cdmlib.git
12 years agocomments for method getParentLogger
Cherian Mathew [Fri, 15 Jun 2012 10:18:29 +0000 (10:18 +0000)]
comments for method getParentLogger

12 years agocomment for methods get/setObject
Cherian Mathew [Fri, 15 Jun 2012 10:18:09 +0000 (10:18 +0000)]
comment for methods get/setObject

12 years agoremoved @Override since it is incompatible with Java 6
Cherian Mathew [Fri, 15 Jun 2012 10:17:14 +0000 (10:17 +0000)]
removed @Override since it is incompatible with Java 6

12 years agoremoved @Override since it is incompatible with Java 7
Cherian Mathew [Fri, 15 Jun 2012 10:13:29 +0000 (10:13 +0000)]
removed @Override since it is incompatible with Java 7

12 years agoadd 1 method to be compliant with Java 7
Cherian Mathew [Fri, 15 Jun 2012 09:46:22 +0000 (09:46 +0000)]
add 1 method to be compliant with Java 7

12 years agoCorrected mistake in END wildcard option
Cherian Mathew [Fri, 15 Jun 2012 09:41:46 +0000 (09:41 +0000)]
Corrected mistake in END wildcard option

12 years agobugfixes in security interceptor
Katja Luther [Fri, 15 Jun 2012 09:40:00 +0000 (09:40 +0000)]
bugfixes in security interceptor

12 years agoadd the cascading from TaxonDescription to its taxon again
Katja Luther [Fri, 15 Jun 2012 09:39:09 +0000 (09:39 +0000)]
add the cascading from TaxonDescription to its taxon again

12 years ago(no commit message)
Katja Luther [Fri, 15 Jun 2012 09:37:46 +0000 (09:37 +0000)]

12 years agoadd 2 methods to ResultSetProxy to be compliant with Java 7
Cherian Mathew [Fri, 15 Jun 2012 09:30:05 +0000 (09:30 +0000)]
add 2 methods to ResultSetProxy to be compliant with Java 7

12 years agoadding debug logging
Andreas Kohlbecker [Thu, 14 Jun 2012 11:44:45 +0000 (11:44 +0000)]
adding debug logging

12 years agomake update title cache writable
Andreas Müller [Thu, 14 Jun 2012 11:15:40 +0000 (11:15 +0000)]
make update title cache writable

12 years agomake update title cache writable
Andreas Müller [Thu, 14 Jun 2012 11:12:54 +0000 (11:12 +0000)]
make update title cache writable

12 years agominor doc
Andreas Müller [Thu, 14 Jun 2012 10:10:24 +0000 (10:10 +0000)]
minor doc

12 years agominor
Andreas Müller [Thu, 14 Jun 2012 09:46:19 +0000 (09:46 +0000)]
minor

12 years agouseSourceRefAsSec for Dwc-A in
Andreas Müller [Wed, 13 Jun 2012 15:04:21 +0000 (15:04 +0000)]
useSourceRefAsSec for Dwc-A in

12 years agorefactor markup import, separate classes
Andreas Müller [Wed, 13 Jun 2012 15:03:32 +0000 (15:03 +0000)]
refactor markup import, separate classes

12 years agorechanged the pom
Katja Luther [Wed, 13 Jun 2012 14:23:43 +0000 (14:23 +0000)]
rechanged the pom

12 years ago(no commit message)
Katja Luther [Wed, 13 Jun 2012 13:51:49 +0000 (13:51 +0000)]

12 years agofix for NPE in TaxonNodeByNameComparator, #2912
Andreas Müller [Tue, 12 Jun 2012 15:06:19 +0000 (15:06 +0000)]
fix for NPE in TaxonNodeByNameComparator, #2912

12 years agomake source reference title configurable
Andreas Müller [Mon, 11 Jun 2012 09:54:30 +0000 (09:54 +0000)]
make source reference title configurable

12 years agofixing NPE in Dwc-A import
Andreas Müller [Mon, 11 Jun 2012 08:53:04 +0000 (08:53 +0000)]
fixing NPE in Dwc-A import

12 years agominor debugging
Andreas Müller [Mon, 11 Jun 2012 08:44:03 +0000 (08:44 +0000)]
minor debugging

