Andreas Müller [Mon, 14 Oct 2013 13:05:38 +0000 (13:05 +0000)]
minor
Andreas Müller [Mon, 14 Oct 2013 12:51:36 +0000 (12:51 +0000)]
fix problem with duplicates for annotations in Berlin Model import #3195
Andreas Müller [Mon, 14 Oct 2013 12:15:15 +0000 (12:15 +0000)]
minor
Andreas Müller [Mon, 14 Oct 2013 11:18:27 +0000 (11:18 +0000)]
remove duplicates from TaxonNode children
Andreas Müller [Mon, 14 Oct 2013 11:17:53 +0000 (11:17 +0000)]
minor changes for common names and occurrences in Berlin Model import
Andreas Müller [Fri, 11 Oct 2013 22:26:49 +0000 (22:26 +0000)]
minor
Andreas Müller [Fri, 11 Oct 2013 13:23:43 +0000 (13:23 +0000)]
use euroMed areas and some minor clean up; enable authentication for user import
Andreas Kohlbecker [Fri, 11 Oct 2013 13:02:34 +0000 (13:02 +0000)]
updating doumentation on CdmAuthority syntax - adding brackets []
Andreas Kohlbecker [Fri, 11 Oct 2013 13:02:33 +0000 (13:02 +0000)]
fixing #3786 (Taxon editor view is not enabled even if a user has sufficient permissions)
Andreas Müller [Fri, 11 Oct 2013 11:28:34 +0000 (11:28 +0000)]
minor
Andreas Kohlbecker [Fri, 11 Oct 2013 09:24:17 +0000 (09:24 +0000)]
making sure users to be authenticated are alays up to date
Andreas Kohlbecker [Fri, 11 Oct 2013 09:24:12 +0000 (09:24 +0000)]
updating documentation
Andreas Müller [Thu, 10 Oct 2013 22:34:32 +0000 (22:34 +0000)]
adapt BerlinModel import to new abbrev reference title, all done except for authorString deduplication
Andreas Müller [Thu, 10 Oct 2013 14:05:00 +0000 (14:05 +0000)]
Add Application Controller example
Andreas Müller [Thu, 10 Oct 2013 14:00:37 +0000 (14:00 +0000)]
Add Application Controller example
Andreas Müller [Wed, 9 Oct 2013 16:45:05 +0000 (16:45 +0000)]
handle infinite recursion in markup keys
Andreas Müller [Wed, 9 Oct 2013 16:39:35 +0000 (16:39 +0000)]
handle no parent last nodes
Andreas Müller [Wed, 9 Oct 2013 16:38:46 +0000 (16:38 +0000)]
handle mods:partName
Andreas Müller [Wed, 9 Oct 2013 16:37:32 +0000 (16:37 +0000)]
handle long common names
Andreas Müller [Wed, 9 Oct 2013 16:33:01 +0000 (16:33 +0000)]
handle infinite recursion for node numbering
Andreas Müller [Wed, 9 Oct 2013 14:40:09 +0000 (14:40 +0000)]
new factory method for TextData
Katja Luther [Wed, 9 Oct 2013 13:33:39 +0000 (13:33 +0000)]
merging delete functionality into trunk
Andreas Kohlbecker [Wed, 9 Oct 2013 12:31:43 +0000 (12:31 +0000)]
fixing initialization strategy for description elements
Andreas Müller [Tue, 8 Oct 2013 14:26:40 +0000 (14:26 +0000)]
handle pages in FlorML
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:49 +0000 (14:16 +0000)]
including all sub areas
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:49 +0000 (14:16 +0000)]
removing debug code line
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:48 +0000 (14:16 +0000)]
modified area parameter binding for taxon/search REST services
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:48 +0000 (14:16 +0000)]
REST end point to page all NamedAreas in use
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:47 +0000 (14:16 +0000)]
methods to list and page all NamedAreas in use
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:47 +0000 (14:16 +0000)]
removing dead method
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:47 +0000 (14:16 +0000)]
renaming web application
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:46 +0000 (14:16 +0000)]
typo
Andreas Kohlbecker [Mon, 7 Oct 2013 14:16:43 +0000 (14:16 +0000)]
TODO comment
Andreas Müller [Mon, 7 Oct 2013 10:13:03 +0000 (10:13 +0000)]
fix titleCache truncation size issue (e.g. #3774)
Patric Plitzner [Mon, 30 Sep 2013 15:13:28 +0000 (15:13 +0000)]
- some refactoring
Patric Plitzner [Mon, 30 Sep 2013 14:38:01 +0000 (14:38 +0000)]
- added ABCD paths for missing query params
