cdmlib.git
5 years agoref #7854: handling of new descriptions moved to editor
Katja Luther [Thu, 10 Jan 2019 13:57:54 +0000 (14:57 +0100)]
ref #7854: handling of new descriptions moved to editor

5 years agoref #7901: adapt test to cleanup in PreferencePredicate
Katja Luther [Wed, 9 Jan 2019 13:42:51 +0000 (14:42 +0100)]
ref #7901: adapt test to cleanup in PreferencePredicate

5 years agoref #7854: avoid NPE
Katja Luther [Wed, 9 Jan 2019 13:41:44 +0000 (14:41 +0100)]
ref #7854: avoid NPE

5 years agoref #7903: TaxonNodeDtoNaturalComparator needs to implement Serializable
Katja Luther [Wed, 9 Jan 2019 13:38:44 +0000 (14:38 +0100)]
ref #7903: TaxonNodeDtoNaturalComparator needs to implement Serializable

5 years agoref #7901: cleaning PreferencePredicates
Katja Luther [Wed, 9 Jan 2019 13:37:45 +0000 (14:37 +0100)]
ref #7901: cleaning PreferencePredicates

5 years agoref #7903: add comparator for taxa in cdm light configurator
Katja Luther [Wed, 9 Jan 2019 13:11:35 +0000 (14:11 +0100)]
ref #7903: add comparator for taxa in cdm light configurator

5 years agoref #7903: add sortIndex to taxon table in cdm light export
Katja Luther [Wed, 9 Jan 2019 09:10:04 +0000 (10:10 +0100)]
ref #7903: add sortIndex to taxon table in cdm light export

5 years agoref #7927 /registration/identifier/**/status web service implemented
Andreas Kohlbecker [Tue, 8 Jan 2019 15:24:20 +0000 (16:24 +0100)]
ref #7927 /registration/identifier/**/status web service implemented

5 years agofix exception if biocase provider is not available
Katja Luther [Tue, 8 Jan 2019 08:36:18 +0000 (09:36 +0100)]
fix exception if biocase provider is not available

5 years agoref #7833 adding missing check for anonymous authentication tokens to CdmUserHelper
Andreas Kohlbecker [Mon, 7 Jan 2019 14:07:58 +0000 (15:07 +0100)]
ref #7833 adding missing check for anonymous authentication tokens to CdmUserHelper

5 years agoref #7833 permission checking in RegistrationWorkingSetService
Andreas Kohlbecker [Mon, 7 Jan 2019 14:07:00 +0000 (15:07 +0100)]
ref #7833 permission checking in RegistrationWorkingSetService

5 years agoref #7833 another method for UserHelper to scan for permissions
Andreas Kohlbecker [Fri, 21 Dec 2018 16:45:05 +0000 (17:45 +0100)]
ref #7833 another method for UserHelper to scan for permissions

5 years agoref #7481 inReference constraints added as method to ReferenceType - making method...
Andreas Kohlbecker [Thu, 20 Dec 2018 12:00:49 +0000 (13:00 +0100)]
ref #7481 inReference constraints added as method to ReferenceType - making method static

5 years agoref #7481 inReference constraints added as method to ReferenceType
Andreas Kohlbecker [Thu, 20 Dec 2018 10:46:50 +0000 (11:46 +0100)]
ref #7481 inReference constraints added as method to ReferenceType

5 years agoref #7887: fix deletion of terms
Katja Luther [Thu, 20 Dec 2018 09:13:05 +0000 (10:13 +0100)]
ref #7887: fix deletion of terms

5 years agoref #7854: adapt DTOs and merge Method for Distributions
Katja Luther [Wed, 19 Dec 2018 12:27:05 +0000 (13:27 +0100)]
ref #7854: adapt DTOs and merge Method for Distributions

5 years agoref #7589 Add service method to find taxon description by marker
Patrick Plitzner [Tue, 18 Dec 2018 13:12:23 +0000 (14:12 +0100)]
ref #7589 Add service method to find taxon description by marker

