Andreas Kohlbecker [Fri, 15 Dec 2017 13:48:51 +0000 (14:48 +0100)]
removing debug output
Andreas Kohlbecker [Fri, 15 Dec 2017 13:48:27 +0000 (14:48 +0100)]
updating comment to now refer to CdmRepository
Andreas Kohlbecker [Fri, 15 Dec 2017 13:47:55 +0000 (14:47 +0100)]
ignoring DerivedUnitConverterIntegrationTest instead of DerivedUnitConverterTest
Andreas Müller [Fri, 15 Dec 2017 13:27:17 +0000 (14:27 +0100)]
fix IdentifiableServiceBaseTest
Andreas Müller [Fri, 15 Dec 2017 13:19:11 +0000 (14:19 +0100)]
fix NumberFormatException in RegistrationIdentifierMinter
Katja Luther [Fri, 15 Dec 2017 13:04:53 +0000 (14:04 +0100)]
set failing tests to ignore to build cdmlib
Katja Luther [Fri, 15 Dec 2017 12:12:35 +0000 (13:12 +0100)]
implement possibility to get cdmEntities by identifiers in dialogs
Andreas Müller [Fri, 15 Dec 2017 10:19:50 +0000 (11:19 +0100)]
cleanup
Andreas Kohlbecker [Thu, 14 Dec 2017 19:32:14 +0000 (20:32 +0100)]
ref #7114 DerivedUnitConverter now deletes convertion sources:
- DerivedUnitConverterFactory intoduced
- DerivedUnitConverterFactory as spring bean in all appcontexts
- tests adapted
Andreas Kohlbecker [Thu, 14 Dec 2017 15:26:25 +0000 (16:26 +0100)]
fixing java doc
Andreas Kohlbecker [Thu, 14 Dec 2017 15:26:12 +0000 (16:26 +0100)]
ref #7114 implementing test to reproduce the issue
Andreas Kohlbecker [Thu, 14 Dec 2017 14:15:45 +0000 (15:15 +0100)]
ref #6361 removing TaxonName.DTYPE and Reference.DTYPE
- changing dbscripts/001-cdm.h2.sql
- adapting test data sets
Andreas Kohlbecker [Thu, 14 Dec 2017 11:18:06 +0000 (12:18 +0100)]
bean loading priority
Andreas Kohlbecker [Thu, 14 Dec 2017 11:17:47 +0000 (12:17 +0100)]
allowing to override property files for test environments
Andreas Kohlbecker [Wed, 13 Dec 2017 16:41:15 +0000 (17:41 +0100)]
data source bean id aka instance name now available from the Spring environment
Andreas Kohlbecker [Wed, 13 Dec 2017 16:39:47 +0000 (17:39 +0100)]
ref #7137 improvements to the RegistrationIdentifierMinter:
- addin getters
- logging a warning when configuration incomplete
Andreas Kohlbecker [Wed, 13 Dec 2017 14:15:03 +0000 (15:15 +0100)]
ref #7137 RegistrationIdentifierMinter implemented
Patrick Plitzner [Fri, 8 Dec 2017 14:55:25 +0000 (15:55 +0100)]
Do not add null to feature set
Andreas Kohlbecker [Fri, 8 Dec 2017 14:41:19 +0000 (15:41 +0100)]
ref #7130 enhancing filter capabilities of RegistrationService
- extending Restrictions by support for property paths
Andreas Kohlbecker [Thu, 7 Dec 2017 15:38:17 +0000 (16:38 +0100)]
configuring antrunner in lifecycle-mapping
Katja Luther [Thu, 7 Dec 2017 11:03:19 +0000 (12:03 +0100)]
ref #7078: add uuidAndTitleCacheComparator to sort by rank and name
Katja Luther [Thu, 7 Dec 2017 08:56:13 +0000 (09:56 +0100)]
fix #7077: when delete a typeDesignation, remove it from registration
jenkins [Tue, 5 Dec 2017 15:07:31 +0000 (16:07 +0100)]
