cdmlib.git
10 years agocode cosmetics
Andreas Kohlbecker [Wed, 29 Jan 2014 09:33:38 +0000 (09:33 +0000)]
code cosmetics

10 years agocomments towards refactoring IService.list()
Andreas Kohlbecker [Wed, 29 Jan 2014 09:33:28 +0000 (09:33 +0000)]
comments towards refactoring IService.list()

10 years agoadd stepName
Andreas Müller [Tue, 28 Jan 2014 16:42:04 +0000 (16:42 +0000)]
add stepName

10 years agominor
Andreas Müller [Tue, 28 Jan 2014 13:12:53 +0000 (13:12 +0000)]
minor

10 years agocorrecting documentation and adapting test - #3904 (EuroMed: Implement filtering...
Andreas Kohlbecker [Tue, 28 Jan 2014 13:06:29 +0000 (13:06 +0000)]
correcting documentation and adapting test -  #3904 (EuroMed: Implement filtering rules for Distributions)

10 years agoreintegrate branch patricia
p.kelbert [Tue, 28 Jan 2014 13:00:39 +0000 (13:00 +0000)]
reintegrate branch patricia

10 years agocorecting documentation, removing obsolete rule and adapting test accordingly - ...
Andreas Kohlbecker [Tue, 28 Jan 2014 11:35:37 +0000 (11:35 +0000)]
corecting documentation, removing obsolete rule and adapting test accordingly -  #3904 (EuroMed: Implement filtering rules for Distributions)

10 years agoimplementing test for #3904 (EuroMed: Implement filtering rules for Distributions...
Andreas Kohlbecker [Tue, 28 Jan 2014 09:51:37 +0000 (09:51 +0000)]
implementing test for #3904 (EuroMed: Implement filtering rules for Distributions) and a little bugfix

10 years agoperformance fix for TaxonController.getMedia() - no longer always loading all the...
Andreas Kohlbecker [Mon, 27 Jan 2014 11:11:03 +0000 (11:11 +0000)]
performance fix for TaxonController.getMedia() - no longer always loading all the taxon relations, speedup by 0,66

10 years agofixing #3974: NPE in MediaController.doGetMediaMetaData()
Andreas Kohlbecker [Mon, 27 Jan 2014 11:10:54 +0000 (11:10 +0000)]
fixing #3974: NPE in  MediaController.doGetMediaMetaData()

10 years agocomment
Andreas Kohlbecker [Mon, 27 Jan 2014 11:10:47 +0000 (11:10 +0000)]
comment

10 years agodocumentation on the TransmissionEngineDistribution REST service
Andreas Kohlbecker [Mon, 27 Jan 2014 11:10:40 +0000 (11:10 +0000)]
documentation on the TransmissionEngineDistribution REST service

10 years agodocumentation on the TransmissionEngineDistribution REST service
Andreas Kohlbecker [Mon, 27 Jan 2014 11:10:33 +0000 (11:10 +0000)]
documentation on the TransmissionEngineDistribution REST service

10 years agotry to fix ConcurrentModification Exception in removeNameRelationshipByDeleteConfig
Andreas Müller [Fri, 24 Jan 2014 15:57:20 +0000 (15:57 +0000)]
try to fix ConcurrentModification Exception in removeNameRelationshipByDeleteConfig

10 years agomaking boolean methods in TaggedText all Transient #3991
Andreas Müller [Fri, 24 Jan 2014 14:50:43 +0000 (14:50 +0000)]
making boolean methods in TaggedText all Transient  #3991

10 years agofixing hibernate search annotation
Andreas Kohlbecker [Mon, 20 Jan 2014 15:48:44 +0000 (15:48 +0000)]
fixing hibernate search annotation

10 years agoTODO comment
Andreas Kohlbecker [Sun, 19 Jan 2014 09:38:25 +0000 (09:38 +0000)]
TODO comment

10 years agofixing versions numbers, setting them to 3.3.1-SNAPSHOT
Andreas Kohlbecker [Thu, 16 Jan 2014 06:46:52 +0000 (06:46 +0000)]
fixing versions numbers, setting them to 3.3.1-SNAPSHOT