5 years agoref #7854: adapt DTOs
Katja Luther [Tue, 18 Dec 2018 11:56:28 +0000 (12:56 +0100)]
ref #7854: adapt DTOs

5 years agoref #7854: changes in taxonDistributionDTO
Katja Luther [Mon, 17 Dec 2018 13:50:34 +0000 (14:50 +0100)]
ref #7854: changes in taxonDistributionDTO

5 years agoref #7957 Change marker to avoid "Uses" details view
Patrick Plitzner [Mon, 17 Dec 2018 12:18:01 +0000 (13:18 +0100)]
ref #7957 Change marker to avoid "Uses" details view

5 years agoref #7589 Use TaxonNodeDtos in row wrappers
Patrick Plitzner [Mon, 17 Dec 2018 12:12:13 +0000 (13:12 +0100)]
ref #7589 Use TaxonNodeDtos in row wrappers

5 years agoref #7589 Add service method for description deletion for data sets
Patrick Plitzner [Mon, 17 Dec 2018 12:10:35 +0000 (13:10 +0100)]
ref #7589 Add service method for description deletion for data sets

5 years agoref #7589 Remove reference to default taxon desc from row wrapper
Patrick Plitzner [Mon, 17 Dec 2018 06:39:27 +0000 (07:39 +0100)]
ref #7589 Remove reference to default taxon desc from  row wrapper

5 years agofix wrong locality text in gatheringDTO
Katja Luther [Mon, 17 Dec 2018 11:48:03 +0000 (12:48 +0100)]
fix wrong locality text in gatheringDTO

5 years agofix error in geolocation in abcd import
Katja Luther [Mon, 17 Dec 2018 09:19:52 +0000 (10:19 +0100)]
fix error in geolocation in abcd import

5 years agoref #7854: add taxon to descriptionDTO
Katja Luther [Fri, 14 Dec 2018 12:18:55 +0000 (13:18 +0100)]
ref #7854: add taxon to descriptionDTO

5 years agoref #7951 more complete generic ReferenceEllypsisFormatter
Andreas Kohlbecker [Fri, 14 Dec 2018 20:21:21 +0000 (21:21 +0100)]
ref #7951 more complete generic ReferenceEllypsisFormatter

5 years agoref #7951 moving EllypsisFormatter to cdmlib/model/eu.etaxonomy.cdm.format
Andreas Kohlbecker [Fri, 14 Dec 2018 13:42:19 +0000 (14:42 +0100)]
ref #7951 moving EllypsisFormatter to cdmlib/model/eu.etaxonomy.cdm.format

5 years agofixing wrong boolean operator combination for Restrictions with operator AND_NOT
Andreas Kohlbecker [Thu, 13 Dec 2018 13:56:10 +0000 (14:56 +0100)]
fixing wrong boolean operator combination for Restrictions with operator AND_NOT

5 years agoref #7854: add methods to get DTOs for distribution editor
Katja Luther [Thu, 13 Dec 2018 08:23:16 +0000 (09:23 +0100)]
ref #7854: add methods to get DTOs for distribution editor

5 years agocode cleaning
Katja Luther [Thu, 13 Dec 2018 08:19:19 +0000 (09:19 +0100)]
code cleaning

5 years agoadapt propertyPath for occurences in fieldUnitDto
Katja Luther [Thu, 13 Dec 2018 08:00:48 +0000 (09:00 +0100)]
adapt propertyPath for occurences in fieldUnitDto

5 years agoref #7854: add service method to merge a set of descriptionelements
Katja Luther [Mon, 10 Dec 2018 16:15:43 +0000 (17:15 +0100)]
ref #7854: add service method to merge a set of descriptionelements

5 years agoref #7918 harmonizing ReferencePropertyDefinitions with latest changes in reference...
Andreas Kohlbecker [Fri, 7 Dec 2018 12:00:21 +0000 (13:00 +0100)]
ref #7918 harmonizing ReferencePropertyDefinitions with latest changes in reference interface hierarchy