12 years agochanging server ip to server name in pom
Andreas Kohlbecker [Mon, 11 Jun 2012 07:51:33 +0000 (07:51 +0000)]
changing server ip to server name in pom

12 years agominor
Andreas Müller [Fri, 8 Jun 2012 11:31:28 +0000 (11:31 +0000)]
minor

12 years agobugfix for wrong http anchor replacement
Andreas Müller [Thu, 7 Jun 2012 17:11:46 +0000 (17:11 +0000)]
bugfix for wrong http anchor replacement

12 years agofixing minor bug
Andreas Kohlbecker [Thu, 7 Jun 2012 14:11:39 +0000 (14:11 +0000)]
fixing minor bug

12 years agofixing test data
Andreas Kohlbecker [Thu, 7 Jun 2012 13:54:09 +0000 (13:54 +0000)]
fixing test data

12 years agoremove commented code
Andreas Müller [Thu, 7 Jun 2012 10:14:01 +0000 (10:14 +0000)]
remove commented code

12 years agominor
Andreas Müller [Thu, 7 Jun 2012 10:08:54 +0000 (10:08 +0000)]
minor

12 years agofindByDescriptionElementFullText implemented an hibernate search related tests fixed
Andreas Kohlbecker [Thu, 7 Jun 2012 09:59:34 +0000 (09:59 +0000)]
findByDescriptionElementFullText implemented an hibernate search related tests fixed

12 years agoObjectChange mapper depending on input class
Andreas Müller [Thu, 7 Jun 2012 09:30:50 +0000 (09:30 +0000)]
ObjectChange mapper depending on input class

12 years agoadd additional features for EM to BM import
Andreas Müller [Thu, 7 Jun 2012 09:29:43 +0000 (09:29 +0000)]
add additional features for EM to BM import

12 years agobugfix for features with missing uuid in BM import
Andreas Müller [Thu, 7 Jun 2012 09:20:10 +0000 (09:20 +0000)]
bugfix for features with missing uuid in BM import

12 years agofixed uuid for E+M maps feature
Andreas Müller [Wed, 6 Jun 2012 13:24:55 +0000 (13:24 +0000)]
fixed uuid for E+M maps feature

12 years agoSecurityInterceptor added
Katja Luther [Wed, 6 Jun 2012 11:30:37 +0000 (11:30 +0000)]
SecurityInterceptor added

12 years agohandle links to maps as facts in BM correctly during export to CDM
Andreas Müller [Wed, 6 Jun 2012 11:20:52 +0000 (11:20 +0000)]
handle links to maps as facts in BM correctly during export to CDM

12 years agoAdding PermissionEvaluator and helper classes
Katja Luther [Wed, 6 Jun 2012 11:16:42 +0000 (11:16 +0000)]
Adding PermissionEvaluator and helper classes

12 years agobugfix for missing facts in BM import and refactoring in BM facts import
Andreas Müller [Mon, 4 Jun 2012 13:36:51 +0000 (13:36 +0000)]
bugfix for missing facts in BM import and refactoring in BM facts import

12 years agoimplement sublusus and some remaining issues from taxon status change for PESI export
Andreas Müller [Fri, 1 Jun 2012 16:00:36 +0000 (16:00 +0000)]
implement sublusus and some remaining issues from taxon status change for PESI export

12 years agobugfix for problems with emCommonName import unmatched areas
Andreas Müller [Fri, 1 Jun 2012 12:32:33 +0000 (12:32 +0000)]
bugfix for problems with emCommonName import unmatched areas

12 years agoimplement alternative rank labels for BM, #2811
Andreas Müller [Fri, 1 Jun 2012 11:43:23 +0000 (11:43 +0000)]
implement alternative rank labels for BM, #2811

12 years agomake some uuids public
Andreas Müller [Fri, 1 Jun 2012 11:24:05 +0000 (11:24 +0000)]
make some uuids public

12 years agofix tests for PolytomousKeyNodes, #2892
Andreas Müller [Wed, 30 May 2012 13:24:25 +0000 (13:24 +0000)]
fix tests for PolytomousKeyNodes, #2892

