Andreas Müller [Wed, 18 Oct 2017 16:01:07 +0000 (18:01 +0200)]
cleanup
Andreas Kohlbecker [Wed, 18 Oct 2017 12:37:36 +0000 (14:37 +0200)]
intoducing CdmAuthorityParsingException to avoid invalid use of non api sun.security.provider.PolicyParser.ParsingException
Katja Luther [Wed, 18 Oct 2017 11:27:23 +0000 (13:27 +0200)]
minor
Katja Luther [Wed, 18 Oct 2017 11:13:49 +0000 (13:13 +0200)]
revert saveOrUpdate adding
Katja Luther [Wed, 18 Oct 2017 10:59:33 +0000 (12:59 +0200)]
setPublishFlag needs to be transactional
Katja Luther [Wed, 18 Oct 2017 10:06:04 +0000 (12:06 +0200)]
minor
Katja Luther [Wed, 18 Oct 2017 10:03:37 +0000 (12:03 +0200)]
save updated taxa/synonyms in setPublishedFlag
Andreas Kohlbecker [Wed, 18 Oct 2017 09:23:25 +0000 (11:23 +0200)]
fix #7021 excluding not protected cache fields from modification check in CdmSecurityHibernateInterceptor
Andreas Kohlbecker [Tue, 17 Oct 2017 13:53:03 +0000 (15:53 +0200)]
fix #7018 ref #7020 simple permission voter and authorities for SpecimenOrObservationBase implemented, more complex voter implementation postponed
Katja Luther [Tue, 17 Oct 2017 13:22:43 +0000 (15:22 +0200)]
abcd import new taxa to new classification if configured
Katja Luther [Tue, 17 Oct 2017 11:40:15 +0000 (13:40 +0200)]
abcd import: handle empty collecting areas and fix used classification for new taxa
Andreas Kohlbecker [Mon, 16 Oct 2017 15:20:40 +0000 (17:20 +0200)]
ref #7018 ref #7016 turning the not needed TypeDesignationVoter into a SpecimenOrObservationBaseVoter - fixing spring configuration
Andreas Kohlbecker [Mon, 16 Oct 2017 14:04:52 +0000 (16:04 +0200)]
ref #7018 ref #7016 turning the not needed TypeDesignationVoter into a SpecimenOrObservationBaseVoter
Katja Luther [Mon, 16 Oct 2017 13:54:30 +0000 (15:54 +0200)]
remove override of saveOrUpdate
Katja Luther [Mon, 16 Oct 2017 10:35:10 +0000 (12:35 +0200)]
move initialize to constructor and small changes in cdmlightexport
Andreas Kohlbecker [Fri, 13 Oct 2017 16:16:18 +0000 (18:16 +0200)]
ref #7016 implementing TypeDesignationVoter and more robust permissions:
- avoiding string based cdm authorities
- full test set for CdmPermissionClass
Andreas Kohlbecker [Fri, 13 Oct 2017 15:44:57 +0000 (17:44 +0200)]
removing offending import of javafx
Andreas Kohlbecker [Wed, 11 Oct 2017 18:21:33 +0000 (20:21 +0200)]
refactoring CdmPermissionEvaluator and CdmAuthoritiy for a more comprehensible API
Andreas Müller [Wed, 11 Oct 2017 14:45:35 +0000 (16:45 +0200)]
cleanup
Andreas Müller [Wed, 11 Oct 2017 14:44:58 +0000 (16:44 +0200)]
improve toString for User and Usergroup
Andreas Kohlbecker [Tue, 10 Oct 2017 12:52:00 +0000 (14:52 +0200)]
CdmSimpleNameTypeFilter to allow find CdmTypes by simple name
Katja Luther [Tue, 10 Oct 2017 10:27:00 +0000 (12:27 +0200)]
remove subTreeConfigurator and updater from io package
Katja Luther [Tue, 10 Oct 2017 10:11:42 +0000 (12:11 +0200)]
