
.createRightsSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
);
705 addPart(rightsSection
);
709 private void createFeatureDistributionSection(RootElement parent
) {
712 FeatureDistributionDetailSection featureDistributionSection
= formFactory
.createFeatureDistributionDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
714 addPart(featureDistributionSection
);
717 private void createPolytomousKeyNodeSection(RootElement parent
) {
720 PolytomousKeyDetailSection polytomousKeyDetailSection
= formFactory
.createPolytomousKeyDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
);
722 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
724 PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection
= formFactory
.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
726 addPart(polytomousKeyDetailSection
);
727 addPart(polytomousKeyNodeDetailSection
);
731 private void createUseRecordSection(RootElement parent
) {
734 UseRecordDetailSection descriptionUseRecordSection
= formFactory
.createUseRecordDetailSection(getConversationHolder(), parent
, this,ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
736 formFactory
.createHorizontalSeparator(parent
, SWT
.BORDER
);
738 addPart(descriptionUseRecordSection
);
743 private void createUserSection(RootElement parent
) {
746 UserDetailSection userDetailSection
= formFactory
.createUserDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
748 GroupsByUserDetailSection groupByUserDetailSection
= formFactory
.createGroupsByUserDetailSection(getConversationHolder(), parent
, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
750 addPart(userDetailSection
);
751 addPart(groupByUserDetailSection
);
754 private void createTaxonRelationshipSection(RootElement parent
) {
757 TaxonRelationshipDetailSection taxonRelationshipDetailSection
= formFactory
.createTaxonRelationshipDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
759 ReferencedEntityDetailSection referencedEntityBaseDetailSection
= formFactory
.createReferencedEntityDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
760 addPart(taxonRelationshipDetailSection
);
761 addPart(referencedEntityBaseDetailSection
);
764 private void createTermVocabularySection(RootElement parent
) {
767 TermVocabularyDetailSection termVocabularyDetailSection
= formFactory
.createTermVocabularyDetailSection(getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
768 addPart(termVocabularyDetailSection
);
771 private void createDefinedTermSection(RootElement parent
) {
774 AbstractFormSection
<?
> definedTermDetailSection
= formFactory
.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent
, this, ExpandableComposite
.TWISTIE
| ExpandableComposite
.EXPANDED
);
775 addPart(definedTermDetailSection
);