cdmlib.git
7 years agoref #6754 further adapt DwC-A export
Andreas Müller [Tue, 27 Jun 2017 11:47:38 +0000 (13:47 +0200)]
ref #6754 further adapt DwC-A export

7 years agoadapt excel import to the plant list files
Katja Luther [Tue, 27 Jun 2017 09:48:22 +0000 (11:48 +0200)]
adapt excel import to the plant list files

7 years agominor in excel import
Katja Luther [Tue, 27 Jun 2017 07:38:56 +0000 (09:38 +0200)]
minor in excel import

7 years agoref #6627 improve export result handling for cdm light
Andreas Müller [Mon, 26 Jun 2017 22:06:41 +0000 (00:06 +0200)]
ref #6627 improve export result handling for cdm light

7 years agocleanup
Andreas Müller [Mon, 26 Jun 2017 22:01:29 +0000 (00:01 +0200)]
cleanup

7 years agopreliminary ignore IPNI Test
Andreas Müller [Mon, 26 Jun 2017 21:56:46 +0000 (23:56 +0200)]
preliminary ignore IPNI Test

7 years agocleanup tests in io and service
Andreas Müller [Mon, 26 Jun 2017 21:55:06 +0000 (23:55 +0200)]
cleanup tests in io and service

7 years agofix failing tests
Andreas Müller [Mon, 26 Jun 2017 21:26:16 +0000 (23:26 +0200)]
fix failing tests

7 years agoref #6541 ref #6698 fix bug ImportResult is not set correctly
Andreas Müller [Mon, 26 Jun 2017 21:22:58 +0000 (23:22 +0200)]
ref #6541 ref #6698 fix bug ImportResult is not set correctly

7 years agocleanup
Andreas Müller [Mon, 26 Jun 2017 21:08:05 +0000 (23:08 +0200)]
cleanup

7 years agoadapt excel import to the plant list csv file
Katja Luther [Mon, 26 Jun 2017 14:09:39 +0000 (16:09 +0200)]
adapt excel import to the plant list csv file

7 years agoref #6754 adapt signature
Andreas Müller [Mon, 26 Jun 2017 08:45:32 +0000 (10:45 +0200)]
ref #6754 adapt signature

7 years agoref #6627 adapt handling of state in OutputModelResultProcessor
Andreas Müller [Mon, 26 Jun 2017 08:44:03 +0000 (10:44 +0200)]
ref #6627 adapt handling of state in OutputModelResultProcessor

7 years agoevaluate doSynonyms for taxon node children retrieval
Andreas Müller [Mon, 26 Jun 2017 08:34:17 +0000 (10:34 +0200)]
evaluate doSynonyms for taxon node children retrieval

7 years agoref #6627 adapt handling of state in OutputModelResultProcessor
Andreas Müller [Mon, 26 Jun 2017 08:33:21 +0000 (10:33 +0200)]
ref #6627 adapt handling of state in OutputModelResultProcessor

7 years agoref #6754 first part of refactoring DwcA export, also improved ExportResult / ImportR...
Andreas Müller [Mon, 26 Jun 2017 08:32:18 +0000 (10:32 +0200)]
ref #6754 first part of refactoring DwcA export, also improved ExportResult / ImportResult handling ref #6626 ref #6698

7 years agocleanup
Andreas Müller [Sun, 25 Jun 2017 23:06:48 +0000 (01:06 +0200)]
cleanup

7 years agoref 6519 add new error signature to ExportResult
Andreas Müller [Sun, 25 Jun 2017 08:16:57 +0000 (10:16 +0200)]
ref 6519 add new error signature to ExportResult

7 years agoref #6627 adapt error handling for cdm ligth export
Andreas Müller [Sun, 25 Jun 2017 08:15:03 +0000 (10:15 +0200)]
ref #6627 adapt error handling for cdm ligth export

7 years agocleanup
Andreas Müller [Sun, 25 Jun 2017 08:13:57 +0000 (10:13 +0200)]
cleanup

7 years agominor
Katja Luther [Sat, 24 Jun 2017 07:42:39 +0000 (09:42 +0200)]
minor