5 years agoref #7939: add oderInderComnparator and use it in taxonnodeDtoRankAndNameComparator
Katja Luther [Fri, 7 Dec 2018 11:08:41 +0000 (12:08 +0100)]
ref #7939: add oderInderComnparator and use it in taxonnodeDtoRankAndNameComparator

5 years agoDto classes for distribution editor
Katja Luther [Fri, 7 Dec 2018 11:03:57 +0000 (12:03 +0100)]
Dto classes for distribution editor

5 years agoref #6774 Fix owl export file generation
Patrick Plitzner [Wed, 5 Dec 2018 10:13:01 +0000 (11:13 +0100)]
ref #6774 Fix owl export file generation

5 years agoremove predicates moved to TaxonEditorPredicates
Katja Luther [Mon, 3 Dec 2018 11:00:14 +0000 (12:00 +0100)]
remove predicates moved to TaxonEditorPredicates

5 years agosmaller changes in abcd import
Katja Luther [Mon, 3 Dec 2018 10:59:25 +0000 (11:59 +0100)]
smaller changes in abcd import

5 years agoref #7755: provide all data for specimen pages
Katja Luther [Mon, 3 Dec 2018 09:26:25 +0000 (10:26 +0100)]
ref #7755: provide all data for specimen pages

5 years agofix #7367 Fix handling of referenced element in isDeletable() method
Patrick Plitzner [Fri, 30 Nov 2018 13:31:41 +0000 (14:31 +0100)]
fix #7367 Fix handling of referenced element in isDeletable() method

5 years agofix #7367 Evaluate configurator in isDeletable()
Patrick Plitzner [Fri, 30 Nov 2018 11:06:21 +0000 (12:06 +0100)]
fix #7367 Evaluate configurator in isDeletable()

5 years agoref #6805 code cleanup
Patrick Plitzner [Fri, 30 Nov 2018 07:53:43 +0000 (08:53 +0100)]
ref #6805 code cleanup

5 years agominor (reduce log level for inrefs not being books)
Andreas Müller [Thu, 29 Nov 2018 12:39:27 +0000 (13:39 +0100)]
minor (reduce log level for inrefs not being books)

5 years agoAdd validation for journals with authors
Andreas Müller [Thu, 29 Nov 2018 12:38:32 +0000 (13:38 +0100)]
Add validation for journals with authors

5 years agoref #7699 Allow 3 representations for CdmImportBase.getImageMedia
Andreas Müller [Thu, 29 Nov 2018 12:37:08 +0000 (13:37 +0100)]
ref #7699 Allow 3 representations for CdmImportBase.getImageMedia

5 years agoref #7921 add Caucasus area voc uuids
Andreas Müller [Thu, 29 Nov 2018 12:20:39 +0000 (13:20 +0100)]
ref #7921 add Caucasus area voc uuids

5 years agoref #7932 first implementation of PreferenceResolver and some adaption to PreferenceS...
Andreas Müller [Thu, 29 Nov 2018 12:18:07 +0000 (13:18 +0100)]
ref #7932 first implementation of PreferenceResolver and some adaption to PreferenceService API.

 * Correct handling of subtree subjects still open.
 * Also creation of user defined subjects still open.

5 years agocleanup
Andreas Müller [Thu, 29 Nov 2018 12:13:44 +0000 (13:13 +0100)]
cleanup

5 years agoref #7837 Update docx4j version
Patrick Plitzner [Thu, 29 Nov 2018 07:53:35 +0000 (08:53 +0100)]
ref #7837 Update docx4j version

5 years agoref #7930 remove IWithDoi from IAuthoredPublicationBase
Andreas Müller [Wed, 28 Nov 2018 12:39:59 +0000 (13:39 +0100)]
ref #7930 remove IWithDoi from IAuthoredPublicationBase

5 years agorevert unwanted last commit
Andreas Müller [Wed, 28 Nov 2018 12:38:28 +0000 (13:38 +0100)]
revert unwanted last commit