Patric Plitzner [Mon, 30 Sep 2013 07:49:34 +0000 (07:49 +0000)]
- fixed NPE in BioCaseQueryGenerator
Patric Plitzner [Mon, 30 Sep 2013 07:29:33 +0000 (07:29 +0000)]
- added javadoc
Andreas Müller [Sat, 28 Sep 2013 01:05:52 +0000 (01:05 +0000)]
add FeatureNodeService test #3757
Andreas Müller [Sat, 28 Sep 2013 01:04:56 +0000 (01:04 +0000)]
handle missing featureTree for treeNode #3757
Andreas Müller [Fri, 27 Sep 2013 23:31:25 +0000 (23:31 +0000)]
added TaxonNode order to preferences #3773
Andreas Müller [Fri, 27 Sep 2013 23:26:57 +0000 (23:26 +0000)]
Clean up DescriptionBase (minor)
Andreas Müller [Fri, 27 Sep 2013 22:37:00 +0000 (22:37 +0000)]
correct handling of null abbrev label in SingleTermUpdater
Andreas Müller [Fri, 27 Sep 2013 17:48:00 +0000 (17:48 +0000)]
some bugfixes for the update script (merge r19034 into trunk)
Andreas Müller [Fri, 27 Sep 2013 17:39:52 +0000 (17:39 +0000)]
reordering and changing tests for OriginalSOurceType and make second non capital in MeasurementUnit.csv
Andreas Müller [Fri, 27 Sep 2013 17:38:03 +0000 (17:38 +0000)]
minor
Andreas Kohlbecker [Fri, 27 Sep 2013 13:34:19 +0000 (13:34 +0000)]
restoring old findTaxaAndNames controller methods
Patric Plitzner [Fri, 27 Sep 2013 12:45:30 +0000 (12:45 +0000)]
- query parameters are read from wizard page
- enhanced query's toString() method
Andreas Kohlbecker [Fri, 27 Sep 2013 09:26:13 +0000 (09:26 +0000)]
adding POST capabilities to rest service endpoint
Andreas Kohlbecker [Fri, 27 Sep 2013 09:26:10 +0000 (09:26 +0000)]
furher improvement to the TitleAndNameCacheAutoInitializer
Andreas Müller [Fri, 27 Sep 2013 09:10:01 +0000 (09:10 +0000)]
fix missing taxon.titleCache length ->800 in update script
Andreas Müller [Thu, 26 Sep 2013 16:38:16 +0000 (16:38 +0000)]
minor updates to updater
Andreas Müller [Thu, 26 Sep 2013 16:37:43 +0000 (16:37 +0000)]
preliminary fix for ICBN bug #3658
Andreas Müller [Thu, 26 Sep 2013 16:24:12 +0000 (16:24 +0000)]
some bugfixes for update script
Andreas Kohlbecker [Thu, 26 Sep 2013 15:45:49 +0000 (15:45 +0000)]
improving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoInitializer
Andreas Kohlbecker [Thu, 26 Sep 2013 15:45:44 +0000 (15:45 +0000)]
moving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao.initializer'
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:08 +0000 (12:50 +0000)]
refactoring MatchMode class
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:06 +0000 (12:50 +0000)]
todo comment regarding #2432 ([E+M][Portal] Implement search for multiple areas)
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:03 +0000 (12:50 +0000)]
using the recomendet requestPathAndQuery() for logging HTTP requests in controllers
Andreas Kohlbecker [Thu, 26 Sep 2013 12:50:01 +0000 (12:50 +0000)]
using the new search method in the controlers and fixing a bug with missing grouping_by field
Patric Plitzner [Thu, 26 Sep 2013 07:08:02 +0000 (07:08 +0000)]
- fixed BioCASE query XML
Andreas Müller [Wed, 25 Sep 2013 13:21:31 +0000 (13:21 +0000)]
reintegrate cdm-3.3 branch into trunk
Andreas Müller [Wed, 25 Sep 2013 13:14:14 +0000 (13:14 +0000)]
minor
Andreas Müller [Wed, 25 Sep 2013 13:13:25 +0000 (13:13 +0000)]
change version of parent pom -> 3.3.0
Andreas Müller [Wed, 25 Sep 2013 13:12:30 +0000 (13:12 +0000)]
change version ->3.3.0, move CdmMetaData, change schema version ->
20130924, fix TaxonServiceSearch test, update update-script
Patric Plitzner [Wed, 25 Sep 2013 11:38:31 +0000 (11:38 +0000)]
- added hashCode(), equals(), and toString() method to BioCaseQuery
Andreas Müller [Wed, 25 Sep 2013 11:37:12 +0000 (11:37 +0000)]
merge trunk into cdmlib v3.3 branch
Andreas Müller [Wed, 25 Sep 2013 11:34:05 +0000 (11:34 +0000)]
remove old TermsDataSet
Andreas Müller [Wed, 25 Sep 2013 11:28:14 +0000 (11:28 +0000)]
merge trunk into cdmlib v3.3 branch