12 years agobugfix for PolytomousKeyNode numbering, #2892
Andreas Müller [Wed, 30 May 2012 12:16:33 +0000 (12:16 +0000)]
bugfix for PolytomousKeyNode numbering, #2892

12 years agoupdate Markup import for F. Guianas
Andreas Müller [Wed, 30 May 2012 11:46:47 +0000 (11:46 +0000)]
update Markup import for F. Guianas

12 years agominor
Andreas Müller [Fri, 25 May 2012 16:47:24 +0000 (16:47 +0000)]
minor

12 years agothe exception because of the missing profiling agent is not propagated, only a logger...
Katja Luther [Thu, 24 May 2012 11:18:40 +0000 (11:18 +0000)]
the exception because of the missing profiling agent is not propagated, only a logger message will be written

12 years agobugfix for autonym authorship #2888
Andreas Müller [Thu, 24 May 2012 11:13:51 +0000 (11:13 +0000)]
bugfix for autonym authorship #2888

12 years agobugfix for autonym authorship #2888
Andreas Müller [Thu, 24 May 2012 11:10:15 +0000 (11:10 +0000)]
bugfix for autonym authorship #2888

12 years agoCorrect handling for multiple author teams (replace & by , )
Andreas Müller [Wed, 23 May 2012 16:43:28 +0000 (16:43 +0000)]
Correct handling for multiple author teams (replace & by , )

12 years agoAdded property to associate the vibrant-name.xsl and vibrant-taxon.xsl to the name...
l.morris [Wed, 23 May 2012 15:35:38 +0000 (15:35 +0000)]
Added property to associate the vibrant-name.xsl and vibrant-taxon.xsl to the name/taxon service so that the appropriate XSLT is applied to XML in the web browser.

12 years agofix misspelling for warning
Andreas Müller [Tue, 22 May 2012 15:52:52 +0000 (15:52 +0000)]
fix misspelling for warning

12 years agolatest updates to markup import for FdG
Andreas Müller [Tue, 22 May 2012 15:28:54 +0000 (15:28 +0000)]
latest updates to markup import for FdG

12 years agoAdded citation for homotypic synonyms. Modified citation to include only author surna...
l.morris [Tue, 22 May 2012 13:26:30 +0000 (13:26 +0000)]
Added citation for homotypic synonyms. Modified citation to include only author surnames, rather than synonyms in the PDF print output.

12 years agobugfix for protected name title caches in BM import
Andreas Müller [Tue, 22 May 2012 11:54:24 +0000 (11:54 +0000)]
bugfix for protected name title caches in BM import

12 years agominor
Andreas Müller [Tue, 22 May 2012 10:56:36 +0000 (10:56 +0000)]
minor

12 years agoremove deprecated method
Andreas Müller [Mon, 21 May 2012 16:45:22 +0000 (16:45 +0000)]
remove deprecated method

12 years agodebugging for precision
Andreas Müller [Mon, 21 May 2012 14:40:06 +0000 (14:40 +0000)]
debugging for precision

12 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Tue, 8 May 2012 10:02:32 +0000 (10:02 +0000)]
[maven-release-plugin] prepare for next development iteration

12 years ago[maven-release-plugin] prepare release cdmlib-parent-3.0.10 root/tags/cdmlib/cdmlib-parent-3.0.10 cdmlib-parent-3.0.10
edit-jenkins [Tue, 8 May 2012 10:02:30 +0000 (10:02 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.10

12 years agofixing #2879 (Error when using the remote webservice function find NamebyNames)
Andreas Kohlbecker [Mon, 7 May 2012 15:48:53 +0000 (15:48 +0000)]
fixing #2879 (Error when using the remote webservice function find NamebyNames)

12 years agomerging branches/cdmlib/Kew_Palm_Use_Data_Extension into trunk & cleaning up a bit
Andreas Kohlbecker [Mon, 7 May 2012 12:38:20 +0000 (12:38 +0000)]
merging branches/cdmlib/Kew_Palm_Use_Data_Extension into trunk & cleaning up a bit

12 years agoAT: Change to harmonize the Remote controllers Kew_Palm_Use_Data_Extension origin/Kew_Palm_Use_Data_Extension root/branches/cdmlib/Kew_Palm_Use_Data_Extension
a.theys [Mon, 7 May 2012 11:09:25 +0000 (11:09 +0000)]
AT: Change to harmonize the Remote controllers

