cdmlib.git
11 years agoremoving offending import
Andreas Kohlbecker [Thu, 11 Oct 2012 10:42:14 +0000 (10:42 +0000)]
removing offending import

11 years agofixing parent pom.xml
Andreas Kohlbecker [Thu, 11 Oct 2012 10:15:11 +0000 (10:15 +0000)]
fixing parent pom.xml

11 years agominor doc
Andreas Müller [Thu, 11 Oct 2012 09:48:10 +0000 (09:48 +0000)]
minor doc

11 years agofixing parent pom.xml
Andreas Kohlbecker [Thu, 11 Oct 2012 09:30:52 +0000 (09:30 +0000)]
fixing parent pom.xml

11 years agoremove imports
Andreas Müller [Thu, 11 Oct 2012 08:43:01 +0000 (08:43 +0000)]
remove imports

11 years agoreintegrating branch ikey-plus-import into trunk
Andreas Kohlbecker [Thu, 11 Oct 2012 08:14:08 +0000 (08:14 +0000)]
reintegrating branch ikey-plus-import into trunk

11 years agocorrect handling for NULL values in ResultSetProxy
Andreas Müller [Wed, 10 Oct 2012 18:11:13 +0000 (18:11 +0000)]
correct handling for NULL values in ResultSetProxy

11 years agofix NPE with abbrev == null in Rank (II)
Andreas Müller [Wed, 10 Oct 2012 10:27:24 +0000 (10:27 +0000)]
fix NPE with abbrev == null in Rank (II)

11 years agofix NPE with abbrev == null in Rank
Andreas Müller [Wed, 10 Oct 2012 10:24:04 +0000 (10:24 +0000)]
fix NPE with abbrev == null in Rank

11 years agoxsl file locations configurable
Andreas Kohlbecker [Tue, 9 Oct 2012 12:36:37 +0000 (12:36 +0000)]
xsl file locations configurable

11 years agointroducing DataSourceProperties for making xsl file locations configurable
Andreas Kohlbecker [Fri, 5 Oct 2012 15:57:32 +0000 (15:57 +0000)]
introducing DataSourceProperties for making xsl file locations configurable

11 years agoAM: removed useless assignment
Patric Plitzner [Fri, 5 Oct 2012 14:37:49 +0000 (14:37 +0000)]
AM: removed useless assignment

11 years agointroducing enum for Roles
Andreas Kohlbecker [Fri, 5 Oct 2012 13:10:54 +0000 (13:10 +0000)]
introducing enum for Roles

11 years agosecuring GroupService and GrantedAuthorityService, simple tests for UserService security
Andreas Kohlbecker [Fri, 5 Oct 2012 13:10:47 +0000 (13:10 +0000)]
securing GroupService and GrantedAuthorityService, simple tests for UserService security

11 years agoreplacing lucene-grouping classes by mvn dependency
Andreas Kohlbecker [Fri, 5 Oct 2012 12:00:31 +0000 (12:00 +0000)]
replacing lucene-grouping classes by mvn dependency

11 years agofixing minor bug
Andreas Kohlbecker [Fri, 5 Oct 2012 10:07:45 +0000 (10:07 +0000)]
fixing minor bug

11 years agofixing #2950 (Allow grouping of lucene (hibernate search) results) - max score included
Andreas Kohlbecker [Fri, 5 Oct 2012 08:59:26 +0000 (08:59 +0000)]
fixing #2950 (Allow grouping of lucene (hibernate search) results)  - max score included

11 years agosome more cleaning up
Andreas Kohlbecker [Fri, 5 Oct 2012 08:59:22 +0000 (08:59 +0000)]
some more cleaning up

11 years agoremoving deprecated methods
Andreas Kohlbecker [Fri, 5 Oct 2012 08:59:20 +0000 (08:59 +0000)]
removing deprecated methods

11 years agoalmost 100% fixing #2950 (Allow grouping of lucene (hibernate search) results) -...
Andreas Kohlbecker [Fri, 5 Oct 2012 08:59:16 +0000 (08:59 +0000)]
almost 100% fixing #2950 (Allow grouping of lucene (hibernate search) results) - only max score is not yet available

11 years agofirst implementation: existing tests all Ok, grouping does not yet really work, index...
Andreas Kohlbecker [Fri, 5 Oct 2012 08:59:11 +0000 (08:59 +0000)]
first implementation: existing tests all Ok, grouping does not yet really work, index changes needed