smaller changes in ForSubtreeConfigurator
Katja Luther [Tue, 10 Oct 2017 10:01:52 +0000 (12:01 +0200)]
smaller changes in ForSubtreeConfigurator
Andreas Müller [Mon, 9 Oct 2017 04:44:49 +0000 (06:44 +0200)]
cleanup
Katja Luther [Fri, 6 Oct 2017 08:47:59 +0000 (10:47 +0200)]
add cdmPreference showLifeForm
Andreas Kohlbecker [Thu, 28 Sep 2017 08:11:46 +0000 (10:11 +0200)]
fix #6987 initializing extensions to avoid LIE
Andreas Kohlbecker [Wed, 27 Sep 2017 13:29:07 +0000 (15:29 +0200)]
ref #6964 adding missing data to registration response objects
jenkins [Mon, 25 Sep 2017 13:17:53 +0000 (15:17 +0200)]
Updating develop poms back to pre merge state
jenkins [Mon, 25 Sep 2017 13:17:53 +0000 (15:17 +0200)]
Merge branch 'master' into develop
jenkins [Mon, 25 Sep 2017 13:17:52 +0000 (15:17 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Mon, 25 Sep 2017 13:17:48 +0000 (15:17 +0200)]
Merge branch 'release/4.10.0'
jenkins [Mon, 25 Sep 2017 13:03:09 +0000 (15:03 +0200)]
updating poms for branch'release/4.10.0' with non-snapshot versions
jenkins [Mon, 25 Sep 2017 12:56:02 +0000 (14:56 +0200)]
updating poms for 4.11.0-SNAPSHOT development
Andreas Müller [Mon, 25 Sep 2017 12:48:55 +0000 (14:48 +0200)]
ref #6968 add taxon title to warning
Andreas Müller [Mon, 25 Sep 2017 12:10:15 +0000 (14:10 +0200)]
Minor change in error handling in CDM light
Katja Luther [Mon, 25 Sep 2017 10:58:08 +0000 (12:58 +0200)]
fix #6968: add warning if indiv. assoc. has no specimen
Katja Luther [Mon, 25 Sep 2017 09:54:44 +0000 (11:54 +0200)]
code cleaning
Andreas Müller [Mon, 25 Sep 2017 08:23:52 +0000 (10:23 +0200)]
#2342 ref #6755 try to fix LIE in remote
Andreas Müller [Sun, 24 Sep 2017 19:49:57 +0000 (21:49 +0200)]
ref #2342 ref 6755 fix DwC-A export test
Katja Luther [Sun, 24 Sep 2017 19:16:32 +0000 (21:16 +0200)]
remove possibility of delete media of media specimen
Katja Luther [Sun, 24 Sep 2017 19:11:53 +0000 (21:11 +0200)]
approve media delete for multiple referenced media
Andreas Müller [Sun, 24 Sep 2017 08:57:05 +0000 (10:57 +0200)]
ref #2342 ref 6755 fix some issues in higherClassification handling in DwC-A export
Andreas Müller [Fri, 22 Sep 2017 21:42:57 +0000 (23:42 +0200)]
ref #2342 fix bug in higherClassification handling in DwC-A export and adapt tests
Andreas Müller [Fri, 22 Sep 2017 19:23:04 +0000 (21:23 +0200)]
ref #6755 add header option to DwC-A export webservice
Andreas Müller [Fri, 22 Sep 2017 18:59:33 +0000 (20:59 +0200)]
ref #2342 first implementation of higherClassification handling in DwC-A export
Andreas Müller [Fri, 22 Sep 2017 18:54:36 +0000 (20:54 +0200)]
cleanup
Andreas Müller [Fri, 22 Sep 2017 15:59:24 +0000 (17:59 +0200)]
revert unwanted commit
a509a0ab9082876741
Andreas Müller [Fri, 22 Sep 2017 15:55:43 +0000 (17:55 +0200)]
#6755 added withHigherClassification to DwC-A export webservice