12 years agomarking methods for harmonization
Andreas Kohlbecker [Mon, 7 May 2012 09:55:26 +0000 (09:55 +0000)]
marking methods for harmonization

12 years agomarking methods for harmonization
Andreas Kohlbecker [Mon, 7 May 2012 09:44:21 +0000 (09:44 +0000)]
marking methods for harmonization

12 years agoAT: Change to harmonize the Remote controllers
a.theys [Mon, 7 May 2012 08:44:59 +0000 (08:44 +0000)]
AT: Change to harmonize the Remote controllers

12 years agoAT: Edited file to remove duplicated call to render
a.theys [Fri, 4 May 2012 17:33:20 +0000 (17:33 +0000)]
AT: Edited file to remove duplicated call to render

12 years agoAT: committing CDMLIB to Branch post Merge
a.theys [Fri, 4 May 2012 17:18:17 +0000 (17:18 +0000)]
AT: committing CDMLIB to Branch post Merge

12 years agoAT: committing latest changes to the CDMLib prior to merging
a.theys [Fri, 4 May 2012 16:57:46 +0000 (16:57 +0000)]
AT: committing latest changes to the CDMLib prior to merging

12 years agoAT: committing latest changes to the CDMLib to try and fix issues with the function...
a.theys [Mon, 30 Apr 2012 16:13:39 +0000 (16:13 +0000)]
AT: committing latest changes to the CDMLib to try and fix issues with the function findByTitle

12 years agoAT: change to fix a lazy initialization problem
a.theys [Thu, 26 Apr 2012 16:22:32 +0000 (16:22 +0000)]
AT: change to fix a lazy initialization problem

12 years agoRemoved console outputs and added check for NameInformation response to add taxon...
Cherian Mathew [Thu, 26 Apr 2012 11:11:10 +0000 (11:11 +0000)]
Removed console outputs and added check for NameInformation response to add taxon lsids only in the case of accepted taxa

12 years agoAT: change of method name and service path
a.theys [Thu, 26 Apr 2012 10:06:45 +0000 (10:06 +0000)]
AT: change of method name and service path

12 years agoAT: committing latest changes to the CDMLib to work from home and fix some outstandin...
a.theys [Wed, 25 Apr 2012 16:27:59 +0000 (16:27 +0000)]
AT: committing latest changes to the CDMLib to work from home and fix some outstanding issues

12 years agoAT: committing latest changes to cdmlib to implement remote methods required by the...
a.theys [Wed, 25 Apr 2012 12:03:02 +0000 (12:03 +0000)]
AT: committing latest changes to cdmlib to implement remote methods required by the dataportal.

12 years agoController class which contains entry points for Name Search, Name Information and...
Cherian Mathew [Tue, 24 Apr 2012 14:11:00 +0000 (14:11 +0000)]
Controller class which contains entry points for Name Search, Name Information and Taxon Information

12 years agoChanged 'getRelatedFrom()' and 'getRelatedTo' from protected to public for controller...
Cherian Mathew [Tue, 24 Apr 2012 14:09:39 +0000 (14:09 +0000)]
Changed 'getRelatedFrom()' and 'getRelatedTo' from protected to public for controller access

12 years agoupdated import of RemoteResponse and ErrorResponse classes
Cherian Mathew [Tue, 24 Apr 2012 14:06:55 +0000 (14:06 +0000)]
updated import of RemoteResponse and ErrorResponse classes

12 years agoRemoteResponse : Root interface for response model enities. This makes it possible...
Cherian Mathew [Tue, 24 Apr 2012 14:06:28 +0000 (14:06 +0000)]
RemoteResponse : Root interface for response model enities. This makes it possible to return a list of different objects (all implementing RemoteResponse)

ErrorResponse : Basic mode entity class which contains an error message

12 years agoNew package which contains dtos for name_catalogue queries
Cherian Mathew [Tue, 24 Apr 2012 13:59:14 +0000 (13:59 +0000)]
New package which contains dtos for name_catalogue queries
- NameSearch for basic name search using string pattern
- NameInformation for name search based on name uuids
- TaxonInformation for taxon search based on taxon uuids