Updating develop poms back to pre merge state
jenkins [Tue, 5 Dec 2017 15:07:30 +0000 (16:07 +0100)]
Merge branch 'master' into develop
jenkins [Tue, 5 Dec 2017 15:07:29 +0000 (16:07 +0100)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Tue, 5 Dec 2017 15:07:25 +0000 (16:07 +0100)]
Merge branch 'release/4.12.0'
jenkins [Tue, 5 Dec 2017 14:50:24 +0000 (15:50 +0100)]
updating poms for branch'release/4.12.0' with non-snapshot versions
jenkins [Tue, 5 Dec 2017 14:18:29 +0000 (15:18 +0100)]
updating poms for 4.13.0-SNAPSHOT development
Katja Luther [Tue, 5 Dec 2017 13:20:20 +0000 (14:20 +0100)]
fix getUuidAndTitleCache for *
Katja Luther [Tue, 5 Dec 2017 12:39:24 +0000 (13:39 +0100)]
fix problem when reusing name for new taxon
Andreas Müller [Tue, 5 Dec 2017 10:46:52 +0000 (11:46 +0100)]
undo unwanted changes
Andreas Müller [Tue, 5 Dec 2017 10:45:29 +0000 (11:45 +0100)]
fix compile issue in CdmPermissionEvaluator
Andreas Müller [Tue, 5 Dec 2017 10:40:59 +0000 (11:40 +0100)]
ref #7109 fix tests for nom. valid
Andreas Müller [Tue, 5 Dec 2017 10:04:48 +0000 (11:04 +0100)]
#7109 rename abbrev label from nom. valid to nom. val.
Andreas Müller [Tue, 5 Dec 2017 10:03:14 +0000 (11:03 +0100)]
cleanup
Andreas Kohlbecker [Mon, 4 Dec 2017 15:07:33 +0000 (16:07 +0100)]
disabling most mapping in lifecycle-mapping-metadata.xml since some are obsoltete and others are causing probelms with resoures
Katja Luther [Mon, 4 Dec 2017 14:03:20 +0000 (15:03 +0100)]
adapt all tests to updated test data
Katja Luther [Mon, 4 Dec 2017 13:44:09 +0000 (14:44 +0100)]
fix delete and tests of specimen with typedesignations and gathering events
Katja Luther [Mon, 4 Dec 2017 09:42:21 +0000 (10:42 +0100)]
titleCache of the taxon is not updated when swap synonym and accepted taxon
Katja Luther [Thu, 30 Nov 2017 10:52:46 +0000 (11:52 +0100)]
adapt uuidAndTitleCache services and dao methods to search for a pattern
Andreas Müller [Fri, 24 Nov 2017 16:36:09 +0000 (17:36 +0100)]
cleanup
Andreas Müller [Fri, 24 Nov 2017 16:35:43 +0000 (17:35 +0100)]
fix #7094 fix tests after removing whitespaces from nomenclatural titles of persons
Andreas Müller [Thu, 23 Nov 2017 21:26:54 +0000 (22:26 +0100)]
reset MediaUtils (was accidentally commited)
Andreas Müller [Thu, 23 Nov 2017 21:19:46 +0000 (22:19 +0100)]
ref #6965 remove space between initials and name in nomencl. person title
Andreas Müller [Thu, 23 Nov 2017 21:18:53 +0000 (22:18 +0100)]
ref #6965 add reference author handling and and reporting for ID duplicates
Andreas Kohlbecker [Thu, 23 Nov 2017 12:16:32 +0000 (13:16 +0100)]
avoiding NPE in SpecimenOrObservationBaseVoter in case originals is null
Andreas Kohlbecker [Wed, 22 Nov 2017 15:45:47 +0000 (16:45 +0100)]
Creating spring bean DataBaseTablePrinter responsible for all database printing tasks, CdmIntegrationTest only wraps around this bean now
Katja Luther [Wed, 22 Nov 2017 12:28:16 +0000 (13:28 +0100)]