Andreas Kohlbecker [Wed, 25 Sep 2013 11:15:36 +0000 (11:15 +0000)]
cleaning up
Andreas Kohlbecker [Wed, 25 Sep 2013 11:14:54 +0000 (11:14 +0000)]
adding missing type restriction for common names
Andreas Müller [Wed, 25 Sep 2013 10:44:36 +0000 (10:44 +0000)]
comment automated writing of test dataset
Andreas Müller [Wed, 25 Sep 2013 10:42:30 +0000 (10:42 +0000)]
minor
Andreas Kohlbecker [Wed, 25 Sep 2013 09:38:07 +0000 (09:38 +0000)]
fixing invalid test data
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:51 +0000 (09:07 +0000)]
commenting potential bug, see #3728 (DescriptionListPortalController.getDescriptionElementsForTaxon() seems to be using inapproptiate init strategy)
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:49 +0000 (09:07 +0000)]
documentation
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:46 +0000 (09:07 +0000)]
commenting out non working part of test, see #3730 (Taxon.removeTaxonRelation() raises error on update)
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:44 +0000 (09:07 +0000)]
all search tests running successful
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:40 +0000 (09:07 +0000)]
implemnting TaxonRelationshipClassBridge to also allow filtering misapplications by distribution, but run into a potential java bug which is really weired the solution i found to circumvent it is documented in TaxonServiceImpl.java
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:35 +0000 (09:07 +0000)]
TODO comment to the ClassInfoBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:29 +0000 (09:07 +0000)]
another TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:26 +0000 (09:07 +0000)]
another TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:24 +0000 (09:07 +0000)]
search by synonym also working with distrubution filter. TODO comments to the AcceptedTaxonBridge
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:19 +0000 (09:07 +0000)]
adding missing @Override
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:05 +0000 (09:07 +0000)]
changing test data a little bit
Andreas Kohlbecker [Wed, 25 Sep 2013 09:07:00 +0000 (09:07 +0000)]
distribution filter now working for taxon search by common names. commit includes results from research on best way to imnplement this
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:56 +0000 (09:06 +0000)]
refactoring for a lucene cross index search
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:52 +0000 (09:06 +0000)]
further tests show that cross index search is not working, commenting out these tests for refactoring
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:48 +0000 (09:06 +0000)]
turning off spell check index purging
Andreas Kohlbecker [Wed, 25 Sep 2013 09:06:43 +0000 (09:06 +0000)]
filtering of lucene searches by distributions basically implemented, needs to be improved though
Patric Plitzner [Thu, 19 Sep 2013 13:46:38 +0000 (13:46 +0000)]
- merged changes from campanula branch
- added BioCASE query support to cdmlib-ext
Andreas Müller [Thu, 19 Sep 2013 13:33:31 +0000 (13:33 +0000)]
fix ABCD import
Andreas Müller [Thu, 19 Sep 2013 13:31:34 +0000 (13:31 +0000)]
minor
Andreas Müller [Thu, 19 Sep 2013 13:23:44 +0000 (13:23 +0000)]
moving preferences into new package and some minor changes
Andreas Müller [Thu, 19 Sep 2013 11:36:35 +0000 (11:36 +0000)]
minor
Andreas Müller [Thu, 19 Sep 2013 11:34:01 +0000 (11:34 +0000)]
refactor Abcd import so that save can be handled separately, not yet complete
Andreas Müller [Thu, 19 Sep 2013 11:32:58 +0000 (11:32 +0000)]
change cdmApp type in ioConfig to interface #3726
Andreas Müller [Thu, 19 Sep 2013 11:31:34 +0000 (11:31 +0000)]
minor
Patric Plitzner [Wed, 18 Sep 2013 13:11:50 +0000 (13:11 +0000)]
merge-update from trunk
l.morris [Wed, 18 Sep 2013 12:43:39 +0000 (12:43 +0000)]
Added cichorieae to test XML output in PublisherTest