cdmlib.git
5 years agoref #6794 add termType to FeatureTree and FeatureNode
Andreas Müller [Tue, 22 Jan 2019 16:29:55 +0000 (17:29 +0100)]
ref #6794 add termType to FeatureTree and FeatureNode

5 years agoref #6794 remove setRoot from FeatureTree
Andreas Müller [Tue, 22 Jan 2019 15:44:59 +0000 (16:44 +0100)]
ref #6794  remove setRoot from FeatureTree

5 years agocleanup
Andreas Müller [Tue, 22 Jan 2019 15:39:06 +0000 (16:39 +0100)]
cleanup

5 years agofix #7372 make allowDuplicates configurable in FeatureTree
Andreas Müller [Tue, 22 Jan 2019 12:44:27 +0000 (13:44 +0100)]
fix #7372 make allowDuplicates configurable in FeatureTree

5 years agoref #7859 removed test for CdmPreference.value size
Andreas Müller [Tue, 22 Jan 2019 12:41:49 +0000 (13:41 +0100)]
ref #7859 removed test for CdmPreference.value size

5 years agoref #8004 add sortIndex to JAXB annotation
Andreas Müller [Tue, 22 Jan 2019 12:40:25 +0000 (13:40 +0100)]
ref #8004 add sortIndex to JAXB annotation

5 years agoref #8006 update labels for MAN, ppSynonyms, inval. desig. & tax. included
Andreas Müller [Tue, 22 Jan 2019 12:21:47 +0000 (13:21 +0100)]
ref #8006 update labels for MAN, ppSynonyms, inval. desig. & tax. included

5 years agofix #7514 update symbols for MAN and ppSynonyms
Andreas Müller [Tue, 22 Jan 2019 11:54:40 +0000 (12:54 +0100)]
fix #7514 update symbols for MAN and ppSynonyms

5 years agofix #7683 fix ExternalLink_AUD.uuid allows null and fix TableCreator for future
Andreas Müller [Mon, 21 Jan 2019 22:31:55 +0000 (23:31 +0100)]
fix #7683 fix ExternalLink_AUD.uuid allows null and fix TableCreator for future

5 years agofix #7857 update name relationship type respresentations and symmetrie
Andreas Müller [Mon, 21 Jan 2019 11:33:59 +0000 (12:33 +0100)]
fix #7857 update name relationship type respresentations and symmetrie

5 years agofix #7859
Andreas Müller [Mon, 21 Jan 2019 10:48:21 +0000 (11:48 +0100)]
fix #7859

5 years agocleanup
Andreas Müller [Mon, 21 Jan 2019 10:47:28 +0000 (11:47 +0100)]
cleanup

5 years agofix #7682 set Point.precision to null where 0
Andreas Müller [Fri, 18 Jan 2019 23:49:43 +0000 (00:49 +0100)]
fix #7682 set Point.precision to null where 0

5 years agofix 8004 add sortindex to DescriptionElementBase
Andreas Müller [Fri, 18 Jan 2019 23:26:52 +0000 (00:26 +0100)]
fix 8004 add sortindex to DescriptionElementBase

5 years agoadd framework for schema update to 5.5
Andreas Müller [Fri, 18 Jan 2019 23:12:22 +0000 (00:12 +0100)]
add framework for schema update to 5.5

5 years agoref #8118 update mysql driver package string
Andreas Müller [Mon, 25 Feb 2019 19:46:06 +0000 (20:46 +0100)]
ref #8118 update mysql driver package string

5 years agofix #7896 fix NPE in RelationshipTermBase.getInverseRepresentation
Andreas Müller [Fri, 22 Feb 2019 23:42:10 +0000 (00:42 +0100)]
fix #7896 fix NPE in RelationshipTermBase.getInverseRepresentation

5 years agoCleanup
Andreas Müller [Fri, 22 Feb 2019 23:30:50 +0000 (00:30 +0100)]
Cleanup

5 years agoref #7106 logging if the worse case is actually happening
Andreas Kohlbecker [Fri, 22 Feb 2019 16:05:09 +0000 (17:05 +0100)]
ref #7106 logging if the worse case is actually happening

5 years agominor
Andreas Müller [Fri, 22 Feb 2019 12:09:00 +0000 (13:09 +0100)]
minor

5 years agoref #8118 fix DatabaseTypeEnumTest
Andreas Müller [Thu, 21 Feb 2019 16:12:55 +0000 (17:12 +0100)]
ref #8118 fix DatabaseTypeEnumTest

