cdmlib.git
2 years agoref #9761 add cultivarGroup column
Andreas Müller [Wed, 15 Sep 2021 11:59:13 +0000 (13:59 +0200)]
ref #9761 add cultivarGroup column

2 years agoref #9710: switch to dtos for descriptive data set and descriptions for character...
Katja Luther [Wed, 15 Sep 2021 10:28:43 +0000 (12:28 +0200)]
ref #9710: switch to dtos for descriptive data set and descriptions for character matrix

2 years agofix #9759 fix not existing protectedCache field in persistence matcher
Andreas Müller [Wed, 15 Sep 2021 09:30:13 +0000 (11:30 +0200)]
fix #9759 fix not existing protectedCache field in persistence matcher

2 years agofix #9759 fix missing deduplication for parsed person (and maybe also team)
Andreas Müller [Wed, 15 Sep 2021 08:55:36 +0000 (10:55 +0200)]
fix #9759 fix missing deduplication for parsed person (and maybe also team)

2 years agocleanup
Andreas Müller [Wed, 15 Sep 2021 08:42:06 +0000 (10:42 +0200)]
cleanup

2 years agoref #9757 further improve cultivar parsing
Andreas Müller [Tue, 14 Sep 2021 12:33:32 +0000 (14:33 +0200)]
ref #9757 further improve cultivar parsing

2 years agocleanup
Andreas Müller [Tue, 14 Sep 2021 12:32:37 +0000 (14:32 +0200)]
cleanup

2 years agoref #9754 , ref #9757 further improve cultivar name parsing and formatting
Andreas Müller [Tue, 14 Sep 2021 10:34:52 +0000 (12:34 +0200)]
ref #9754 , ref #9757 further improve cultivar name parsing and formatting

2 years agoref #9757 first implementation of cultivar parsing
Andreas Müller [Tue, 14 Sep 2021 07:49:24 +0000 (09:49 +0200)]
ref #9757 first implementation of cultivar parsing

2 years agocleanup
Andreas Müller [Tue, 14 Sep 2021 07:45:43 +0000 (09:45 +0200)]
cleanup

2 years agoref #9754 first implementation for cultivar formatter
Andreas Müller [Tue, 14 Sep 2021 07:43:45 +0000 (09:43 +0200)]
ref #9754 first implementation for cultivar formatter

2 years agoref #9747 add getCdmVocabularyUuids to Language
Andreas Müller [Mon, 13 Sep 2021 11:39:38 +0000 (13:39 +0200)]
ref #9747 add getCdmVocabularyUuids to Language

2 years agoref #9747 add getCdmVocabularyUuids to Language
Andreas Müller [Mon, 13 Sep 2021 11:26:22 +0000 (13:26 +0200)]
ref #9747 add getCdmVocabularyUuids to Language

2 years agocleanup
Andreas Müller [Mon, 13 Sep 2021 11:09:56 +0000 (13:09 +0200)]
cleanup

2 years agoimprove attribute names and handle all name identifier in cdmlight
Katja Luther [Thu, 9 Sep 2021 12:08:55 +0000 (14:08 +0200)]
improve attribute names and handle all name identifier in cdmlight

2 years agoref #9752 make it possible to add source with original information for imports
Andreas Müller [Thu, 9 Sep 2021 11:22:18 +0000 (13:22 +0200)]
ref #9752 make it possible to add source with original information for imports

2 years agoref #7646 , ref #9752 make "hort." parseable
Andreas Müller [Thu, 9 Sep 2021 11:21:35 +0000 (13:21 +0200)]
ref #7646 , ref #9752 make "hort." parseable

2 years agoref #9752 remove warning for getTitleWithoutYearAndAuthor for some refTypes
Andreas Müller [Thu, 9 Sep 2021 11:13:13 +0000 (13:13 +0200)]
ref #9752 remove warning for getTitleWithoutYearAndAuthor for some refTypes

2 years agofix #9706 reducing field visibility of sections to authors, pages and inReference
Andreas Kohlbecker [Thu, 9 Sep 2021 10:36:56 +0000 (12:36 +0200)]
fix #9706 reducing field visibility of sections to authors, pages and inReference