7 years agoreorganize publication date output in cdm light export
Katja Luther [Fri, 23 Jun 2017 11:57:57 +0000 (13:57 +0200)]
reorganize publication date output in cdm light export

7 years agoreorganize publication date output in cdm light export
Katja Luther [Fri, 23 Jun 2017 11:30:32 +0000 (13:30 +0200)]
reorganize publication date output in cdm light export

7 years agoupgrading the maven-bundle-plugin to 3.3.0
Andreas Kohlbecker [Fri, 23 Jun 2017 10:21:34 +0000 (12:21 +0200)]
upgrading the maven-bundle-plugin to 3.3.0

7 years agofix #6750 implementing DerivedUnitConverter with test
Andreas Kohlbecker [Fri, 23 Jun 2017 09:09:35 +0000 (11:09 +0200)]
fix #6750 implementing DerivedUnitConverter with test

7 years agoremove identifier from name table
Katja Luther [Thu, 22 Jun 2017 11:53:10 +0000 (13:53 +0200)]
remove identifier from name table

7 years agoadd identifier table
Katja Luther [Thu, 22 Jun 2017 11:52:02 +0000 (13:52 +0200)]
add identifier table

7 years agoref #6694 Add service method to add child features
Patrick Plitzner [Wed, 21 Jun 2017 07:57:30 +0000 (09:57 +0200)]
ref #6694 Add service method to add child features

 - also add parent of deleted feature node to DeleteResult

7 years agoref #6694 Fix moving of feature nodes
Patrick Plitzner [Tue, 20 Jun 2017 16:31:39 +0000 (18:31 +0200)]
ref #6694 Fix moving of feature nodes

7 years agoref #6694 Add service method to move FeatureNodes
Patrick Plitzner [Tue, 20 Jun 2017 14:43:12 +0000 (16:43 +0200)]
ref #6694 Add service method to move FeatureNodes

7 years agoref #6730: fix delete of media
Katja Luther [Tue, 20 Jun 2017 12:02:15 +0000 (14:02 +0200)]
ref #6730: fix delete of media

7 years agocdmLight export configurator: configure whether result is a zip file or not
Katja Luther [Tue, 20 Jun 2017 07:15:08 +0000 (09:15 +0200)]
cdmLight export configurator: configure whether result is a zip file or not

7 years agosmaller changes in specimen import
Katja Luther [Mon, 19 Jun 2017 13:24:01 +0000 (15:24 +0200)]
smaller changes in specimen import

7 years agosmaller changes in specimen import and excel import
Katja Luther [Mon, 19 Jun 2017 13:23:20 +0000 (15:23 +0200)]
smaller changes in specimen import and excel import

7 years agooutputmodel -> cdmLight
Katja Luther [Mon, 19 Jun 2017 12:41:57 +0000 (14:41 +0200)]
outputmodel -> cdmLight

7 years agorename outputModel to cdmLight
Katja Luther [Mon, 19 Jun 2017 12:06:45 +0000 (14:06 +0200)]
rename outputModel to cdmLight

7 years agocdm light: add collation
Katja Luther [Mon, 19 Jun 2017 10:14:23 +0000 (12:14 +0200)]
cdm light: add collation

7 years agocsv light export: smaller changes in scientificName: year published and volume for...
Katja Luther [Mon, 19 Jun 2017 08:04:04 +0000 (10:04 +0200)]
csv light export: smaller changes in scientificName: year published and volume for booksections

7 years agocsv light export: smaller changes in specimen.locality and reference.shortCitation
Katja Luther [Mon, 19 Jun 2017 07:49:42 +0000 (09:49 +0200)]
csv light export: smaller changes in specimen.locality and reference.shortCitation

7 years agoref #6730: minor
Katja Luther [Thu, 15 Jun 2017 12:00:45 +0000 (14:00 +0200)]
ref #6730: minor

7 years agoref #6730: first quick fix, to avoid deleting media referenced somewhere else.
Katja Luther [Thu, 15 Jun 2017 11:51:42 +0000 (13:51 +0200)]
ref #6730: first quick fix, to avoid deleting media referenced somewhere else.