Andreas Müller [Fri, 22 Sep 2017 15:51:49 +0000 (17:51 +0200)]
cleanup
Andreas Müller [Fri, 22 Sep 2017 14:06:34 +0000 (16:06 +0200)]
cleanup
Andreas Müller [Fri, 22 Sep 2017 13:49:33 +0000 (15:49 +0200)]
ref #6730 try to fix compilation error
Andreas Müller [Fri, 22 Sep 2017 12:40:48 +0000 (14:40 +0200)]
ref #6730 further simplify/unify MediaServiceImpl.delete code
Andreas Müller [Fri, 22 Sep 2017 11:48:11 +0000 (13:48 +0200)]
ref #6730 move updatedObject decleration into loop
Katja Luther [Fri, 22 Sep 2017 08:06:31 +0000 (10:06 +0200)]
ref #/6730: add all updated objcts to the deleteResult
Andreas Müller [Thu, 21 Sep 2017 20:51:24 +0000 (22:51 +0200)]
ref #6730 try to remove compilation problem in MediaServiceImpl.delete
Andreas Müller [Thu, 21 Sep 2017 20:06:03 +0000 (22:06 +0200)]
ref #6730 remove some further redundant code in MediaServiceImpl.delete
Katja Luther [Thu, 21 Sep 2017 18:55:52 +0000 (20:55 +0200)]
fix #6730: handle description elements of taxa, names and specimen all the same in media delete
Katja Luther [Thu, 21 Sep 2017 15:59:25 +0000 (17:59 +0200)]
add try/catch for handling of description elements
Andreas Müller [Thu, 21 Sep 2017 15:49:50 +0000 (17:49 +0200)]
ref #6730 cleanup
Andreas Kohlbecker [Thu, 21 Sep 2017 13:56:33 +0000 (15:56 +0200)]
ref #6964 Registration webservice endpoint for names
Andreas Kohlbecker [Thu, 21 Sep 2017 13:29:50 +0000 (15:29 +0200)]
ref #6964 base implementation of the RegistrationController
Katja Luther [Thu, 21 Sep 2017 09:00:26 +0000 (11:00 +0200)]
add new enum ExportType
Katja Luther [Thu, 21 Sep 2017 08:49:29 +0000 (10:49 +0200)]
the export result needs to know from which kind of export it is
Andreas Müller [Wed, 20 Sep 2017 13:14:16 +0000 (15:14 +0200)]
cleanup
Katja Luther [Wed, 20 Sep 2017 12:22:23 +0000 (14:22 +0200)]
fix creation of new namedAreas in specimen import and search for isocode
Andreas Müller [Wed, 20 Sep 2017 12:11:19 +0000 (14:11 +0200)]
ref #6960
Katja Luther [Wed, 20 Sep 2017 10:50:02 +0000 (12:50 +0200)]
fix gatheringAgent import in ABCD Import
Katja Luther [Wed, 20 Sep 2017 08:09:20 +0000 (10:09 +0200)]
ref #6627: use taxonnodeFilter and partitioner for cdmLightExport
Katja Luther [Tue, 19 Sep 2017 13:28:08 +0000 (15:28 +0200)]
pass the vocService to the setCountry method
Andreas Müller [Tue, 19 Sep 2017 10:50:39 +0000 (12:50 +0200)]
ref #6957 first version of viral name cache strategy
Katja Luther [Fri, 15 Sep 2017 12:24:24 +0000 (14:24 +0200)]
add the new created namedArea for gathering event to a vocabulary in specimen import
Katja Luther [Fri, 15 Sep 2017 12:22:16 +0000 (14:22 +0200)]
ref #6933: selected taxonNode is exported as well
Katja Luther [Fri, 15 Sep 2017 12:10:24 +0000 (14:10 +0200)]
create new Area for GatheringArea with label and add to Vocabulary
Andreas Kohlbecker [Fri, 15 Sep 2017 08:58:45 +0000 (10:58 +0200)]
fix #6948 ref #6324 commenting and removing broken dozer mapping for synonymRelations