5 years agoref #7930 remove IWithDoi from IAuthoredPublicationBase
Andreas Müller [Wed, 28 Nov 2018 12:37:36 +0000 (13:37 +0100)]
ref #7930 remove IWithDoi from IAuthoredPublicationBase

5 years agofix #7930 removed getDoi from IPublicationBase and IArticle and use IWithDoi instead...
Andreas Müller [Wed, 28 Nov 2018 12:29:22 +0000 (13:29 +0100)]
fix #7930 removed getDoi from IPublicationBase and IArticle and use IWithDoi instead (but not for journals, print series and personel communications)

5 years agoadd Identifier to CdmPermissionClass
Andreas Müller [Wed, 28 Nov 2018 12:25:45 +0000 (13:25 +0100)]
add Identifier to CdmPermissionClass

5 years agofix #7924 fix LIE in TaxonPortalController getSynonymy with subtree filter
Andreas Müller [Tue, 27 Nov 2018 13:34:47 +0000 (14:34 +0100)]
fix #7924 fix LIE in TaxonPortalController getSynonymy with subtree filter

5 years agosome renamings and javadoc
Andreas Müller [Tue, 27 Nov 2018 13:31:05 +0000 (14:31 +0100)]
some renamings and javadoc

5 years agoref #7929: clear the member list in group when deleting the group
Katja Luther [Tue, 27 Nov 2018 13:11:46 +0000 (14:11 +0100)]
ref #7929: clear the member list in group when deleting the group

5 years agoinitializing GatheringEvent.exactLocation to avoid LIE in UIs
Andreas Kohlbecker [Thu, 22 Nov 2018 14:07:06 +0000 (15:07 +0100)]
initializing GatheringEvent.exactLocation to avoid LIE in UIs

5 years agoref #7922: add markertype for distribution editor descriptions
Katja Luther [Thu, 22 Nov 2018 10:34:17 +0000 (11:34 +0100)]
ref #7922: add markertype for distribution editor descriptions

5 years agoref #7837 Implement docx export
Patrick Plitzner [Thu, 22 Nov 2018 08:30:34 +0000 (09:30 +0100)]
ref #7837 Implement docx export

5 years agoref #7918 harmonizing ReferencePropertyDefinitions with updated reference interface...
Andreas Kohlbecker [Wed, 21 Nov 2018 15:44:14 +0000 (16:44 +0100)]
ref #7918 harmonizing ReferencePropertyDefinitions with updated reference interface hierarchy and hiding date pulished when not needed

5 years agominor
Andreas Müller [Tue, 20 Nov 2018 17:21:04 +0000 (18:21 +0100)]
minor

5 years agosome improvements to name parser for better BookSection identification
Andreas Müller [Tue, 20 Nov 2018 16:14:57 +0000 (17:14 +0100)]
some improvements to name parser for better BookSection identification

5 years agoadd convenience methods for reference type
Andreas Müller [Tue, 20 Nov 2018 16:13:53 +0000 (17:13 +0100)]
add convenience methods for reference type

5 years agoref #7914 add javadoc to IWithIsbn interface
Andreas Müller [Tue, 20 Nov 2018 16:13:19 +0000 (17:13 +0100)]
ref #7914 add javadoc to IWithIsbn interface

5 years agoimprove journal parser
Andreas Müller [Tue, 20 Nov 2018 16:12:44 +0000 (17:12 +0100)]
improve journal parser

5 years agocleanup and javadoc
Andreas Müller [Tue, 20 Nov 2018 16:12:02 +0000 (17:12 +0100)]
cleanup and javadoc

5 years agofix #7915 move datePublished to subinterface IWithAuthorAndDate, remove from IJournal...
Andreas Müller [Tue, 20 Nov 2018 16:10:34 +0000 (17:10 +0100)]
fix #7915 move datePublished to subinterface IWithAuthorAndDate, remove from IJournal and IPrintSeries this way