2 years agoref #9701 method to find the highest type status in a TypeDesignationWorkingSet
Andreas Kohlbecker [Thu, 9 Sep 2021 08:38:41 +0000 (10:38 +0200)]
ref #9701 method to find the highest type status in a TypeDesignationWorkingSet

2 years agoref #9701 taggedText to string method with exclude option
Andreas Kohlbecker [Thu, 9 Sep 2021 08:33:43 +0000 (10:33 +0200)]
ref #9701 taggedText to string method with exclude option

2 years ago fix #8438 removing all featureTree/* web services
Andreas Kohlbecker [Wed, 8 Sep 2021 12:16:49 +0000 (14:16 +0200)]
 fix #8438 removing all featureTree/* web services

2 years agoref #9747 add language to TermType.getEmptyDefinedTermBase
Andreas Müller [Tue, 7 Sep 2021 13:28:37 +0000 (15:28 +0200)]
ref #9747 add language to TermType.getEmptyDefinedTermBase

2 years agocleanup
Andreas Müller [Fri, 3 Sep 2021 09:18:45 +0000 (11:18 +0200)]
cleanup

2 years agoCleanup and javadoc
Andreas Müller [Wed, 1 Sep 2021 11:10:39 +0000 (13:10 +0200)]
Cleanup and javadoc

2 years agoref #9729, #9728, #9664 remove deprecated method setNomenclaturalTitle
Andreas Müller [Wed, 1 Sep 2021 11:08:10 +0000 (13:08 +0200)]
ref #9729, #9728, #9664 remove deprecated method setNomenclaturalTitle

2 years agoref #9729, #9728, #9664 remove calls to deprecated method setNomenclaturalTitle
Andreas Müller [Wed, 1 Sep 2021 11:03:29 +0000 (13:03 +0200)]
ref #9729, #9728, #9664 remove calls to deprecated method setNomenclaturalTitle

2 years agoref #9729, #9728, #9664 Adapt handling of nomenclaturalTitleCache setter and javadoc
Andreas Müller [Wed, 1 Sep 2021 10:47:14 +0000 (12:47 +0200)]
ref #9729, #9728, #9664 Adapt handling of nomenclaturalTitleCache setter and javadoc

2 years agocleanup
Andreas Müller [Wed, 1 Sep 2021 10:37:11 +0000 (12:37 +0200)]
cleanup

2 years agocleanup
Andreas Müller [Mon, 30 Aug 2021 18:20:34 +0000 (20:20 +0200)]
cleanup

3 years agoref #9737: adapt test to dummy lines -continue
Katja Luther [Mon, 23 Aug 2021 09:25:34 +0000 (11:25 +0200)]
ref #9737: adapt test to dummy lines -continue

3 years agoref #9737: adapt test to dummy lines
Katja Luther [Mon, 23 Aug 2021 09:19:20 +0000 (11:19 +0200)]
ref #9737: adapt test to dummy lines

3 years agoref #9737: add dummy lines to cdmLight export
Katja Luther [Mon, 23 Aug 2021 08:04:38 +0000 (10:04 +0200)]
ref #9737: add dummy lines to cdmLight export

3 years agofix #9738 fix recursion for only titleCache protected nomenclatural source
Andreas Müller [Sat, 21 Aug 2021 12:20:00 +0000 (14:20 +0200)]
fix #9738 fix recursion for only titleCache protected nomenclatural source

3 years agoadapted interface
Katja Luther [Wed, 18 Aug 2021 10:49:44 +0000 (12:49 +0200)]
adapted interface

3 years agoonly log lazy initialisation exception while remove null from collection
Katja Luther [Wed, 18 Aug 2021 10:46:55 +0000 (12:46 +0200)]
only log lazy initialisation exception while remove null from collection

3 years agoadaption to cleaned code
Katja Luther [Tue, 17 Aug 2021 10:38:02 +0000 (12:38 +0200)]
adaption to cleaned code

3 years agoref #9736: add name_fk and preferred source fk to specimen type table
Katja Luther [Tue, 17 Aug 2021 10:01:03 +0000 (12:01 +0200)]
ref #9736: add name_fk and preferred source fk to specimen type table

3 years agocode cleaning
Katja Luther [Mon, 16 Aug 2021 10:28:48 +0000 (12:28 +0200)]
code cleaning