7 years agoref #6627 add error handling to CDM light export (II)
Andreas Müller [Fri, 16 Jun 2017 10:40:10 +0000 (12:40 +0200)]
ref #6627 add error handling to CDM light export (II)

7 years agoref #6627 add error handling to CDM light export
Andreas Müller [Fri, 16 Jun 2017 09:43:07 +0000 (11:43 +0200)]
ref #6627 add error handling to CDM light export

7 years agoref #6645 logging missing wms layer mappings
Andreas Kohlbecker [Fri, 16 Jun 2017 08:44:54 +0000 (10:44 +0200)]
ref #6645 logging missing wms layer mappings

7 years agotypo
Andreas Kohlbecker [Fri, 16 Jun 2017 08:24:35 +0000 (10:24 +0200)]
typo

7 years agoref #6645 logging missing wms alyer mappings
Andreas Kohlbecker [Fri, 16 Jun 2017 08:23:56 +0000 (10:23 +0200)]
ref #6645 logging missing wms alyer mappings

7 years agoref #6627 fix Taxon_FK Problem in OutputModelClassificationExport for SimpleSpecimen
Andreas Müller [Fri, 16 Jun 2017 07:54:13 +0000 (09:54 +0200)]
ref #6627 fix Taxon_FK Problem in OutputModelClassificationExport for SimpleSpecimen

7 years agocleanup DwCA export
Andreas Müller [Thu, 15 Jun 2017 21:59:34 +0000 (23:59 +0200)]
cleanup DwCA export

7 years agocleanup
Andreas Müller [Thu, 15 Jun 2017 21:37:42 +0000 (23:37 +0200)]
cleanup

7 years agofix #6717 rename taxon name indexes
Andreas Müller [Thu, 15 Jun 2017 21:27:01 +0000 (23:27 +0200)]
fix #6717 rename taxon name indexes

7 years agoremove ignore from IpniServiceTest
Andreas Müller [Thu, 15 Jun 2017 14:49:06 +0000 (16:49 +0200)]
remove ignore from IpniServiceTest

7 years agominor
Andreas Müller [Thu, 15 Jun 2017 14:47:05 +0000 (16:47 +0200)]
minor

7 years agominor
Andreas Müller [Thu, 15 Jun 2017 14:09:35 +0000 (16:09 +0200)]
minor

7 years agoref #6535 fix updated test H2 in cdmlib
Andreas Müller [Thu, 15 Jun 2017 14:09:23 +0000 (16:09 +0200)]
ref #6535 fix updated test H2 in cdmlib

7 years agoref #6661 remove brackets from initials updater
Andreas Müller [Wed, 14 Jun 2017 20:23:10 +0000 (22:23 +0200)]
ref #6661 remove brackets from initials updater

7 years agoignore IPNI preliminary
Andreas Müller [Wed, 14 Jun 2017 14:07:09 +0000 (16:07 +0200)]
ignore IPNI preliminary

7 years agoref #6725 fix set(null) for kindOfUnit, Sex and LifeStage in DU facade
Andreas Müller [Wed, 14 Jun 2017 13:47:39 +0000 (15:47 +0200)]
ref #6725 fix set(null) for kindOfUnit, Sex and LifeStage in DU facade

7 years agofix #6725 correct handling and test for kindOfUnit handling in facade
Andreas Müller [Wed, 14 Jun 2017 11:21:35 +0000 (13:21 +0200)]
fix #6725 correct handling and test for kindOfUnit handling in facade

7 years agooutputmodel add taxonFK to specimen facts table
Katja Luther [Wed, 14 Jun 2017 07:29:46 +0000 (09:29 +0200)]
outputmodel add taxonFK to specimen facts table

7 years agofix NPE in WebPage cache strategy
Andreas Müller [Tue, 13 Jun 2017 10:41:31 +0000 (12:41 +0200)]
fix NPE in WebPage cache strategy

7 years agoignore IPNI preliminary
Andreas Müller [Tue, 13 Jun 2017 09:53:13 +0000 (11:53 +0200)]
ignore IPNI preliminary