fix delete of derivedUnits, derivationEvent needs to be deleted, add getUUIDAndTitleCache with pattern and limit
Andreas Müller [Tue, 21 Nov 2017 11:44:42 +0000 (12:44 +0100)]
ref #6965 fix compilation issue in ImportDeduplicationHelper
Andreas Müller [Tue, 21 Nov 2017 11:36:48 +0000 (12:36 +0100)]
ref #6258 add cascading for registration in TaxonName and TypeDesignationBase
Andreas Müller [Tue, 21 Nov 2017 11:28:04 +0000 (12:28 +0100)]
cleanup
Andreas Müller [Tue, 21 Nov 2017 11:27:52 +0000 (12:27 +0100)]
ref #6965 fix TropicosNameImportTest
Andreas Müller [Tue, 21 Nov 2017 09:42:44 +0000 (10:42 +0100)]
ref #6965 fix empty TimePeriod matching bug
Andreas Müller [Tue, 21 Nov 2017 09:41:54 +0000 (10:41 +0100)]
ref #6965 first version of Tropicos import
Andreas Müller [Tue, 21 Nov 2017 09:31:31 +0000 (10:31 +0100)]
cleanup
Andreas Müller [Tue, 21 Nov 2017 09:27:59 +0000 (10:27 +0100)]
ref #6965 rename static Name Identifier methods
Andreas Müller [Tue, 21 Nov 2017 09:25:22 +0000 (10:25 +0100)]
ref #6965 move CsvImportBase to "in" package
Katja Luther [Wed, 15 Nov 2017 08:57:37 +0000 (09:57 +0100)]
add level to titleCache of namedArea in uuidAndTitleCache search
Katja Luther [Tue, 14 Nov 2017 12:37:56 +0000 (13:37 +0100)]
add uuidAndTitleCache method to get uuidAndTitleCache of namedArea depending on vocabulary
Andreas Kohlbecker [Tue, 14 Nov 2017 11:31:23 +0000 (12:31 +0100)]
typos and whitespace
Andreas Kohlbecker [Tue, 14 Nov 2017 11:30:53 +0000 (12:30 +0100)]
fixing NPE in IdentifiableEntity.getExtensions()
Andreas Kohlbecker [Tue, 14 Nov 2017 11:30:11 +0000 (12:30 +0100)]
handing hibernate proxies
Andreas Müller [Sun, 12 Nov 2017 07:27:00 +0000 (08:27 +0100)]
move stream base classes from dwca to stream package (test package)
Andreas Müller [Sat, 11 Nov 2017 23:28:04 +0000 (00:28 +0100)]
cleanup
Andreas Müller [Sat, 11 Nov 2017 23:27:50 +0000 (00:27 +0100)]
move stream base classes from dwca to stream package
Andreas Müller [Sat, 11 Nov 2017 21:22:57 +0000 (22:22 +0100)]
remove reference deduplication as default from Excel import
Andreas Müller [Sat, 11 Nov 2017 21:22:16 +0000 (22:22 +0100)]
cleanup
Andreas Müller [Sat, 11 Nov 2017 21:20:22 +0000 (22:20 +0100)]
ref #7075 first running version for ImageExcelImport
Andreas Müller [Sat, 11 Nov 2017 21:18:01 +0000 (22:18 +0100)]
ref #7075 add slash dates to TimePeriodParser
Andreas Müller [Sun, 5 Nov 2017 17:55:16 +0000 (18:55 +0100)]
cleanup
jenkins [Wed, 8 Nov 2017 11:16:07 +0000 (12:16 +0100)]
Updating develop poms back to pre merge state
jenkins [Wed, 8 Nov 2017 11:16:07 +0000 (12:16 +0100)]
Merge branch 'master' into develop
jenkins [Wed, 8 Nov 2017 11:16:06 +0000 (12:16 +0100)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 8 Nov 2017 11:16:03 +0000 (12:16 +0100)]
Merge branch 'release/4.11.0'
jenkins [Wed, 8 Nov 2017 10:57:17 +0000 (11:57 +0100)]
updating poms for branch'release/4.11.0' with non-snapshot versions