3 years agoref #9736: new table for (specimen)typedesignations
Katja Luther [Mon, 16 Aug 2021 08:02:36 +0000 (10:02 +0200)]
ref  #9736: new table for (specimen)typedesignations

3 years agoref #9340, #9734, #9668: result should be of type DeleteResult
Katja Luther [Thu, 12 Aug 2021 09:36:23 +0000 (11:36 +0200)]
ref #9340, #9734, #9668: result should be of type DeleteResult

3 years agomissed to add adapted test
Katja Luther [Thu, 12 Aug 2021 06:32:16 +0000 (08:32 +0200)]
missed to add adapted test

3 years agoref #9340, #9734, #9668: further improvements for configurable sec handling during...
Katja Luther [Wed, 11 Aug 2021 12:48:27 +0000 (14:48 +0200)]
ref #9340, #9734, #9668: further improvements for configurable sec handling during taxon(base) operations

3 years agoref #9704: fix NPE for * in search
Katja Luther [Tue, 10 Aug 2021 09:49:33 +0000 (11:49 +0200)]
ref #9704: fix NPE for * in search

3 years agoref #9735: add type specimen to specimen table
Katja Luther [Tue, 10 Aug 2021 08:15:31 +0000 (10:15 +0200)]
ref #9735: add type specimen to specimen table

3 years agoUpdating develop poms back to pre merge state
jenkins [Tue, 3 Aug 2021 14:06:45 +0000 (16:06 +0200)]
Updating develop poms back to pre merge state

3 years agoMerge branch 'master' into develop
jenkins [Tue, 3 Aug 2021 14:06:44 +0000 (16:06 +0200)]
Merge branch 'master' into develop

3 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Tue, 3 Aug 2021 14:06:43 +0000 (16:06 +0200)]
updating develop poms to master versions to avoid merge conflicts

3 years agoMerge branch 'release/5.26.0' 5.26.0
jenkins [Tue, 3 Aug 2021 14:06:38 +0000 (16:06 +0200)]
Merge branch 'release/5.26.0'

3 years agoupdating poms for branch'release/5.26.0' with non-snapshot versions
jenkins [Tue, 3 Aug 2021 13:49:30 +0000 (15:49 +0200)]
updating poms for branch'release/5.26.0' with non-snapshot versions

3 years agoUpdating develop poms back to pre merge state
jenkins [Tue, 3 Aug 2021 13:11:45 +0000 (15:11 +0200)]
Updating develop poms back to pre merge state

3 years agoMerge branch 'master' into develop
jenkins [Tue, 3 Aug 2021 13:11:44 +0000 (15:11 +0200)]
Merge branch 'master' into develop

3 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Tue, 3 Aug 2021 13:11:43 +0000 (15:11 +0200)]
updating develop poms to master versions to avoid merge conflicts

3 years agoMerge branch 'release/5.26.0'
jenkins [Tue, 3 Aug 2021 13:11:38 +0000 (15:11 +0200)]
Merge branch 'release/5.26.0'

3 years agoupdating poms for branch'release/5.26.0' with non-snapshot versions
jenkins [Tue, 3 Aug 2021 12:54:20 +0000 (14:54 +0200)]
updating poms for branch'release/5.26.0' with non-snapshot versions

3 years agoupdating poms for 5.27.0-SNAPSHOT development
jenkins [Tue, 3 Aug 2021 12:43:30 +0000 (14:43 +0200)]
updating poms for 5.27.0-SNAPSHOT development

3 years agofix #9728 completing bean property Team.nomenclaturalTitleCache origin/release/5.26.0
Andreas Kohlbecker [Fri, 30 Jul 2021 12:31:09 +0000 (14:31 +0200)]
fix #9728 completing bean property Team.nomenclaturalTitleCache

3 years agoupdating ide jetty launcher
Andreas Kohlbecker [Mon, 26 Jul 2021 14:41:37 +0000 (16:41 +0200)]
updating ide jetty launcher

3 years agofix #9722 serialization of response by jackson
Andreas Kohlbecker [Thu, 22 Jul 2021 15:07:14 +0000 (17:07 +0200)]
fix #9722 serialization of response by jackson

3 years agoref #9721 individual labels for specimen scans - acc num + media title
Andreas Kohlbecker [Thu, 22 Jul 2021 11:44:25 +0000 (13:44 +0200)]
ref #9721 individual labels for specimen scans - acc num + media title