10 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Wed, 15 Jan 2014 17:18:06 +0000 (17:18 +0000)]
[maven-release-plugin] prepare for next development iteration

10 years ago[maven-release-plugin] prepare release cdmlib-parent-3.3
edit-jenkins [Wed, 15 Jan 2014 17:18:04 +0000 (17:18 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.3

10 years agoadapting method to new classification structure
Andreas Kohlbecker [Wed, 15 Jan 2014 16:44:45 +0000 (16:44 +0000)]
adapting method to new classification structure

10 years agoadapting method to new classification structure
Andreas Kohlbecker [Wed, 15 Jan 2014 16:03:04 +0000 (16:03 +0000)]
adapting method to new classification structure

10 years agoadapting method to new classification structure
Andreas Kohlbecker [Wed, 15 Jan 2014 15:39:13 +0000 (15:39 +0000)]
adapting method to new classification structure

10 years agoadapting method to new classification structure
Andreas Kohlbecker [Wed, 15 Jan 2014 14:26:03 +0000 (14:26 +0000)]
adapting method to new classification structure

10 years agoadapting method to new classification structure
Andreas Kohlbecker [Wed, 15 Jan 2014 13:21:26 +0000 (13:21 +0000)]
adapting method to new classification structure

10 years agofix stupid bug in SimpleSchemaUpdater
Andreas Müller [Wed, 15 Jan 2014 12:42:38 +0000 (12:42 +0000)]
fix stupid bug in SimpleSchemaUpdater

10 years agofixing problems related to new taxon node structure
Andreas Kohlbecker [Wed, 15 Jan 2014 11:54:27 +0000 (11:54 +0000)]
fixing problems related to new taxon node structure

10 years agohandling of maxId of TaxonNode for empty databases
Andreas Müller [Wed, 15 Jan 2014 11:18:29 +0000 (11:18 +0000)]
handling of maxId of TaxonNode for empty databases

10 years agoremove some TODOs
Andreas Müller [Wed, 15 Jan 2014 11:17:41 +0000 (11:17 +0000)]
remove some TODOs

10 years agoadding element to init strategy for classification children
Andreas Kohlbecker [Wed, 15 Jan 2014 10:32:07 +0000 (10:32 +0000)]
adding element to init strategy for classification children

10 years agodoc
Andreas Müller [Wed, 15 Jan 2014 00:06:05 +0000 (00:06 +0000)]
doc

10 years agoremove publish marker from synonyms #3883
Andreas Müller [Tue, 14 Jan 2014 21:08:18 +0000 (21:08 +0000)]
remove publish marker from synonyms   #3883

10 years agoremoved tissue as kindOfUnit
Andreas Müller [Tue, 14 Jan 2014 20:57:01 +0000 (20:57 +0000)]
removed tissue as kindOfUnit

10 years agoupdate vocabulary titleCaches, untested #3708
Andreas Müller [Tue, 14 Jan 2014 20:52:06 +0000 (20:52 +0000)]
update vocabulary titleCaches, untested  #3708

10 years agoremove uri from feature tree #3519
Andreas Müller [Tue, 14 Jan 2014 20:41:54 +0000 (20:41 +0000)]
remove uri from feature tree  #3519

10 years agoupdate test scripts for unknownData flag #2975
Andreas Müller [Tue, 14 Jan 2014 20:31:50 +0000 (20:31 +0000)]
update test scripts for unknownData flag #2975

10 years agoadd unknownData to structured descriptive data #2975
Andreas Müller [Tue, 14 Jan 2014 20:28:43 +0000 (20:28 +0000)]
add unknownData to structured descriptive data  #2975

10 years agoadd unknownData to structured descriptive data #2975
Andreas Müller [Tue, 14 Jan 2014 20:27:50 +0000 (20:27 +0000)]
add unknownData to structured descriptive data  #2975

10 years agofix boolean value bug for Postgres and maybe H2
Andreas Müller [Tue, 14 Jan 2014 20:13:34 +0000 (20:13 +0000)]
fix boolean value bug for Postgres and maybe H2