12 years agoAdded json configuration for name_catalogue called 'nameCatalogueJsonConfig'
Cherian Mathew [Tue, 24 Apr 2012 13:56:51 +0000 (13:56 +0000)]
Added json configuration for name_catalogue called 'nameCatalogueJsonConfig'

12 years agoImplementations of functions which,
Cherian Mathew [Tue, 24 Apr 2012 13:55:57 +0000 (13:55 +0000)]
Implementations of functions which,
- find taxon names by title/uuid
- find taxons by uuid

12 years agoAdded 'findTaxonByUuid' for name_catalogue functionality
Cherian Mathew [Tue, 24 Apr 2012 13:46:58 +0000 (13:46 +0000)]
Added 'findTaxonByUuid' for name_catalogue functionality

12 years agoAdded 'findNamesByTitleCache' and 'findNameByUuid' for name_catalogue functionality
Cherian Mathew [Tue, 24 Apr 2012 13:45:58 +0000 (13:45 +0000)]
Added 'findNamesByTitleCache' and 'findNameByUuid' for name_catalogue functionality

12 years agoAdded views for namespace 'name_catalogue'
Cherian Mathew [Tue, 24 Apr 2012 13:31:37 +0000 (13:31 +0000)]
Added views for namespace 'name_catalogue'

12 years agoAT: committing latest changes to the CDMLib during first round of Code review
a.theys [Mon, 23 Apr 2012 13:15:04 +0000 (13:15 +0000)]
AT: committing latest changes to the CDMLib during first round of Code review

12 years agoAT: committing latest changes to the CDMLib (to be used by TaxonCache Strategy) durin...
a.theys [Mon, 23 Apr 2012 09:05:28 +0000 (09:05 +0000)]
AT: committing latest changes to the CDMLib (to be used by TaxonCache Strategy) during first round of Code review

12 years agoAT: committing latest changes to the CDMLib during first round of Code review
a.theys [Mon, 23 Apr 2012 08:32:04 +0000 (08:32 +0000)]
AT: committing latest changes to the CDMLib during first round of Code review

12 years agoAT: committing latest changes to cdmlib to fix an issue with mediaTitle
a.theys [Mon, 23 Apr 2012 07:50:40 +0000 (07:50 +0000)]
AT: committing latest changes to cdmlib to fix an issue with mediaTitle

12 years agofixing localhost issue
Andreas Kohlbecker [Mon, 16 Apr 2012 12:56:23 +0000 (12:56 +0000)]
fixing localhost issue

12 years agodeleting obsolte file
Andreas Kohlbecker [Mon, 16 Apr 2012 12:53:23 +0000 (12:53 +0000)]
deleting obsolte file

12 years agofixing NPE
Andreas Kohlbecker [Mon, 16 Apr 2012 12:47:37 +0000 (12:47 +0000)]
fixing NPE

12 years agoAT: committing Palm extension changes to the CDM Libraries
a.theys [Fri, 13 Apr 2012 15:05:01 +0000 (15:05 +0000)]
AT: committing Palm extension changes to the CDM Libraries

12 years agobugfix for TextDataCreation Mapper (mismatch namespace and dbAttribute
Andreas Müller [Fri, 13 Apr 2012 14:05:52 +0000 (14:05 +0000)]
bugfix for TextDataCreation Mapper (mismatch namespace and dbAttribute

12 years agoadd supplement types to according mappers
Andreas Müller [Fri, 13 Apr 2012 10:48:51 +0000 (10:48 +0000)]
add supplement types to according mappers

12 years agoinclude user defined TaxonRelationship types
Andreas Müller [Thu, 12 Apr 2012 14:42:58 +0000 (14:42 +0000)]
include user defined TaxonRelationship types

12 years agoslightly better handling of precision
Andreas Müller [Thu, 12 Apr 2012 12:16:49 +0000 (12:16 +0000)]
slightly better handling of precision

12 years agochanged BacterialName warning to info
Andreas Müller [Thu, 12 Apr 2012 08:08:35 +0000 (08:08 +0000)]
changed BacterialName warning to info

12 years agominor
l.morris [Wed, 11 Apr 2012 17:24:55 +0000 (17:24 +0000)]
minor