3 years agofix #9721 individual labels for specimen scans
Andreas Kohlbecker [Thu, 22 Jul 2021 10:09:23 +0000 (12:09 +0200)]
fix #9721 individual labels for specimen scans

3 years agofix #9719 https for repositoy urls
Andreas Kohlbecker [Tue, 20 Jul 2021 09:12:11 +0000 (11:12 +0200)]
fix #9719 https for repositoy urls

3 years agocleaning developers section in pom.xml
Andreas Kohlbecker [Tue, 20 Jul 2021 09:11:46 +0000 (11:11 +0200)]
cleaning developers section in pom.xml

3 years agoref #9714 making CondensedDistributionConfiguration serializable
Andreas Kohlbecker [Sat, 17 Jul 2021 13:58:46 +0000 (15:58 +0200)]
ref #9714 making CondensedDistributionConfiguration serializable

3 years agomove escapeSingleQuote to base class
Andreas Müller [Thu, 15 Jul 2021 15:00:57 +0000 (17:00 +0200)]
move escapeSingleQuote to base class

3 years agoUpdating develop poms back to pre merge state
jenkins [Thu, 15 Jul 2021 14:48:41 +0000 (16:48 +0200)]
Updating develop poms back to pre merge state

3 years agoMerge branch 'master' into develop
jenkins [Thu, 15 Jul 2021 14:48:40 +0000 (16:48 +0200)]
Merge branch 'master' into develop

3 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 15 Jul 2021 14:48:39 +0000 (16:48 +0200)]
updating develop poms to master versions to avoid merge conflicts

3 years agoMerge branch 'release/5.25.0' 5.25.0
jenkins [Thu, 15 Jul 2021 14:48:33 +0000 (16:48 +0200)]
Merge branch 'release/5.25.0'

3 years agoupdating poms for branch'release/5.25.0' with non-snapshot versions
jenkins [Thu, 15 Jul 2021 14:26:55 +0000 (16:26 +0200)]
updating poms for branch'release/5.25.0' with non-snapshot versions

3 years agoref #4311 fix single quote escape in collectorTitle updater (cont.)
Andreas Müller [Thu, 15 Jul 2021 14:13:21 +0000 (16:13 +0200)]
ref #4311 fix single quote escape in collectorTitle updater (cont.)

3 years agoref #4311 fix single quote escape in collectorTitle updater
Andreas Müller [Thu, 15 Jul 2021 14:09:10 +0000 (16:09 +0200)]
ref #4311 fix single quote escape in collectorTitle updater

3 years agoupdating poms for 5.26.0-SNAPSHOT development
jenkins [Thu, 15 Jul 2021 13:52:45 +0000 (15:52 +0200)]
updating poms for 5.26.0-SNAPSHOT development

3 years agoupdating poms for 5.25.0 branch with snapshot versions origin/release/5.25.0
jenkins [Thu, 15 Jul 2021 13:52:44 +0000 (15:52 +0200)]
updating poms for 5.25.0 branch with snapshot versions

3 years agoref #9657 cleanup and make Partial comparator configurable for null handling
Andreas Müller [Thu, 15 Jul 2021 13:23:50 +0000 (15:23 +0200)]
ref #9657 cleanup and make Partial comparator configurable for null handling

3 years agoref #9657 fully implement compare method for partials used in CDM
Andreas Müller [Thu, 15 Jul 2021 12:47:29 +0000 (14:47 +0200)]
ref #9657 fully implement compare method for partials used in CDM

3 years agoref #9657 fix gatheringDate compare for empty dates (e.g. freetext dates)
Andreas Müller [Thu, 15 Jul 2021 09:52:56 +0000 (11:52 +0200)]
ref #9657 fix gatheringDate compare for empty dates (e.g. freetext dates)

3 years agofix #9705 fix case with empty reference having only protected titleCache
Andreas Müller [Tue, 13 Jul 2021 11:57:24 +0000 (13:57 +0200)]
fix #9705 fix case with empty reference having only protected titleCache

3 years agofix #9705 remove nomRef token and fix nomRef formatting for references without title
Andreas Müller [Tue, 13 Jul 2021 08:54:33 +0000 (10:54 +0200)]
fix #9705 remove nomRef token and fix nomRef formatting for references without title