11 years agoadding lucene grouping module from http://svn.apache.org/repos/asf/lucene/dev/tags...
Andreas Kohlbecker [Fri, 5 Oct 2012 08:59:06 +0000 (08:59 +0000)]
adding lucene grouping module from svn.apache.org/repos/asf/lucene/dev/tags/lucene_solr_3_2/lucene/contrib/grouping/

11 years agoremove old comment
Cherian Mathew [Thu, 4 Oct 2012 14:25:25 +0000 (14:25 +0000)]
remove old comment

11 years agoadd authentication to IO
Andreas Müller [Thu, 4 Oct 2012 08:32:55 +0000 (08:32 +0000)]
add authentication to IO

11 years agoadd authentication to IO
Andreas Müller [Thu, 4 Oct 2012 08:31:44 +0000 (08:31 +0000)]
add authentication to IO

11 years agomove save for admin
Andreas Müller [Tue, 2 Oct 2012 09:30:40 +0000 (09:30 +0000)]
move save for admin

11 years agoadding authority to first user admin
Andreas Kohlbecker [Tue, 2 Oct 2012 09:29:07 +0000 (09:29 +0000)]
adding authority to first user admin

11 years agojavadoc
Andreas Müller [Tue, 2 Oct 2012 09:26:06 +0000 (09:26 +0000)]
javadoc

11 years agoremove imports
Andreas Müller [Tue, 2 Oct 2012 09:20:59 +0000 (09:20 +0000)]
remove imports

11 years agotoString for Collection
Andreas Müller [Mon, 1 Oct 2012 16:44:44 +0000 (16:44 +0000)]
toString for Collection

11 years agominor
Andreas Müller [Mon, 1 Oct 2012 16:43:54 +0000 (16:43 +0000)]
minor

11 years agonow really fixing #3119 (fulltext search: Entity always null whatever search)
Andreas Kohlbecker [Fri, 28 Sep 2012 15:59:14 +0000 (15:59 +0000)]
now really fixing #3119 (fulltext search: Entity always null whatever search)

11 years agonew enumeration CdmBaseTypes.java : Enumeration of all abstract CDM base types. Each...
Andreas Kohlbecker [Fri, 28 Sep 2012 15:59:07 +0000 (15:59 +0000)]
new enumeration CdmBaseTypes.java : Enumeration of all abstract CDM base types. Each provides a set of all sub types

11 years agolatest Dwca export changes
Andreas Müller [Fri, 28 Sep 2012 13:47:16 +0000 (13:47 +0000)]
latest Dwca export changes

11 years agoFix the highlighted text and the calculated score.
l.morris [Fri, 28 Sep 2012 12:59:59 +0000 (12:59 +0000)]
Fix the highlighted text and the calculated score.

11 years agofixing #3119: fulltext search: Entity always null whatever search + regression test
Andreas Kohlbecker [Fri, 28 Sep 2012 09:08:46 +0000 (09:08 +0000)]
fixing #3119: fulltext search: Entity always null whatever search + regression test

11 years agotidying up
l.morris [Thu, 27 Sep 2012 17:33:42 +0000 (17:33 +0000)]
tidying up

11 years agoAdded pages to vibrant-taxon.xsl
l.morris [Thu, 27 Sep 2012 17:17:15 +0000 (17:17 +0000)]
Added pages to vibrant-taxon.xsl

11 years agochanged matchMode to BEGINNING. 'LIKE' currently not working.
l.morris [Thu, 27 Sep 2012 16:54:04 +0000 (16:54 +0000)]
changed matchMode to BEGINNING. 'LIKE' currently not working.

11 years agoFixed presentation of score on results page.
l.morris [Thu, 27 Sep 2012 16:53:17 +0000 (16:53 +0000)]
Fixed presentation of score on results page.

11 years agoFixed broken link for source URL. Scratchpad taxons do not currently have a source...
l.morris [Thu, 27 Sep 2012 14:42:22 +0000 (14:42 +0000)]
Fixed broken link for source URL. Scratchpad taxons do not currently have a source URL so clicking the link just refreshes the current page.

