Andreas Müller [Sat, 7 Jan 2023 21:19:21 +0000 (22:19 +0100)]
unify database schemupdater packages
Andreas Müller [Fri, 6 Jan 2023 18:11:48 +0000 (19:11 +0100)]
ref #6343, ref 6794 fix creation of OrderedTermVocabulary in imports
Andreas Müller [Fri, 6 Jan 2023 17:02:38 +0000 (18:02 +0100)]
ref #10201 additional update script for synonym type
Andreas Müller [Fri, 6 Jan 2023 17:01:24 +0000 (18:01 +0100)]
minor
Andreas Müller [Fri, 6 Jan 2023 10:12:42 +0000 (11:12 +0100)]
ref #10072 remove file-appender from cdmlib-test log4j2-test
Andreas Müller [Thu, 5 Jan 2023 19:49:47 +0000 (20:49 +0100)]
ref #10055 upgrade postgresql to 42.5.1 in cdmlib
jenkins [Thu, 5 Jan 2023 16:29:40 +0000 (17:29 +0100)]
Updating develop poms back to pre merge state
jenkins [Thu, 5 Jan 2023 16:29:38 +0000 (17:29 +0100)]
Merge branch 'master' into develop
jenkins [Thu, 5 Jan 2023 16:29:37 +0000 (17:29 +0100)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 5 Jan 2023 16:29:31 +0000 (17:29 +0100)]
Merge branch 'release/5.35.0'
jenkins [Thu, 5 Jan 2023 16:16:30 +0000 (17:16 +0100)]
updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins [Thu, 5 Jan 2023 13:41:55 +0000 (14:41 +0100)]
updating poms for 5.36.0-SNAPSHOT development
Andreas Müller [Thu, 5 Jan 2023 13:38:29 +0000 (14:38 +0100)]
ref #10072 remove logging to file in cdmlib log4j2.xml -s
Andreas Müller [Thu, 5 Jan 2023 13:22:26 +0000 (14:22 +0100)]
javadoc
Andreas Müller [Thu, 5 Jan 2023 11:13:30 +0000 (12:13 +0100)]
ref #6407 add commented 3.x version to compiler plugin
Andreas Müller [Thu, 5 Jan 2023 11:11:11 +0000 (12:11 +0100)]
cleanup
Andreas Müller [Thu, 5 Jan 2023 00:05:42 +0000 (01:05 +0100)]
ref #10214 rename CdmCacheBase to CdmPermanentCacheBase
Andreas Müller [Wed, 4 Jan 2023 22:32:30 +0000 (23:32 +0100)]
fix #10214 fix term (default) cache configuration handling
Andreas Müller [Wed, 4 Jan 2023 19:46:36 +0000 (20:46 +0100)]
cleanup
Andreas Müller [Wed, 4 Jan 2023 18:59:47 +0000 (19:59 +0100)]
ref #10077 remove statistics setting from ehCache config as it is deprectated
Signed-off-by: Andreas Müller <a.mueller@bgbm.org>
Andreas Müller [Wed, 4 Jan 2023 17:24:13 +0000 (18:24 +0100)]
ref #10201 fix dozer test for synonym type mapping
Andreas Müller [Wed, 4 Jan 2023 15:08:53 +0000 (16:08 +0100)]
cleanup
Andreas Müller [Wed, 4 Jan 2023 15:08:04 +0000 (16:08 +0100)]
javadoc for TDWG ontology mapping classes
Andreas Müller [Wed, 4 Jan 2023 12:27:34 +0000 (13:27 +0100)]
try to fix test running in suite (cont.)
Andreas Müller [Wed, 4 Jan 2023 12:04:19 +0000 (13:04 +0100)]
try to fix test running in suite
Andreas Müller [Wed, 4 Jan 2023 10:59:37 +0000 (11:59 +0100)]
cleanup
Andreas Müller [Wed, 4 Jan 2023 10:55:22 +0000 (11:55 +0100)]
ref #10182 adding test to find out what the validation behavior is during load
Andreas Müller [Tue, 3 Jan 2023 21:25:06 +0000 (22:25 +0100)]
add OccurrenceStatus to PermissionClass
Andreas Müller [Tue, 3 Jan 2023 21:15:51 +0000 (22:15 +0100)]
add DerivationEvent to PermissionClass
Andreas Müller [Tue, 3 Jan 2023 14:54:27 +0000 (15:54 +0100)]
ref #10196 fix findByTermType
Andreas Müller [Tue, 3 Jan 2023 14:54:00 +0000 (15:54 +0100)]
cleanup
Andreas Müller [Tue, 3 Jan 2023 14:53:21 +0000 (15:53 +0100)]
commit only
Andreas Müller [Tue, 3 Jan 2023 11:29:36 +0000 (12:29 +0100)]
javadoc
Andreas Müller [Tue, 3 Jan 2023 11:27:28 +0000 (12:27 +0100)]
ref #2506, ref #10182 fix clone method for DerivedUnit.status
Andreas Müller [Tue, 3 Jan 2023 11:26:38 +0000 (12:26 +0100)]
cleanup
Andreas Müller [Sat, 31 Dec 2022 10:48:35 +0000 (11:48 +0100)]
Revert " fix #3408, ref #9359 remove springmodules dependency by workaround in AbstractOaiPmhController"
This reverts commit
cbe13549e0a30b0dd4e3553cb48c7a34ead84e3b.