10 years agoschema update to 3.3.1
Andreas Müller [Tue, 14 Jan 2014 19:50:02 +0000 (19:50 +0000)]
schema update to 3.3.1

10 years agosynchronize test datastructure
Andreas Müller [Tue, 14 Jan 2014 18:50:19 +0000 (18:50 +0000)]
synchronize test datastructure

10 years agominor
Andreas Müller [Tue, 14 Jan 2014 18:36:45 +0000 (18:36 +0000)]
minor

10 years agofix taxon service search test
Andreas Müller [Tue, 14 Jan 2014 18:36:08 +0000 (18:36 +0000)]
fix taxon service search test

10 years agofix taxon service search test
Andreas Müller [Tue, 14 Jan 2014 18:35:15 +0000 (18:35 +0000)]
fix taxon service search test

10 years agofixing 2 tests for the new classification structure
Andreas Müller [Tue, 14 Jan 2014 18:19:50 +0000 (18:19 +0000)]
fixing 2 tests for the new classification structure

10 years agoFixing some test for new Classification structure in cdmlib-model
Andreas Müller [Tue, 14 Jan 2014 17:07:43 +0000 (17:07 +0000)]
Fixing some test for new Classification structure in cdmlib-model

10 years ago(no commit message)
Katja Luther [Tue, 14 Jan 2014 14:49:17 +0000 (14:49 +0000)]

10 years agorootNode adaption for classification
Katja Luther [Tue, 14 Jan 2014 14:47:25 +0000 (14:47 +0000)]
rootNode adaption for classification

10 years ago - made default constructor public to avoid an InstantiationException (see https...
Patric Plitzner [Tue, 14 Jan 2014 13:10:48 +0000 (13:10 +0000)]
 - made default constructor public to avoid an InstantiationException (see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception)

10 years ago#3948 first step, if a taxon is used in a polytomous key, the taxonNode will be delet...
Katja Luther [Tue, 14 Jan 2014 12:25:07 +0000 (12:25 +0000)]
#3948 first step, if a taxon is used in a polytomous key, the taxonNode will be deleted, but the taxon will not be removed.

10 years agoagain bugfix for DNA URLs
Andreas Müller [Tue, 14 Jan 2014 10:04:38 +0000 (10:04 +0000)]
again bugfix for DNA URLs

10 years agoNPE bugfix in Specimen import
Andreas Müller [Mon, 13 Jan 2014 16:48:29 +0000 (16:48 +0000)]
NPE bugfix in Specimen import

10 years agofix bug for getBoldUri
Andreas Müller [Mon, 13 Jan 2014 15:24:53 +0000 (15:24 +0000)]
fix bug for getBoldUri

10 years agorevert boolean to non ''. Still needs more work for PostgreSQL
Patric Plitzner [Mon, 13 Jan 2014 14:59:51 +0000 (14:59 +0000)]
revert boolean to non ''. Still needs more work for PostgreSQL

10 years agocamelCase issues #3682 (tested with old campanula database)
Patric Plitzner [Mon, 13 Jan 2014 14:58:41 +0000 (14:58 +0000)]
camelCase issues #3682 (tested with old campanula database)

10 years agoremove some javadoc
Andreas Müller [Mon, 13 Jan 2014 13:13:51 +0000 (13:13 +0000)]
remove some javadoc

10 years agoDatasource changes
Andreas Müller [Mon, 13 Jan 2014 13:04:35 +0000 (13:04 +0000)]
Datasource changes

10 years agomerge pom
Andreas Müller [Mon, 13 Jan 2014 09:19:58 +0000 (09:19 +0000)]
merge pom

10 years agochanges for update postgres databases
Katja Luther [Thu, 9 Jan 2014 16:03:08 +0000 (16:03 +0000)]
changes for update postgres databases

10 years agoremove alias for GatheringEvent Update
Katja Luther [Thu, 9 Jan 2014 14:34:59 +0000 (14:34 +0000)]
remove alias for GatheringEvent Update