5 years agoref #8115: first steps to solve problems with moving description elements
Katja Luther [Thu, 21 Feb 2019 12:14:35 +0000 (13:14 +0100)]
ref #8115: first steps to solve problems with moving description elements

5 years agoref #8118 added MariaDbDatabaseType
Andreas Müller [Thu, 21 Feb 2019 14:08:31 +0000 (15:08 +0100)]
ref #8118 added MariaDbDatabaseType

5 years agoref #8118 fix compile error in SequenceTableCreator
Andreas Müller [Thu, 21 Feb 2019 13:23:06 +0000 (14:23 +0100)]
ref #8118 fix compile error in SequenceTableCreator

5 years agoref #8118 drivers for MySQL updated and MariaDB added
Andreas Müller [Thu, 21 Feb 2019 13:04:02 +0000 (14:04 +0100)]
ref #8118 drivers for MySQL updated and MariaDB added

5 years agoref #8088: fix save taxonnode method
Katja Luther [Wed, 20 Feb 2019 14:33:17 +0000 (15:33 +0100)]
ref #8088: fix save taxonnode method

5 years agoref #8088: save newly created taxonnode with existing taxon
Katja Luther [Wed, 20 Feb 2019 10:33:21 +0000 (11:33 +0100)]
ref #8088: save newly created taxonnode with existing taxon

5 years agoref #8088: save newly created taxonnode with existing taxon
Katja Luther [Wed, 20 Feb 2019 09:10:53 +0000 (10:10 +0100)]
ref #8088: save newly created taxonnode with existing taxon

5 years agofix CacheUpdater
Andreas Müller [Tue, 19 Feb 2019 16:57:20 +0000 (17:57 +0100)]
fix CacheUpdater

5 years agoimplement merge for ImportResult
Andreas Müller [Tue, 19 Feb 2019 16:56:55 +0000 (17:56 +0100)]
implement merge for ImportResult

5 years agocleanup
Andreas Müller [Tue, 19 Feb 2019 16:56:28 +0000 (17:56 +0100)]
cleanup

5 years agofix #8104 renaming familiyNamePart back to lastNamePart
Andreas Kohlbecker [Tue, 19 Feb 2019 10:29:47 +0000 (11:29 +0100)]
fix #8104 renaming familiyNamePart back to lastNamePart

5 years agofix save taxonnode
Katja Luther [Mon, 18 Feb 2019 21:26:11 +0000 (22:26 +0100)]
fix save taxonnode

5 years agofix lazyLoading exception when creating new taxonnode
Katja Luther [Mon, 18 Feb 2019 15:09:34 +0000 (16:09 +0100)]
fix lazyLoading exception when creating new taxonnode

5 years agoUpdating develop poms back to pre merge state
jenkins [Thu, 14 Feb 2019 09:26:43 +0000 (10:26 +0100)]
Updating develop poms back to pre merge state

5 years agoMerge branch 'master' into develop
jenkins [Thu, 14 Feb 2019 09:26:42 +0000 (10:26 +0100)]
Merge branch 'master' into develop

5 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 14 Feb 2019 09:26:41 +0000 (10:26 +0100)]
updating develop poms to master versions to avoid merge conflicts

5 years agoMerge branch 'release/5.5.0' 5.5.0
jenkins [Thu, 14 Feb 2019 09:26:37 +0000 (10:26 +0100)]
Merge branch 'release/5.5.0'

5 years agoupdating poms for branch'release/5.5.0' with non-snapshot versions
jenkins [Thu, 14 Feb 2019 09:10:28 +0000 (10:10 +0100)]
updating poms for branch'release/5.5.0' with non-snapshot versions

5 years agoupdating poms for 5.6.0-SNAPSHOT development
jenkins [Thu, 14 Feb 2019 08:39:11 +0000 (09:39 +0100)]
updating poms for 5.6.0-SNAPSHOT development

5 years agoref #8030 rename updateTitleCacheImpl to updateCachesImpl origin/release/5.5.0
Andreas Müller [Wed, 13 Feb 2019 15:17:29 +0000 (16:17 +0100)]
ref #8030 rename updateTitleCacheImpl to updateCachesImpl

5 years agoref #8030 rename updateTitleCache to updateCaches
Andreas Müller [Wed, 13 Feb 2019 15:12:29 +0000 (16:12 +0100)]
ref #8030 rename updateTitleCache to updateCaches

5 years agoref #8030 further tests
Andreas Müller [Wed, 13 Feb 2019 14:51:25 +0000 (15:51 +0100)]
ref #8030 further tests