11 years agofixing #3117 (fulltext search: score values missing in results) and supplying maxScore
Andreas Kohlbecker [Thu, 27 Sep 2012 11:44:27 +0000 (11:44 +0000)]
fixing  #3117 (fulltext search: score values missing in results) and supplying maxScore

11 years agofixing #3116 (fulltext search: always only one page of results)
Andreas Kohlbecker [Thu, 27 Sep 2012 11:10:35 +0000 (11:10 +0000)]
fixing #3116 (fulltext search: always only one page of results)

11 years agoRegression test for #3116 (fulltext search: always only one page of results)
Andreas Kohlbecker [Thu, 27 Sep 2012 11:10:31 +0000 (11:10 +0000)]
Regression test for #3116 (fulltext search: always only one page of results)

11 years agolucene upgraded to version 2.9.4
Andreas Kohlbecker [Thu, 27 Sep 2012 06:48:04 +0000 (06:48 +0000)]
lucene upgraded to version 2.9.4

11 years agocleaning up
Andreas Kohlbecker [Thu, 27 Sep 2012 05:56:05 +0000 (05:56 +0000)]
cleaning up

11 years agoDwca import update for references, synonyms with "parentNameUsage" and some minor...
Andreas Müller [Wed, 26 Sep 2012 17:18:27 +0000 (17:18 +0000)]
Dwca import update for references, synonyms with "parentNameUsage" and some minor stuff

11 years agoModified vibrant-taxon.xsl to display the results of the full text search.
l.morris [Wed, 26 Sep 2012 16:46:33 +0000 (16:46 +0000)]
Modified vibrant-taxon.xsl to display the results of the full text search.

11 years agoAdded a html page for calling the full text search.
l.morris [Wed, 26 Sep 2012 16:45:37 +0000 (16:45 +0000)]
Added a html page for calling the full text search.

11 years ago#3113 (hibernate search: wildcard query can cause BooleanQuery: maxClauseCount is...
Andreas Kohlbecker [Wed, 26 Sep 2012 16:05:12 +0000 (16:05 +0000)]
#3113 (hibernate search: wildcard query can cause BooleanQuery: maxClauseCount is set to 1024) fixed by upgrade to lucene 2.9 + minor fix

11 years agocomment
Andreas Kohlbecker [Wed, 26 Sep 2012 16:05:09 +0000 (16:05 +0000)]
comment

11 years agofixing NPE and test to reproduce #3113 (hibernate search: wildcard query can cause...
Andreas Kohlbecker [Wed, 26 Sep 2012 16:05:07 +0000 (16:05 +0000)]
fixing NPE and test to reproduce #3113 (hibernate search: wildcard query can cause BooleanQuery: maxClauseCount is set to 1024)

11 years agoupgrading to lucene 2.9 and fixing #3114 (fieldHighlightMap is empty with lucene...
Andreas Kohlbecker [Wed, 26 Sep 2012 16:05:03 +0000 (16:05 +0000)]
upgrading to lucene 2.9 and fixing #3114 (fieldHighlightMap is empty with lucene wildcard searches) - code needs cleanup

11 years agofixing minor bug in SearchResultHighligther and test implemented for #3114 (fieldHigh...
Andreas Kohlbecker [Wed, 26 Sep 2012 14:17:42 +0000 (14:17 +0000)]
fixing minor bug in SearchResultHighligther and test implemented for #3114 (fieldHighlightMap is empty with lucene wildcard searches)

11 years agoavoiding id unnecessary fields in the lucene index
Andreas Kohlbecker [Wed, 26 Sep 2012 14:17:38 +0000 (14:17 +0000)]
avoiding id unnecessary fields in the lucene index

11 years agoavoiding id duplication in lucene index, circumvents a bug in hibernate-search
Andreas Kohlbecker [Wed, 26 Sep 2012 08:21:47 +0000 (08:21 +0000)]
avoiding id duplication in lucene index, circumvents a bug in hibernate-search

11 years agoindex optimization and confirmed that there is nothing to fix for #3063 (hibernate...
Andreas Kohlbecker [Wed, 26 Sep 2012 07:47:47 +0000 (07:47 +0000)]
index optimization and confirmed that there is nothing to fix for  #3063 (hibernate search: CdmMassIndexer.purge() fails, it does not empty the index.)

11 years agofixing #3115 (search method : TaxonServiceImpl.findTaxonByDescriptionElementFullText...
Andreas Kohlbecker [Wed, 26 Sep 2012 07:12:00 +0000 (07:12 +0000)]
fixing #3115 (search method : TaxonServiceImpl.findTaxonByDescriptionElementFullText() is missing Distributions) + test for  #3063 (hibernate search: CdmMassIndexer.purge() fails, it does not empty the index.)