5 years agofix #7914 add ISBN to IProceedings (by adding new interface IWithIsbn)
Andreas Müller [Tue, 20 Nov 2018 14:30:05 +0000 (15:30 +0100)]
fix #7914 add ISBN to IProceedings (by adding new interface IWithIsbn)

5 years agofix #7913 remove authorship from IJournal and IPrintSeries
Andreas Müller [Tue, 20 Nov 2018 14:23:49 +0000 (15:23 +0100)]
fix #7913 remove authorship from IJournal and IPrintSeries

5 years agofixing NPE in Point and minor change in java doc to ReferencePropertyDefinitions
Andreas Kohlbecker [Tue, 20 Nov 2018 15:54:25 +0000 (16:54 +0100)]
fixing NPE in Point and minor change in java doc to ReferencePropertyDefinitions

5 years agoadding iReport to ReferencePropertyDefinitions - 2
Andreas Kohlbecker [Mon, 19 Nov 2018 16:59:47 +0000 (17:59 +0100)]
adding iReport to ReferencePropertyDefinitions - 2

5 years agoadding iReport to ReferencePropertyDefinitions
Andreas Kohlbecker [Mon, 19 Nov 2018 16:58:38 +0000 (17:58 +0100)]
adding iReport to ReferencePropertyDefinitions

5 years agoref #7217 add double apostrophe as second marker
Andreas Müller [Mon, 19 Nov 2018 11:57:32 +0000 (12:57 +0100)]
ref #7217 add double apostrophe as second marker

5 years agoref #7902, ref #7901 add generic to allow return types for defaultValue and to allow...
Andreas Müller [Mon, 12 Nov 2018 16:06:21 +0000 (17:06 +0100)]
ref #7902, ref #7901 add generic to allow return types for defaultValue and to allow toString and fromString methods

5 years agoref #7217 creating test to reproduce long lat parsing problem
Andreas Kohlbecker [Mon, 19 Nov 2018 10:52:15 +0000 (11:52 +0100)]
ref #7217 creating test to reproduce long lat parsing problem

5 years agoCoordinateConverterTest using unicode constants for all signs
Andreas Kohlbecker [Mon, 19 Nov 2018 10:37:49 +0000 (11:37 +0100)]
CoordinateConverterTest using unicode constants for all signs

5 years agocode cleaning, removing system.err...
Katja Luther [Mon, 19 Nov 2018 08:37:04 +0000 (09:37 +0100)]
code cleaning, removing system.err...

5 years agoref #7760 Add collection code to citation
Patrick Plitzner [Fri, 16 Nov 2018 13:05:50 +0000 (14:05 +0100)]
ref #7760 Add collection code to citation

5 years agoref #7600 removing EntityCollectionSetterAdapter fields from Team and AnnotatableEnti...
Andreas Kohlbecker [Fri, 16 Nov 2018 12:26:07 +0000 (13:26 +0100)]
ref #7600 removing EntityCollectionSetterAdapter fields from Team and AnnotatableEntity since it no longer caches Methods

5 years agoref #7600 EntityCollectionSetterAdapter no longer caching Methods to be serializable
Andreas Kohlbecker [Thu, 15 Nov 2018 15:46:08 +0000 (16:46 +0100)]
ref #7600 EntityCollectionSetterAdapter no longer caching Methods to be serializable

5 years agoref #7600 EntityCollectionSetterAdapter serializable
Andreas Kohlbecker [Thu, 15 Nov 2018 15:14:40 +0000 (16:14 +0100)]
ref #7600 EntityCollectionSetterAdapter serializable

5 years agoReturn created feature node instead of feature tree
Patrick Plitzner [Thu, 15 Nov 2018 14:13:42 +0000 (15:13 +0100)]
Return created feature node instead of feature tree

5 years agoref #7600 adding usage example to EntityCollectionSetterAdapter doc
Andreas Kohlbecker [Thu, 15 Nov 2018 13:50:12 +0000 (14:50 +0100)]
ref #7600 adding usage example to EntityCollectionSetterAdapter doc