10 years agoadd Case handling for update scripts #3682
Andreas Müller [Thu, 9 Jan 2014 13:25:01 +0000 (13:25 +0000)]
add Case handling for update scripts #3682

10 years agoadd Salvador markers to BM import
Andreas Müller [Tue, 7 Jan 2014 15:58:26 +0000 (15:58 +0000)]
add Salvador markers to BM import

10 years agoadded a test for removeTaxonBase in testChangeSynonymToRelatedTaxon()
Katja Luther [Mon, 6 Jan 2014 12:01:20 +0000 (12:01 +0000)]
added a test for removeTaxonBase in testChangeSynonymToRelatedTaxon()

10 years agoCdmUpdater H2 compatibel (still needs to be tested)
Andreas Müller [Fri, 27 Dec 2013 21:59:06 +0000 (21:59 +0000)]
CdmUpdater H2 compatibel (still needs to be tested)

10 years agoCdmUpdater H2 compatibel (still needs to be tested)
Andreas Müller [Fri, 27 Dec 2013 21:57:32 +0000 (21:57 +0000)]
CdmUpdater H2 compatibel (still needs to be tested)

10 years agoupdate javadoc and override
Andreas Müller [Thu, 19 Dec 2013 11:03:15 +0000 (11:03 +0000)]
update javadoc and override

10 years agoadd find(Class, id) to common service
Andreas Müller [Thu, 19 Dec 2013 11:01:55 +0000 (11:01 +0000)]
add find(Class, id) to common service

10 years agoremove test method call
Andreas Müller [Thu, 19 Dec 2013 10:45:56 +0000 (10:45 +0000)]
remove test method call

10 years agoBug fix for DnaSample record basis
Andreas Müller [Wed, 18 Dec 2013 10:43:56 +0000 (10:43 +0000)]
Bug fix for DnaSample record basis

10 years agominor changes (remove logging of missing classification)
Andreas Müller [Wed, 18 Dec 2013 00:21:02 +0000 (00:21 +0000)]
minor changes (remove logging of missing classification)

10 years agoimplementing third rule for #3904 (EuroMed: Implement filtering rules for Distributions)
Andreas Kohlbecker [Tue, 17 Dec 2013 19:12:36 +0000 (19:12 +0000)]
implementing third rule for #3904 (EuroMed: Implement filtering rules for Distributions)

10 years agofixing lazy init exception
Andreas Kohlbecker [Tue, 17 Dec 2013 17:39:56 +0000 (17:39 +0000)]
fixing lazy init exception

10 years agofixing init strategy
Andreas Kohlbecker [Mon, 16 Dec 2013 17:00:55 +0000 (17:00 +0000)]
fixing init strategy

10 years agoremoving @Override for compatibility with java 1.6
Andreas Kohlbecker [Mon, 16 Dec 2013 15:02:53 +0000 (15:02 +0000)]
removing @Override for compatibility with java 1.6

10 years agofixing return type of getParentLoger method in CdmDataSourceBase for java 1.7
Andreas Kohlbecker [Mon, 16 Dec 2013 14:23:08 +0000 (14:23 +0000)]
fixing return type of getParentLoger method in CdmDataSourceBase for java 1.7

10 years ago - fixed mvn compile error with using java.util.logging.Logger
Patric Plitzner [Mon, 16 Dec 2013 14:06:49 +0000 (14:06 +0000)]
 - fixed mvn compile error with using java.util.logging.Logger

10 years agoadd FullCoverageDataGenerator
Andreas Müller [Mon, 16 Dec 2013 13:36:14 +0000 (13:36 +0000)]
add FullCoverageDataGenerator

10 years agojavadoc corrections
Andreas Müller [Mon, 16 Dec 2013 13:35:18 +0000 (13:35 +0000)]
javadoc corrections

10 years agochange exception handling and add method to be compliant with Java 7.x and JDBC 4.1
Andreas Müller [Mon, 16 Dec 2013 13:34:29 +0000 (13:34 +0000)]
change exception handling and add method to be compliant with Java 7.x and JDBC 4.1