Andreas Müller [Thu, 29 Dec 2022 11:12:50 +0000 (12:12 +0100)]
cleanup
Andreas Müller [Tue, 27 Dec 2022 20:15:43 +0000 (21:15 +0100)]
ref #10216 fix classification test path
Andreas Müller [Tue, 27 Dec 2022 18:07:05 +0000 (19:07 +0100)]
cleanup
Andreas Müller [Tue, 27 Dec 2022 15:42:26 +0000 (16:42 +0100)]
cleanup and adapt spelling suggestion to spring-hibernate5 dao
Andreas Müller [Tue, 27 Dec 2022 12:37:06 +0000 (13:37 +0100)]
cleanup
Andreas Müller [Tue, 27 Dec 2022 12:02:33 +0000 (13:02 +0100)]
fix #3408, ref #9359 remove springmodules dependency by workaround in AbstractOaiPmhController
* fix fully after upgrading to spring 5.x and EhCache 3.x
Andreas Müller [Tue, 27 Dec 2022 11:33:29 +0000 (12:33 +0100)]
cleanup
Andreas Müller [Mon, 26 Dec 2022 22:56:42 +0000 (23:56 +0100)]
cleanup
Andreas Müller [Mon, 26 Dec 2022 21:17:13 +0000 (22:17 +0100)]
cleanup
Andreas Müller [Mon, 26 Dec 2022 21:00:41 +0000 (22:00 +0100)]
cleanup
Andreas Müller [Mon, 26 Dec 2022 20:54:08 +0000 (21:54 +0100)]
cleanup
Andreas Müller [Mon, 26 Dec 2022 19:17:45 +0000 (20:17 +0100)]
cleanup
Andreas Müller [Mon, 26 Dec 2022 18:34:51 +0000 (19:34 +0100)]
cleanup
Andreas Müller [Mon, 26 Dec 2022 15:21:19 +0000 (16:21 +0100)]
cleanup
Andreas Müller [Mon, 26 Dec 2022 13:00:16 +0000 (14:00 +0100)]
cleanup
Andreas Müller [Mon, 26 Dec 2022 12:09:47 +0000 (13:09 +0100)]
cleanup and javadoc
Andreas Müller [Thu, 22 Dec 2022 23:27:15 +0000 (00:27 +0100)]
cleanup
Andreas Müller [Wed, 21 Dec 2022 10:17:36 +0000 (11:17 +0100)]
cleanup and renaming for caching
Katja Luther [Wed, 21 Dec 2022 09:41:58 +0000 (10:41 +0100)]
ref #10211: remove new FormatKey[] {}
Katja Luther [Wed, 21 Dec 2022 08:45:04 +0000 (09:45 +0100)]
ref #10211: minor
Andreas Müller [Tue, 20 Dec 2022 23:01:26 +0000 (00:01 +0100)]
cleanup
Andreas Müller [Tue, 20 Dec 2022 12:13:39 +0000 (13:13 +0100)]
ref #10182, ref #2506 add notNull to OccurrenceStatus.type to avoid meaningless status
Andreas Müller [Tue, 20 Dec 2022 09:23:09 +0000 (10:23 +0100)]
Add referencing object formatter for term nodes
Andreas Müller [Tue, 20 Dec 2022 08:24:42 +0000 (09:24 +0100)]
ref #10201 remove SynonymType.csv
Andreas Müller [Tue, 20 Dec 2022 08:24:11 +0000 (09:24 +0100)]
ref #10212 adapt formatters to usePlural
Andreas Müller [Tue, 20 Dec 2022 07:54:40 +0000 (08:54 +0100)]
ref #10201 add vocabulary removal for synonym types
Andreas Müller [Tue, 20 Dec 2022 05:30:43 +0000 (06:30 +0100)]
cleanup
Andreas Müller [Mon, 19 Dec 2022 20:38:35 +0000 (21:38 +0100)]
cleanup
Andreas Müller [Mon, 19 Dec 2022 15:50:17 +0000 (16:50 +0100)]
fix #10212 add usePlural to StateData
Andreas Müller [Mon, 19 Dec 2022 14:54:59 +0000 (15:54 +0100)]
ref #10194 fix FullCoverageDataGenerator for new constraint
Andreas Müller [Mon, 19 Dec 2022 14:26:46 +0000 (15:26 +0100)]
ref #10194 add either reference or specimen constraint
Andreas Müller [Mon, 19 Dec 2022 14:24:15 +0000 (15:24 +0100)]
cleanup
Andreas Müller [Mon, 19 Dec 2022 13:04:19 +0000 (14:04 +0100)]
ref #10198 revert
6b68bfb9 (before and after handling in moveTerm)
Andreas Müller [Mon, 19 Dec 2022 12:59:33 +0000 (13:59 +0100)]