jenkins [Wed, 8 Nov 2017 10:37:52 +0000 (11:37 +0100)]
updating poms for 4.12.0-SNAPSHOT development
Andreas Kohlbecker [Fri, 3 Nov 2017 15:15:56 +0000 (16:15 +0100)]
ref #7046 load by id method in service base class
Andreas Kohlbecker [Fri, 3 Nov 2017 15:14:44 +0000 (16:14 +0100)]
reducing log level
Andreas Müller [Fri, 3 Nov 2017 00:59:27 +0000 (01:59 +0100)]
cleanup
Andreas Müller [Thu, 2 Nov 2017 22:52:38 +0000 (23:52 +0100)]
cleanup and improved generics for commonservice findXXX methods
Andreas Müller [Mon, 30 Oct 2017 22:00:40 +0000 (23:00 +0100)]
ref #6606 changes in cdmlib for bogota specimen import
Andreas Müller [Fri, 27 Oct 2017 21:17:59 +0000 (23:17 +0200)]
fix handling of null feature in import
Andreas Müller [Fri, 27 Oct 2017 21:17:14 +0000 (23:17 +0200)]
some new methods for CdmPreferences
Andreas Müller [Fri, 27 Oct 2017 21:16:25 +0000 (23:16 +0200)]
try to fix NPE in TaxonNodeByRankAndNameComparator
Andreas Kohlbecker [Wed, 25 Oct 2017 14:10:24 +0000 (16:10 +0200)]
fix #6780 correctly checking for active transaction
Andreas Kohlbecker [Wed, 25 Oct 2017 14:07:25 +0000 (16:07 +0200)]
ref #7034 closing open database connections in DataSourceConfigurer
Andreas Kohlbecker [Tue, 24 Oct 2017 15:37:50 +0000 (17:37 +0200)]
Revert "fixing potential memory leak in ConversationHolder, releasing datasource"
this was a bad idea
This reverts commit
af2d2d3b380c58b4b823c0921f975d3abae9fdf4.
Andreas Kohlbecker [Tue, 24 Oct 2017 15:15:55 +0000 (17:15 +0200)]
fixing potential memory leak in ConversationHolder, releasing datasource
Andreas Müller [Mon, 23 Oct 2017 22:11:09 +0000 (00:11 +0200)]
minor
Andreas Kohlbecker [Mon, 23 Oct 2017 13:17:18 +0000 (15:17 +0200)]
avoiding excessive session log entries at INFO level
Andreas Kohlbecker [Mon, 23 Oct 2017 09:54:06 +0000 (11:54 +0200)]
ref #6867 public access to RunAsAuthenticator methods
Andreas Kohlbecker [Mon, 23 Oct 2017 09:51:24 +0000 (11:51 +0200)]
#7021 excluding also all created and updated fields
Andreas Müller [Sun, 22 Oct 2017 20:50:13 +0000 (22:50 +0200)]
ref #6903 preferences for vaadin
Andreas Müller [Sun, 22 Oct 2017 17:17:34 +0000 (19:17 +0200)]
remove model. as static prefix of predicate
* it is unclear why it was originally invented in such an inflexible way
Andreas Müller [Sun, 22 Oct 2017 17:15:46 +0000 (19:15 +0200)]
Some utils methods for preferences
Andreas Müller [Sun, 22 Oct 2017 15:51:30 +0000 (17:51 +0200)]
add uuid list as return type for CdmPreference.getValue
Andreas Müller [Fri, 20 Oct 2017 09:11:13 +0000 (11:11 +0200)]
cleanup
Andreas Müller [Fri, 20 Oct 2017 09:09:02 +0000 (11:09 +0200)]
ref #7028 added preference predicate in cdmlib, fix missing uuid
Andreas Kohlbecker [Fri, 20 Oct 2017 07:12:10 +0000 (09:12 +0200)]
cleaner CdmAuthority constructor
Andreas Müller [Fri, 20 Oct 2017 08:41:00 +0000 (10:41 +0200)]
ref #7028 added preference predicate in cdmlib