11 years agominor
Andreas Müller [Tue, 25 Sep 2012 22:25:36 +0000 (22:25 +0000)]
minor

11 years agouse SpecimenDescriptionCacheStrategy
Andreas Müller [Tue, 25 Sep 2012 22:22:37 +0000 (22:22 +0000)]
use SpecimenDescriptionCacheStrategy

11 years agoadd SpecimenDescriptionCacheStrategy
Andreas Müller [Tue, 25 Sep 2012 22:21:57 +0000 (22:21 +0000)]
add SpecimenDescriptionCacheStrategy

11 years agofixing full text search issues: areas not found, etc
Andreas Kohlbecker [Tue, 25 Sep 2012 16:34:16 +0000 (16:34 +0000)]
fixing full text search issues: areas not found, etc

11 years agoremoving obsolete auhtority ALL.ADMIN
Andreas Kohlbecker [Tue, 25 Sep 2012 16:34:12 +0000 (16:34 +0000)]
removing obsolete auhtority ALL.ADMIN

11 years agotuning off security relates logging noise
Andreas Kohlbecker [Tue, 25 Sep 2012 16:34:08 +0000 (16:34 +0000)]
tuning off security relates logging noise

11 years agosecuring UserService on method level - all tests successful
Andreas Kohlbecker [Tue, 25 Sep 2012 13:02:39 +0000 (13:02 +0000)]
securing UserService on method level - all tests successful

11 years agosimpler and more predictable persistence/query/MatchMode.java
Andreas Kohlbecker [Tue, 25 Sep 2012 13:02:36 +0000 (13:02 +0000)]
simpler and more predictable persistence/query/MatchMode.java

11 years agoimplement classification filter on DwcA export
Andreas Müller [Tue, 25 Sep 2012 09:39:36 +0000 (09:39 +0000)]
implement classification filter on DwcA export

11 years agocdm_ws_progress.js moved from dataportal to cdmlib-remote-webapp
Andreas Kohlbecker [Tue, 25 Sep 2012 08:08:51 +0000 (08:08 +0000)]
cdm_ws_progress.js moved from dataportal to cdmlib-remote-webapp

11 years agoupdating aspectj ant task to also use the java source code compliance level 1.6 ...
Andreas Kohlbecker [Mon, 24 Sep 2012 12:47:13 +0000 (12:47 +0000)]
updating aspectj ant task to also use the java source code compliance level 1.6 => avoids the 'must override a superclass method' erros for @Override on interface method implementations

11 years agofree text search: better querying for 'isNotNull' and code harmonization
Andreas Kohlbecker [Mon, 24 Sep 2012 11:41:45 +0000 (11:41 +0000)]
free text search: better querying for 'isNotNull' and code harmonization

11 years agorest service progress monitor refactored
Andreas Kohlbecker [Mon, 24 Sep 2012 11:41:38 +0000 (11:41 +0000)]
rest service progress monitor refactored

11 years agovery first version of some statistics classes
Andreas Müller [Fri, 21 Sep 2012 13:23:38 +0000 (13:23 +0000)]
very first version of some statistics classes

11 years agoREST controller methods for new full text searches
Andreas Kohlbecker [Thu, 20 Sep 2012 19:41:22 +0000 (19:41 +0000)]
REST controller methods for new full text searches

11 years agofixing bug and re-enabling test method
Andreas Kohlbecker [Thu, 20 Sep 2012 19:23:21 +0000 (19:23 +0000)]
fixing bug and re-enabling test method

11 years agoignoring failing test
Andreas Kohlbecker [Thu, 20 Sep 2012 16:59:27 +0000 (16:59 +0000)]
ignoring failing test

11 years agorefactoring a bit for clearer code
Andreas Kohlbecker [Thu, 20 Sep 2012 16:59:27 +0000 (16:59 +0000)]
refactoring a bit for clearer code

11 years agolucene union search aka multisearch implemented
Andreas Kohlbecker [Thu, 20 Sep 2012 16:59:26 +0000 (16:59 +0000)]
lucene union search aka multisearch implemented

11 years agoinitial multisearcher implementation (allows union like search on muliple indexes)
Andreas Kohlbecker [Thu, 20 Sep 2012 16:59:26 +0000 (16:59 +0000)]
initial multisearcher implementation (allows union like search on muliple indexes)