Andreas Kohlbecker [Fri, 15 Sep 2017 08:19:04 +0000 (10:19 +0200)]
fix #6836 adding missing SwaggerGroup for static OAI-PMH doc
Katja Luther [Fri, 15 Sep 2017 08:42:18 +0000 (10:42 +0200)]
fix cdm light export only for taxonnodes
Katja Luther [Fri, 15 Sep 2017 07:38:49 +0000 (09:38 +0200)]
ref #6730: updated objects need to be saved if media is deleted
Katja Luther [Fri, 15 Sep 2017 07:18:36 +0000 (09:18 +0200)]
ref #6730:adapt the messages
Katja Luther [Fri, 15 Sep 2017 07:15:23 +0000 (09:15 +0200)]
ref #6730: minor
Katja Luther [Fri, 15 Sep 2017 07:13:18 +0000 (09:13 +0200)]
ref #6730: fix delete media if it is used in taxonnamedescription
Katja Luther [Thu, 14 Sep 2017 19:26:59 +0000 (21:26 +0200)]
minor
Katja Luther [Thu, 14 Sep 2017 19:16:30 +0000 (21:16 +0200)]
minor
Katja Luther [Thu, 14 Sep 2017 19:10:09 +0000 (21:10 +0200)]
remove setSecundum in io package
Katja Luther [Thu, 14 Sep 2017 18:45:53 +0000 (20:45 +0200)]
fix abcd import for associated units
Katja Luther [Thu, 14 Sep 2017 18:44:10 +0000 (20:44 +0200)]
minor
Katja Luther [Thu, 14 Sep 2017 18:39:35 +0000 (20:39 +0200)]
add monitoredService method for setsecundum
Katja Luther [Thu, 14 Sep 2017 14:11:37 +0000 (16:11 +0200)]
ref #6730: set result to Abort if media is used elsewhere
Andreas Müller [Thu, 14 Sep 2017 09:08:32 +0000 (11:08 +0200)]
fix #6842 fix bugs in Registration.setName
Andreas Müller [Wed, 13 Sep 2017 21:57:01 +0000 (23:57 +0200)]
cleanup
Andreas Müller [Wed, 13 Sep 2017 21:56:35 +0000 (23:56 +0200)]
fix #3740 implement setPublish for subtrees
Andreas Müller [Wed, 13 Sep 2017 15:09:39 +0000 (17:09 +0200)]
ref #3740 further refactor operations in io layer and add publishForSubtreeUpdater
Andreas Müller [Wed, 13 Sep 2017 14:39:03 +0000 (16:39 +0200)]
ref #3740 refactor operations in io layer
* move operations and operation configurators to a separate package (remove from common package) as they are not realy related to import or export
* operations are long running tasks using the io framework but not importing or exporting data
Katja Luther [Tue, 12 Sep 2017 07:13:41 +0000 (09:13 +0200)]
ABCD import:set fieldUnit in derivedUnitFace after creation to avoid new creation of fieldUnit
Andreas Kohlbecker [Mon, 11 Sep 2017 08:52:56 +0000 (10:52 +0200)]
adapting test to updated data at BHL and adding comment about pars problem (ref #6939)
Andreas Müller [Fri, 8 Sep 2017 15:19:10 +0000 (17:19 +0200)]
revert ignore on Mobot test
Andreas Müller [Fri, 8 Sep 2017 14:24:59 +0000 (16:24 +0200)]
revert MediaUtils
Andreas Müller [Fri, 8 Sep 2017 14:23:56 +0000 (16:23 +0200)]
set Mobot test to ignore preliminary
Katja Luther [Fri, 8 Sep 2017 12:38:55 +0000 (14:38 +0200)]
cdmLight export: add classification export again
Katja Luther [Fri, 8 Sep 2017 12:19:23 +0000 (14:19 +0200)]
adapt cdmLightExport for using TaxonNodeFilter