5 years agoref #8030 add tests for nameService (not yet finished) and fixing updateCache handlin...
Andreas Müller [Wed, 13 Feb 2019 13:49:42 +0000 (14:49 +0100)]
ref #8030 add tests for nameService (not yet finished) and fixing updateCache handling in TaxonName

5 years agoref #8030 Move cache updating to model classes, no tests yet
Andreas Müller [Wed, 13 Feb 2019 12:20:19 +0000 (13:20 +0100)]
ref #8030 Move cache updating to model classes, no tests yet

5 years agoref #7874 fix incorrect nomTitle test
Andreas Müller [Wed, 13 Feb 2019 12:17:36 +0000 (13:17 +0100)]
ref #7874 fix incorrect nomTitle test

5 years agocleanup
Andreas Müller [Wed, 13 Feb 2019 12:12:10 +0000 (13:12 +0100)]
cleanup

5 years agoref #7874 adding missing testcase related to Person nomenclatural title genration
Andreas Kohlbecker [Tue, 12 Feb 2019 10:41:03 +0000 (11:41 +0100)]
ref #7874 adding missing testcase related to Person nomenclatural title genration

5 years agominor
Katja Luther [Tue, 12 Feb 2019 07:59:39 +0000 (08:59 +0100)]
minor

5 years agoref #7998 Add service method for UuidAndTitleCache by term type
Patrick Plitzner [Mon, 11 Feb 2019 10:28:13 +0000 (11:28 +0100)]
ref #7998 Add service method for UuidAndTitleCache by term type

5 years agoref #7849 make byKey() static
Andreas Müller [Fri, 8 Feb 2019 12:54:51 +0000 (13:54 +0100)]
ref #7849 make byKey() static

5 years agoref #7849 add byKey() to TermDisplayEnum
Andreas Müller [Fri, 8 Feb 2019 12:28:28 +0000 (13:28 +0100)]
ref #7849 add byKey() to TermDisplayEnum

5 years agoref #6805 Add position parameter to service method for adding child node
Patrick Plitzner [Fri, 8 Feb 2019 11:06:18 +0000 (12:06 +0100)]
ref #6805 Add position parameter to service method for adding child node

5 years agoref #8062: add editorPreferencePredicates to PreferencePredicates and create enums
Katja Luther [Thu, 7 Feb 2019 15:34:46 +0000 (16:34 +0100)]
ref #8062: add editorPreferencePredicates to PreferencePredicates and create enums

5 years agoref #8062 fix NPE in TaxonGraphTest
Andreas Müller [Thu, 7 Feb 2019 14:20:16 +0000 (15:20 +0100)]
ref #8062 fix NPE in TaxonGraphTest

5 years agoref #8062 first implementation to delete default preferences (only for cdmlib predicates)
Andreas Müller [Thu, 7 Feb 2019 13:14:43 +0000 (14:14 +0100)]
ref #8062 first implementation to delete default preferences (only for cdmlib predicates)

5 years agoref #8069 renaming messages to validation problems
Andreas Kohlbecker [Thu, 7 Feb 2019 08:39:26 +0000 (09:39 +0100)]
ref #8069 renaming messages to validation problems

5 years agofix #8066 doing a forced flush before changing the authentication
Andreas Kohlbecker [Wed, 6 Feb 2019 12:10:43 +0000 (13:10 +0100)]
fix #8066 doing a forced flush before changing the authentication

5 years agoref #8064 ref #7648 autocreation of missing default secRef value in cdm preference...
Andreas Kohlbecker [Tue, 5 Feb 2019 14:02:39 +0000 (15:02 +0100)]
ref #8064 ref #7648 autocreation of missing default secRef value in cdm preference model.taxonGraph.secRefUuid/

5 years agofix #8064 fixing NPE in AbstractHibernateTaxonGraphProcessor.assureSingleTaxon()...
Andreas Kohlbecker [Tue, 5 Feb 2019 12:38:10 +0000 (13:38 +0100)]
fix #8064 fixing NPE in AbstractHibernateTaxonGraphProcessor.assureSingleTaxon() - taxa may be missing a sec ref

5 years agoref #8059 fixing RegistrationServiceImpl.assureIsPersisted() for situations when...
Andreas Kohlbecker [Mon, 4 Feb 2019 11:24:37 +0000 (12:24 +0100)]
ref #8059 fixing RegistrationServiceImpl.assureIsPersisted() for situations when the save does not persist immediately