7 years agoref #6722 implement life-form in derived unit facade
Andreas Müller [Tue, 13 Jun 2017 09:36:15 +0000 (11:36 +0200)]
ref #6722 implement life-form in derived unit facade

7 years agoref #6368 remove commented all TaxonName subclasses completely
Andreas Müller [Fri, 9 Jun 2017 08:56:49 +0000 (10:56 +0200)]
ref #6368 remove commented all TaxonName subclasses completely

7 years agoref #6719 DerivedUnitFacadeCacheStrategy can skip fieldUnits
Andreas Kohlbecker [Tue, 13 Jun 2017 06:37:59 +0000 (08:37 +0200)]
ref #6719 DerivedUnitFacadeCacheStrategy can skip fieldUnits

7 years agooutputmodel reference title for books
Katja Luther [Tue, 13 Jun 2017 07:08:01 +0000 (09:08 +0200)]
outputmodel reference title for books

7 years agofix specimen fact export
Katja Luther [Mon, 12 Jun 2017 12:53:16 +0000 (14:53 +0200)]
fix specimen fact export

7 years agominor
Katja Luther [Mon, 12 Jun 2017 08:26:35 +0000 (10:26 +0200)]
minor

7 years agochanges for outputmodel: encoding, shortCitation
Katja Luther [Mon, 12 Jun 2017 08:02:45 +0000 (10:02 +0200)]
changes for outputmodel: encoding, shortCitation

7 years agoref #6527: fix isDeletable method for media
Katja Luther [Fri, 9 Jun 2017 14:18:37 +0000 (16:18 +0200)]
ref  #6527: fix isDeletable method for media

7 years agooutputmodel export specimen facts
Katja Luther [Fri, 9 Jun 2017 12:21:36 +0000 (14:21 +0200)]
outputmodel export specimen facts

7 years agominor in Outputmodelexport (common names and distributions)
Katja Luther [Fri, 9 Jun 2017 11:35:24 +0000 (13:35 +0200)]
minor in Outputmodelexport (common names and distributions)

7 years agosmall fixes in sortindex updater
Katja Luther [Fri, 9 Jun 2017 09:54:03 +0000 (11:54 +0200)]
small fixes in sortindex updater

7 years agochanges in excelImport base
Katja Luther [Fri, 9 Jun 2017 09:53:08 +0000 (11:53 +0200)]
changes in excelImport base

7 years agochanges in TaxonExcelImport
Katja Luther [Fri, 9 Jun 2017 09:52:34 +0000 (11:52 +0200)]
changes in TaxonExcelImport

7 years agochanges in outputmodel
Katja Luther [Fri, 9 Jun 2017 09:51:46 +0000 (11:51 +0200)]
changes in outputmodel

7 years agofix #6656 autonym hybrid parsing with parseReference
Andreas Müller [Thu, 8 Jun 2017 11:38:56 +0000 (13:38 +0200)]
fix #6656 autonym hybrid parsing with parseReference

7 years agoref #6535 fix calls to version number from other places
Andreas Müller [Thu, 8 Jun 2017 11:15:29 +0000 (13:15 +0200)]
ref #6535 fix calls to version number from other places

7 years agofix #6502 reloading supplied term in service to avoid LIE
Andreas Kohlbecker [Thu, 8 Jun 2017 07:30:50 +0000 (09:30 +0200)]
fix #6502 reloading supplied term in service to avoid LIE

7 years agominor
Andreas Müller [Thu, 8 Jun 2017 06:35:02 +0000 (08:35 +0200)]
minor

7 years agoref #3734 remove ITermUpdaterStep.java and ITermUpdater
Andreas Müller [Thu, 8 Jun 2017 06:31:57 +0000 (08:31 +0200)]
ref #3734 remove ITermUpdaterStep.java and ITermUpdater

7 years agominor
Andreas Müller [Wed, 7 Jun 2017 10:35:24 +0000 (12:35 +0200)]
minor

7 years agoref #6535 fix strange bug in SQL that reads all records from CdmMetaData for property...
Andreas Müller [Wed, 7 Jun 2017 10:30:15 +0000 (12:30 +0200)]
ref #6535 fix strange bug in SQL that reads all records from CdmMetaData for propertyname = 0