3 years agoadapt setter for CdmLightExportConfigurator.condensedDistributionConfiguration
Andreas Müller [Mon, 12 Jul 2021 15:18:22 +0000 (17:18 +0200)]
adapt setter for CdmLightExportConfigurator.condensedDistributionConfiguration

3 years agocleanup
Andreas Müller [Mon, 12 Jul 2021 14:12:54 +0000 (16:12 +0200)]
cleanup

3 years agoimprove logging for existing identifiers in IdentifierImport
Andreas Müller [Mon, 12 Jul 2021 14:12:24 +0000 (16:12 +0200)]
improve logging for existing identifiers in IdentifierImport

3 years agoadd factory method to CdmLightExportConfigurator
Andreas Müller [Mon, 12 Jul 2021 14:11:58 +0000 (16:11 +0200)]
add factory method to CdmLightExportConfigurator

3 years agocleanup
Andreas Müller [Mon, 12 Jul 2021 14:10:49 +0000 (16:10 +0200)]
cleanup

3 years agofix #8140 #note-5 removed paralectotype from list of sourcable type designation...
Andreas Müller [Fri, 9 Jul 2021 13:06:58 +0000 (15:06 +0200)]
fix #8140 #note-5  removed paralectotype from list of sourcable type designation status

3 years agofix null check
Katja Luther [Thu, 8 Jul 2021 18:42:02 +0000 (20:42 +0200)]
fix null check

3 years agocleanup CdmLightClassificationExport
Andreas Müller [Thu, 8 Jul 2021 18:11:49 +0000 (20:11 +0200)]
cleanup CdmLightClassificationExport

3 years agocleanup (cont.)
Andreas Müller [Thu, 8 Jul 2021 17:19:42 +0000 (19:19 +0200)]
cleanup (cont.)

3 years agocleanup
Andreas Müller [Thu, 8 Jul 2021 16:52:18 +0000 (18:52 +0200)]
cleanup

3 years agoref #9703 Improve handling of type designations with no status in TypeDesignationSetM...
Andreas Müller [Thu, 8 Jul 2021 16:49:23 +0000 (18:49 +0200)]
ref #9703 Improve handling of type designations with no status in TypeDesignationSetManager

3 years agocleanup
Andreas Müller [Thu, 8 Jul 2021 16:43:00 +0000 (18:43 +0200)]
cleanup

3 years agoadapt cdmLight export test to synonym symbols
Katja Luther [Thu, 8 Jul 2021 11:58:40 +0000 (13:58 +0200)]
adapt cdmLight export test to synonym symbols

3 years agofix typedesignation String with citation
Katja Luther [Thu, 8 Jul 2021 11:01:46 +0000 (13:01 +0200)]
fix typedesignation String with citation

3 years agofix #9702 handle specimen without field unit correctly in TypeDesignationSetManager
Andreas Müller [Thu, 8 Jul 2021 10:49:19 +0000 (12:49 +0200)]
fix #9702 handle specimen without field unit correctly in TypeDesignationSetManager

3 years agoref #9702 add factory method for Collection
Andreas Müller [Thu, 8 Jul 2021 10:47:02 +0000 (12:47 +0200)]
ref #9702 add factory method for Collection

3 years agofix #9237 fix incorrect sortIndex updating (use existing sortindex, not id order)
Andreas Müller [Wed, 7 Jul 2021 16:08:09 +0000 (18:08 +0200)]
fix #9237 fix incorrect sortIndex updating (use existing sortindex, not id order)

3 years agocleanup
Andreas Müller [Wed, 7 Jul 2021 16:06:29 +0000 (18:06 +0200)]
cleanup

3 years agocleanup
Andreas Müller [Wed, 7 Jul 2021 15:17:39 +0000 (17:17 +0200)]
cleanup

3 years agoremove unused methods in AgentDao and AgentService (cont.)
Andreas Müller [Wed, 7 Jul 2021 15:17:06 +0000 (17:17 +0200)]
remove unused methods in AgentDao and AgentService (cont.)

3 years agoremove unused methods in AgentDao and AgentService
Andreas Müller [Wed, 7 Jul 2021 15:06:16 +0000 (17:06 +0200)]
remove unused methods in AgentDao and AgentService