10 years agofix unhandled filePath for H2 databases
Andreas Müller [Mon, 16 Dec 2013 13:29:42 +0000 (13:29 +0000)]
fix unhandled filePath for H2 databases

10 years agominor
Andreas Müller [Mon, 16 Dec 2013 11:36:08 +0000 (11:36 +0000)]
minor

10 years ago - changed parameter of getFieldUnits to UUID
Patric Plitzner [Wed, 11 Dec 2013 10:44:37 +0000 (10:44 +0000)]
 - changed parameter of getFieldUnits to UUID

10 years agoenabling xsl for statistics also
Andreas Kohlbecker [Tue, 10 Dec 2013 15:25:58 +0000 (15:25 +0000)]
enabling xsl for statistics also

10 years ago - added method to OccurrenceService to retrieve all parent FieldUnits from a given...
Patric Plitzner [Tue, 10 Dec 2013 15:03:38 +0000 (15:03 +0000)]
 - added method to OccurrenceService to retrieve all parent FieldUnits from a given DerivedUnit

10 years agolet ICdmDataSource implement javax.sql.DataSource #3910
Andreas Müller [Fri, 6 Dec 2013 13:39:20 +0000 (13:39 +0000)]
let ICdmDataSource implement javax.sql.DataSource   #3910

10 years agoimplementing rule 2 and 3 for #3904 (EuroMed: Implement filtering rules for Distribut...
Andreas Kohlbecker [Fri, 6 Dec 2013 11:28:16 +0000 (11:28 +0000)]
implementing rule 2 and 3 for #3904 (EuroMed: Implement filtering rules for Distributions) - all existing test running successfully

10 years agodocumenting purose of class GenericRemoteTester
Andreas Kohlbecker [Fri, 6 Dec 2013 11:27:57 +0000 (11:27 +0000)]
documenting purose of class GenericRemoteTester

10 years agohandle not existing common names correct in DwcA-in
Andreas Müller [Thu, 5 Dec 2013 14:50:38 +0000 (14:50 +0000)]
handle not existing common names correct in DwcA-in

10 years ago#3877
Katja Luther [Thu, 5 Dec 2013 13:33:03 +0000 (13:33 +0000)]
#3877

10 years agominor
Katja Luther [Thu, 5 Dec 2013 13:03:47 +0000 (13:03 +0000)]
minor

10 years agonew factory methods
Andreas Müller [Wed, 4 Dec 2013 20:09:47 +0000 (20:09 +0000)]
new factory methods

10 years agoadd putter for locality
Andreas Müller [Wed, 4 Dec 2013 18:48:38 +0000 (18:48 +0000)]
add putter for locality

10 years agoadd "part" to sequence setter
Andreas Müller [Wed, 4 Dec 2013 18:41:13 +0000 (18:41 +0000)]
add "part" to sequence setter

10 years agoworking on multilanguage representations in REST services for DescriptionElements...
Andreas Kohlbecker [Wed, 4 Dec 2013 17:32:26 +0000 (17:32 +0000)]
working on multilanguage representations in REST services for DescriptionElements and StateData

10 years agoadding option to specify port
Andreas Kohlbecker [Wed, 4 Dec 2013 17:32:12 +0000 (17:32 +0000)]
adding option to specify port

10 years agoremove old TDWGArea class
Andreas Müller [Wed, 4 Dec 2013 17:21:43 +0000 (17:21 +0000)]
remove old TDWGArea class

10 years ago - added removeDescriptions() to IDescribable
Patric Plitzner [Wed, 4 Dec 2013 14:41:44 +0000 (14:41 +0000)]
 - added removeDescriptions() to IDescribable
 - added @Override

10 years agoadd convenients method for multiple elements
Andreas Müller [Tue, 3 Dec 2013 12:49:54 +0000 (12:49 +0000)]
add convenients method for multiple elements

10 years agoremove CopyOnWriteArrayList
Katja Luther [Tue, 3 Dec 2013 09:49:23 +0000 (09:49 +0000)]
remove CopyOnWriteArrayList

10 years agomove fields up
Andreas Müller [Mon, 2 Dec 2013 15:58:59 +0000 (15:58 +0000)]
move fields up