5 years agoref #7600 renaming arument in EntityCollectionSetterAdapter
Andreas Kohlbecker [Thu, 15 Nov 2018 13:24:37 +0000 (14:24 +0100)]
ref #7600 renaming arument in EntityCollectionSetterAdapter

5 years agoref #7600 using EntityCollectionSetterAdapter for AnnotatableEntity.annotations
Andreas Kohlbecker [Thu, 15 Nov 2018 13:23:37 +0000 (14:23 +0100)]
ref #7600 using EntityCollectionSetterAdapter for AnnotatableEntity.annotations

5 years agoref #7600 using EntityCollectionSetterAdapter for Team.teamMembers - adding @XmlTrans...
Andreas Kohlbecker [Thu, 15 Nov 2018 13:23:09 +0000 (14:23 +0100)]
ref #7600 using EntityCollectionSetterAdapter for Team.teamMembers - adding @XmlTransient to member field teamMembersSetterAdapter

5 years agoref #7600 using EntityCollectionSetterAdapter for Team.teamMembers
Andreas Kohlbecker [Thu, 15 Nov 2018 12:19:26 +0000 (13:19 +0100)]
ref #7600 using EntityCollectionSetterAdapter for Team.teamMembers

5 years agoref #7600 EntityCollectionSetterAdapter implemented
Andreas Kohlbecker [Thu, 15 Nov 2018 12:18:59 +0000 (13:18 +0100)]
ref #7600 EntityCollectionSetterAdapter implemented

5 years agofixing LazyInitializationException
Andreas Kohlbecker [Tue, 13 Nov 2018 14:11:35 +0000 (15:11 +0100)]
fixing LazyInitializationException

5 years agoref #7887 Return newly created DTO from service method
Patrick Plitzner [Tue, 13 Nov 2018 12:27:05 +0000 (13:27 +0100)]
ref #7887 Return newly created DTO from service method

5 years agoref #7887 Set parent DTOs during initialization
Patrick Plitzner [Tue, 13 Nov 2018 10:19:52 +0000 (11:19 +0100)]
ref #7887 Set parent DTOs during initialization

5 years agoref #7887 Add "parent" DTOs to TermDto
Patrick Plitzner [Tue, 13 Nov 2018 10:02:00 +0000 (11:02 +0100)]
ref #7887 Add "parent" DTOs to TermDto

5 years agoref #7887 Refactor TermDto usage
Patrick Plitzner [Tue, 13 Nov 2018 09:26:59 +0000 (10:26 +0100)]
ref #7887 Refactor TermDto usage

5 years agoref #7887 Remove getParent()
Patrick Plitzner [Tue, 13 Nov 2018 08:04:11 +0000 (09:04 +0100)]
ref #7887 Remove getParent()

5 years agoref #7900 reverting : read-only transactions in DTO service with Propagation.REQUIRES_NEW
Andreas Kohlbecker [Tue, 13 Nov 2018 08:19:01 +0000 (09:19 +0100)]
ref #7900 reverting : read-only transactions in DTO service with Propagation.REQUIRES_NEW

5 years agoref #7900 read-only transactions in DTO service with Propagation.REQUIRES_NEW
Andreas Kohlbecker [Mon, 12 Nov 2018 16:06:57 +0000 (17:06 +0100)]
ref #7900 read-only transactions in DTO service with Propagation.REQUIRES_NEW

5 years agoref #7901 implement IPreferencePredicate in CdmPreference and service layer
Andreas Müller [Mon, 12 Nov 2018 15:49:30 +0000 (16:49 +0100)]
ref #7901 implement IPreferencePredicate in CdmPreference and service layer

5 years agoref #7901, ref #7902 Create IPreferencePredicate and include getDefaultValue
Andreas Müller [Mon, 12 Nov 2018 15:48:15 +0000 (16:48 +0100)]
ref #7901, ref #7902  Create IPreferencePredicate and include getDefaultValue