7 years agofix compile error in common service
Andreas Müller [Wed, 7 Jun 2017 09:48:57 +0000 (11:48 +0200)]
fix compile error in common service

7 years agoref #6535 fix update script for renaming CdmMetaData.propertyName and remove old...
Andreas Müller [Wed, 7 Jun 2017 08:28:02 +0000 (10:28 +0200)]
ref #6535 fix update script for renaming CdmMetaData.propertyName and remove old column

7 years agoadd check for existence of merge objects
Katja Luther [Wed, 7 Jun 2017 07:40:49 +0000 (09:40 +0200)]
add check for existence of merge objects

7 years agoref #6695, ref #5302 reverting commit 6c3443469
Andreas Kohlbecker [Tue, 6 Jun 2017 10:52:57 +0000 (12:52 +0200)]
ref #6695, ref #5302 reverting commit 6c3443469

7 years agoadding missing delete method to CommonServiceImpl
Andreas Kohlbecker [Tue, 6 Jun 2017 09:00:05 +0000 (11:00 +0200)]
adding missing delete method to CommonServiceImpl

7 years agoref #6169 adding getService() method to CdmRepository
Andreas Kohlbecker [Tue, 6 Jun 2017 08:58:55 +0000 (10:58 +0200)]
ref #6169 adding getService() method to CdmRepository

7 years agoref #6661 some final updates for addInitials to person (length = 80 + handle ' in...
Andreas Müller [Tue, 6 Jun 2017 00:10:05 +0000 (02:10 +0200)]
ref #6661 some final updates for addInitials to person (length = 80 + handle ' in updatescript)

7 years agocleanup
Andreas Müller [Mon, 5 Jun 2017 19:05:22 +0000 (21:05 +0200)]
cleanup

7 years agofix hibernate search index path issue for remote-webapp tests
Andreas Müller [Mon, 5 Jun 2017 19:05:06 +0000 (21:05 +0200)]
fix hibernate search index path issue for remote-webapp tests

7 years agominor changes to TcsRdf import
Andreas Müller [Mon, 5 Jun 2017 18:26:05 +0000 (20:26 +0200)]
minor changes to TcsRdf import

7 years agoref #5817 update test data for rename RelationshipTermBase_inverseRepresentation
Andreas Müller [Mon, 5 Jun 2017 17:44:18 +0000 (19:44 +0200)]
ref #5817 update test data for rename RelationshipTermBase_inverseRepresentation

7 years agoupdate remote-webapp test H2 DB and some minor changes
Andreas Müller [Mon, 5 Jun 2017 16:54:54 +0000 (18:54 +0200)]
update remote-webapp test H2 DB  and some minor changes

7 years agoref #6258, #6535, #3734 some updates to CdmUpdater after checking against H2
Andreas Müller [Mon, 5 Jun 2017 16:35:55 +0000 (18:35 +0200)]
ref #6258, #6535, #3734  some updates to CdmUpdater after checking against H2

7 years agofix #5149 remove UNIQUE index on Sequence_Reference.citations_id column
Andreas Müller [Mon, 5 Jun 2017 15:00:57 +0000 (17:00 +0200)]
fix #5149 remove UNIQUE index on Sequence_Reference.citations_id column

7 years agofix #6226 delete orphaned keys and key statements
Andreas Müller [Mon, 5 Jun 2017 14:51:06 +0000 (16:51 +0200)]
fix #6226 delete orphaned keys and key statements

7 years agofix #5817 rename RelationshipTermBase_inverseRepresentation
Andreas Müller [Mon, 5 Jun 2017 13:28:38 +0000 (15:28 +0200)]
fix #5817 rename RelationshipTermBase_inverseRepresentation

7 years agofix #6340 update incorrect 'invalid' nomenclatural states
Andreas Müller [Mon, 5 Jun 2017 13:07:33 +0000 (15:07 +0200)]
fix #6340 update incorrect 'invalid' nomenclatural states

7 years agofix #6472 add key as target for IntextReference
Andreas Müller [Mon, 5 Jun 2017 11:10:12 +0000 (13:10 +0200)]
fix #6472 add key as target for IntextReference