5 years agoref #3767 ref #3572 some more tests for DOI parsing
Andreas Müller [Mon, 4 Feb 2019 09:15:06 +0000 (10:15 +0100)]
ref #3767 ref #3572 some more tests for DOI parsing

5 years agoref #3767 ref #3572 add prefix parsing without http to DOI
Andreas Müller [Mon, 4 Feb 2019 01:10:05 +0000 (02:10 +0100)]
ref #3767 ref #3572 add prefix parsing without http to DOI

5 years agoref #8041 correct regex quotation method implemented in CdmUtils
Andreas Müller [Sat, 2 Feb 2019 09:07:04 +0000 (10:07 +0100)]
ref #8041 correct regex quotation method implemented in CdmUtils

5 years agofix #7978 registrationDTOs ordered by registration date
Andreas Kohlbecker [Fri, 1 Feb 2019 15:26:55 +0000 (16:26 +0100)]
fix #7978 registrationDTOs ordered by registration date

5 years agoref #7874 added reference to ticket to test
Andreas Müller [Fri, 1 Feb 2019 13:26:22 +0000 (14:26 +0100)]
ref #7874 added reference to ticket to test

5 years agoref #7874 implement cache update for additional caches
Andreas Müller [Fri, 1 Feb 2019 13:21:49 +0000 (14:21 +0100)]
ref #7874 implement cache update for additional caches

5 years agocleanup
Andreas Müller [Fri, 1 Feb 2019 13:20:30 +0000 (14:20 +0100)]
cleanup

5 years agoref #7854 Fix NPE in TaxonDistributionDTO (2nd try)
Andreas Müller [Thu, 31 Jan 2019 17:12:36 +0000 (18:12 +0100)]
ref #7854  Fix NPE in TaxonDistributionDTO (2nd try)

5 years agoref #8041 Add CdmUtils method to trim a string of non-word characters
Patrick Plitzner [Thu, 31 Jan 2019 12:30:34 +0000 (13:30 +0100)]
ref #8041 Add CdmUtils method to trim a string of non-word characters

5 years agoref #7481 adding BookSection to inReference constraints
Andreas Kohlbecker [Thu, 31 Jan 2019 12:38:52 +0000 (13:38 +0100)]
ref #7481 adding BookSection to inReference constraints

5 years agoref #8039 additional addTypeDesignation method in RegistrationService
Andreas Kohlbecker [Thu, 31 Jan 2019 12:32:50 +0000 (13:32 +0100)]
ref #8039 additional addTypeDesignation method in RegistrationService

5 years agoref #7854 Fix NPE in TaxonDistributionDTO
Andreas Müller [Thu, 31 Jan 2019 12:03:52 +0000 (13:03 +0100)]
ref #7854  Fix NPE in TaxonDistributionDTO

5 years agoref #7972, ref #8042 permitting remoting access to ROLE_PROJECT_MANAGER
Andreas Kohlbecker [Thu, 31 Jan 2019 10:46:21 +0000 (11:46 +0100)]
ref #7972, ref #8042 permitting remoting access to ROLE_PROJECT_MANAGER

5 years agoref #7854: change label for term display
Katja Luther [Wed, 30 Jan 2019 09:32:51 +0000 (10:32 +0100)]
ref #7854: change label for term display

5 years agoref #7977 OccurrencePortalController: mediaSpecimens with complete sources
Andreas Kohlbecker [Tue, 29 Jan 2019 20:39:57 +0000 (21:39 +0100)]
ref #7977 OccurrencePortalController: mediaSpecimens with complete sources

5 years agoref #8031 proper creation of empty registration workingsets in loadWorkingSetByRefere...
Andreas Kohlbecker [Tue, 29 Jan 2019 11:54:36 +0000 (12:54 +0100)]
ref #8031 proper creation of empty registration workingsets in loadWorkingSetByReferenceUuid

5 years agoextending bean init strategy in RegistrationWorkingSetService to avoid potential...
Andreas Kohlbecker [Tue, 29 Jan 2019 10:51:17 +0000 (11:51 +0100)]
extending bean init strategy in RegistrationWorkingSetService to avoid potential LazyInitializationExeptions

5 years agoref #7874 test for nomenclaturalTitle cache updater and fixing problem in Identifiabl...
Andreas Kohlbecker [Tue, 29 Jan 2019 10:42:05 +0000 (11:42 +0100)]
ref #7874 test for nomenclaturalTitle cache updater and fixing problem in IdentifiableServiceBase
which prevented from running the updater when titleCache was protected

5 years agoref #7600 removing obsolete method _setTeamMembers(...)
Andreas Kohlbecker [Mon, 28 Jan 2019 13:28:42 +0000 (14:28 +0100)]
ref #7600 removing obsolete method _setTeamMembers(...)