ref #10198 use more intuitive parameter names and cleanup
Andreas Müller [Mon, 19 Dec 2022 11:17:36 +0000 (12:17 +0100)]
cleanup
Andreas Müller [Mon, 19 Dec 2022 11:11:20 +0000 (12:11 +0100)]
cleanup
Katja Luther [Mon, 19 Dec 2022 10:44:34 +0000 (11:44 +0100)]
ref #10211: add categorical and quantitative data to cdmlight export
Katja Luther [Fri, 16 Dec 2022 12:42:51 +0000 (13:42 +0100)]
ref #10202: add preference predicate
Katja Luther [Fri, 16 Dec 2022 09:11:12 +0000 (10:11 +0100)]
adapt test to using https for gbif webservice
Katja Luther [Thu, 15 Dec 2022 14:27:49 +0000 (15:27 +0100)]
ref #10204: code cleaning
Katja Luther [Thu, 15 Dec 2022 14:27:32 +0000 (15:27 +0100)]
ref #10204: catch media parsing exceptions and code cleaning
Katja Luther [Thu, 15 Dec 2022 08:57:35 +0000 (09:57 +0100)]
fix missing treeIndex in TaxonNodeDto
Andreas Müller [Wed, 14 Dec 2022 20:48:20 +0000 (21:48 +0100)]
ref #10196 remove fixmes and replace by todos where minor open issues are
Andreas Müller [Wed, 14 Dec 2022 19:32:33 +0000 (20:32 +0100)]
ref #10196 further adapt IOs and service layer to hybrid states
Andreas Müller [Wed, 14 Dec 2022 19:03:07 +0000 (20:03 +0100)]
cleanup
Andreas Müller [Wed, 14 Dec 2022 19:02:51 +0000 (20:02 +0100)]
ref #10196 fix state and character/feature handling in RowWrapperDTO and description save
* by casting not filtering for term class
Andreas Müller [Wed, 14 Dec 2022 18:57:52 +0000 (19:57 +0100)]
cleanup
Andreas Müller [Wed, 14 Dec 2022 15:27:34 +0000 (16:27 +0100)]
ref #10196 fix by findVocabulary by termtype list
Andreas Müller [Wed, 14 Dec 2022 14:24:40 +0000 (15:24 +0100)]
cleanup
Andreas Müller [Wed, 14 Dec 2022 14:12:08 +0000 (15:12 +0100)]
cleanup
Andreas Müller [Wed, 14 Dec 2022 13:54:15 +0000 (14:54 +0100)]
cleanup
Katja Luther [Wed, 14 Dec 2022 12:33:23 +0000 (13:33 +0100)]
ref #10198: implement test for moveTerm and fix move with position
Andreas Müller [Wed, 14 Dec 2022 10:47:22 +0000 (11:47 +0100)]
ref #6794 add deprecation and javadoc to OrderedTermVocabulary methods
Andreas Müller [Wed, 14 Dec 2022 10:42:47 +0000 (11:42 +0100)]
ref #10190 cleanup null check a bit
Andreas Müller [Wed, 14 Dec 2022 10:42:10 +0000 (11:42 +0100)]
cleanup
Andreas Müller [Wed, 14 Dec 2022 08:22:39 +0000 (09:22 +0100)]
cleaup and remove deprecated methods from TermTree
Andreas Müller [Tue, 13 Dec 2022 23:33:59 +0000 (00:33 +0100)]
ref #10201 make synonym type an enum in cdmlib (adapt dataset.dtd)
Andreas Müller [Tue, 13 Dec 2022 23:07:26 +0000 (00:07 +0100)]
ref #10201, ref #10194 adapt testH2 to cdmlib
Andreas Müller [Tue, 13 Dec 2022 22:36:59 +0000 (23:36 +0100)]
ref #10194 fix missing specimen_id in test data
Andreas Müller [Tue, 13 Dec 2022 22:12:24 +0000 (23:12 +0100)]
ref #10201 update script for synonym type change to enum
Andreas Müller [Tue, 13 Dec 2022 22:10:59 +0000 (23:10 +0100)]
cleanup
Andreas Müller [Tue, 13 Dec 2022 20:26:32 +0000 (21:26 +0100)]
cleanup FreeTextSearchIntegrationTest incl. data
Andreas Müller [Tue, 13 Dec 2022 19:43:49 +0000 (20:43 +0100)]
cleanup
Andreas Müller [Tue, 13 Dec 2022 17:14:34 +0000 (18:14 +0100)]
ref #10201 make synonym type an enum in cdmlib