11 years agotest for TaxonService.findByFullText() successful
Andreas Kohlbecker [Thu, 20 Sep 2012 16:59:25 +0000 (16:59 +0000)]
test for TaxonService.findByFullText() successful

11 years agoa bit more cleaning up
Andreas Kohlbecker [Thu, 20 Sep 2012 16:59:25 +0000 (16:59 +0000)]
a bit more cleaning up

11 years agointroducing the QueryFactory for to modularize lucene query building
Andreas Kohlbecker [Thu, 20 Sep 2012 16:59:24 +0000 (16:59 +0000)]
introducing the QueryFactory for to modularize lucene query building

11 years agominor
Andreas Müller [Thu, 20 Sep 2012 14:56:15 +0000 (14:56 +0000)]
minor

11 years agodeprecate isNotEmpty and new isNotBlank method
Andreas Müller [Thu, 20 Sep 2012 14:55:38 +0000 (14:55 +0000)]
deprecate isNotEmpty and new isNotBlank method

11 years agotest commit
Andreas Kohlbecker [Thu, 20 Sep 2012 10:45:09 +0000 (10:45 +0000)]
test commit

11 years agogetSpecimenDescription for import base and some minor changes
Andreas Müller [Thu, 20 Sep 2012 09:55:53 +0000 (09:55 +0000)]
getSpecimenDescription for import base and some minor changes

11 years agoreverting erroneously commits r16027 to r16031
Andreas Kohlbecker [Wed, 19 Sep 2012 07:52:39 +0000 (07:52 +0000)]
reverting erroneously commits r16027 to r16031

11 years agoinitial working version of ikeyplus import
Andreas Kohlbecker [Tue, 18 Sep 2012 21:16:20 +0000 (21:16 +0000)]
initial working version of ikeyplus import

11 years agoinitial multisearcher implementation (allows union like search on muliple indexes)
Andreas Kohlbecker [Tue, 18 Sep 2012 21:16:00 +0000 (21:16 +0000)]
initial multisearcher implementation (allows union like search on muliple indexes)

11 years agotest for TaxonService.findByFullText() successful
Andreas Kohlbecker [Tue, 18 Sep 2012 21:15:54 +0000 (21:15 +0000)]
test for TaxonService.findByFullText() successful

11 years agoa bit more cleaning up
Andreas Kohlbecker [Tue, 18 Sep 2012 21:15:44 +0000 (21:15 +0000)]
a bit more cleaning up

11 years agointroducing the QueryFactory for to modularize lucene query building
Andreas Kohlbecker [Tue, 18 Sep 2012 21:15:38 +0000 (21:15 +0000)]
introducing the QueryFactory for to modularize lucene query building

11 years agomake BMTransformer not public
Andreas Müller [Mon, 17 Sep 2012 08:52:14 +0000 (08:52 +0000)]
make BMTransformer not public

11 years agoupdate logging for inInReferences in BM import
Andreas Müller [Mon, 17 Sep 2012 08:49:13 +0000 (08:49 +0000)]
update logging for inInReferences in BM import

11 years agoupdate for Campanula import
Andreas Müller [Thu, 13 Sep 2012 15:00:30 +0000 (15:00 +0000)]
update for Campanula import

11 years agoimplementing GrantedAuthorityService for #2990 (implement missing parts of Groups...
Andreas Kohlbecker [Thu, 13 Sep 2012 10:28:15 +0000 (10:28 +0000)]
implementing GrantedAuthorityService for #2990 (implement missing parts of Groups admin details view)

11 years agobugfix for finding eol agents converter
Andreas Müller [Wed, 12 Sep 2012 11:43:18 +0000 (11:43 +0000)]
bugfix for finding eol agents converter

11 years agoupdating generics and bugfix for finding eol agents converter
Andreas Müller [Wed, 12 Sep 2012 11:34:04 +0000 (11:34 +0000)]
updating generics and bugfix for finding eol agents converter

11 years agoadd EOL_Agent converter
Andreas Müller [Wed, 12 Sep 2012 10:40:14 +0000 (10:40 +0000)]
add EOL_Agent converter

11 years agoadd EOL_Agent converter
Andreas Müller [Wed, 12 Sep 2012 10:39:54 +0000 (10:39 +0000)]
add EOL_Agent converter

11 years agoSome bugfixes for the DwcA import
Andreas Müller [Wed, 12 Sep 2012 09:23:44 +0000 (09:23 +0000)]
Some bugfixes for the DwcA import