5 years agominor
Andreas Müller [Fri, 25 Jan 2019 14:20:03 +0000 (15:20 +0100)]
minor

5 years agominor
Andreas Müller [Fri, 25 Jan 2019 13:51:59 +0000 (14:51 +0100)]
minor

5 years agoref #7680: set TaxonNode.setTaxon public and new saveMethod for taxonnodes
Katja Luther [Fri, 25 Jan 2019 10:33:33 +0000 (11:33 +0100)]
ref #7680: set TaxonNode.setTaxon public and new saveMethod for taxonnodes

5 years agoref #7977 TypeDesignationController.doGet() method
Andreas Kohlbecker [Thu, 24 Jan 2019 15:17:02 +0000 (16:17 +0100)]
ref #7977 TypeDesignationController.doGet() method

5 years agoref #6805 Set moved node as CDM entity for UpdateResult
Patrick Plitzner [Mon, 21 Jan 2019 14:33:56 +0000 (15:33 +0100)]
ref #6805 Set moved node as CDM entity for UpdateResult

5 years agocleanup ClassificationServiceImplTest
Andreas Müller [Fri, 18 Jan 2019 22:37:55 +0000 (23:37 +0100)]
cleanup ClassificationServiceImplTest

5 years agocleanup ClassificationServiceImplTest
Andreas Müller [Fri, 18 Jan 2019 22:19:12 +0000 (23:19 +0100)]
cleanup ClassificationServiceImplTest

5 years agoWhitespace for TermDisplayEnums
Andreas Müller [Fri, 18 Jan 2019 22:10:00 +0000 (23:10 +0100)]
Whitespace for TermDisplayEnums

5 years agominor
Andreas Müller [Fri, 18 Jan 2019 22:08:51 +0000 (23:08 +0100)]
minor

5 years agoRemove permSize from launcher arguments
Patrick Plitzner [Fri, 18 Jan 2019 09:42:54 +0000 (10:42 +0100)]
Remove permSize from launcher arguments

5 years agoremoving ourdated PermSize stuff
Andreas Kohlbecker [Thu, 17 Jan 2019 12:47:56 +0000 (13:47 +0100)]
removing ourdated PermSize stuff

5 years agoremove generic references from result for inReference selection
Katja Luther [Mon, 14 Jan 2019 14:47:20 +0000 (15:47 +0100)]
remove generic references from result for inReference selection

5 years agoref #7995 adapting test to use updateStatusAndDate
Andreas Kohlbecker [Wed, 16 Jan 2019 07:47:14 +0000 (08:47 +0100)]
ref #7995 adapting test to use updateStatusAndDate

5 years agoref #7995 extra method to manage the registration date when the status is set, setSta...
Andreas Kohlbecker [Wed, 16 Jan 2019 07:15:38 +0000 (08:15 +0100)]
ref #7995 extra method to manage the registration date when the status is set, setStatus reverted

5 years agoref #7995 set and unset registrationDate when registration status changes - doc
Andreas Kohlbecker [Tue, 15 Jan 2019 13:43:12 +0000 (14:43 +0100)]
ref #7995 set and unset registrationDate when registration status changes - doc

5 years agofix #7995 set and unset registrationDate when registration status changes
Andreas Kohlbecker [Tue, 15 Jan 2019 13:39:24 +0000 (14:39 +0100)]
fix #7995 set and unset registrationDate when registration status changes

5 years agofix #7979 DateTimeJSONValueProcessor returns null for null
Andreas Kohlbecker [Tue, 15 Jan 2019 12:12:54 +0000 (13:12 +0100)]
fix #7979 DateTimeJSONValueProcessor returns null for null

5 years agofix compile errors after cleanup
Andreas Müller [Mon, 14 Jan 2019 17:35:20 +0000 (18:35 +0100)]
fix compile errors after cleanup

5 years agofix incorrect handling of empty notes in AnnotationMapper
Andreas Müller [Mon, 14 Jan 2019 17:26:17 +0000 (18:26 +0100)]
fix incorrect handling of empty notes in AnnotationMapper

5 years agoref #3474 try to fix CCE when moving a term in the country vocabulary
Andreas Müller [Mon, 14 Jan 2019 17:25:46 +0000 (18:25 +0100)]
ref #3474  try to fix CCE when moving a term in the country vocabulary