Katja Luther [Thu, 27 Jun 2019 12:11:38 +0000 (14:11 +0200)]
smaller changes in ABCD import - continue
Katja Luther [Thu, 27 Jun 2019 12:10:29 +0000 (14:10 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Thu, 27 Jun 2019 12:09:49 +0000 (14:09 +0200)]
smaller changes in ABCD import
Katja Luther [Thu, 27 Jun 2019 07:08:24 +0000 (09:08 +0200)]
ref #8182: minor
Katja Luther [Wed, 26 Jun 2019 12:13:32 +0000 (14:13 +0200)]
ref #8182: accession number is required in webservice
Katja Luther [Wed, 26 Jun 2019 11:56:23 +0000 (13:56 +0200)]
ref #8182: add header to failed response
Katja Luther [Wed, 26 Jun 2019 08:05:09 +0000 (10:05 +0200)]
ref #8182: handle not existing dna for accession number
Katja Luther [Tue, 25 Jun 2019 12:33:46 +0000 (14:33 +0200)]
cdmlight: change area category to the area level
Patrick Plitzner [Tue, 25 Jun 2019 11:39:37 +0000 (13:39 +0200)]
ref #8248 Add feature to export (partially)
Patrick Plitzner [Tue, 25 Jun 2019 08:24:43 +0000 (10:24 +0200)]
ref #8248, #6774 Add character to export
- adapt test
Patrick Plitzner [Fri, 21 Jun 2019 15:59:05 +0000 (17:59 +0200)]
ref #8248, #6774 Add sources to import/export
Patrick Plitzner [Fri, 21 Jun 2019 12:18:35 +0000 (14:18 +0200)]
ref #8248, #6774 Improve import/export performance
Patrick Plitzner [Wed, 19 Jun 2019 15:04:01 +0000 (17:04 +0200)]
ref #8335 Add character matrix table state DB preference
Andreas Müller [Mon, 17 Jun 2019 10:08:02 +0000 (12:08 +0200)]
add hybrid name save to import base class
Andreas Müller [Mon, 17 Jun 2019 10:07:19 +0000 (12:07 +0200)]
add E+M rank uuids to rank class
Katja Luther [Mon, 17 Jun 2019 09:48:07 +0000 (11:48 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Mon, 17 Jun 2019 09:47:40 +0000 (11:47 +0200)]
set dnaSource to null in test
Patrick Plitzner [Mon, 17 Jun 2019 09:47:13 +0000 (11:47 +0200)]
ref #8248, #6774 Add progress monitor to import/export
Katja Luther [Mon, 17 Jun 2019 07:57:31 +0000 (09:57 +0200)]
smaller changes in abcd import and cdm light export
Patrick Plitzner [Mon, 17 Jun 2019 08:35:24 +0000 (10:35 +0200)]
ref #6774 Add progress monitor to owl export
Patrick Plitzner [Fri, 14 Jun 2019 11:51:36 +0000 (13:51 +0200)]
ref #8248, #6774 Add media to import/export
Patrick Plitzner [Fri, 14 Jun 2019 09:58:35 +0000 (11:58 +0200)]
ref #8248 Only add term to vocabulary if term is newly created
Patrick Plitzner [Fri, 14 Jun 2019 09:53:59 +0000 (11:53 +0200)]
ref #8248 Only add term to vocabulary if term is newly created
Patrick Plitzner [Thu, 13 Jun 2019 11:15:30 +0000 (13:15 +0200)]
ref #8248, #6774 Add plural to import/export
- add test for plural and abbrevLabel
Patrick Plitzner [Thu, 13 Jun 2019 07:48:24 +0000 (09:48 +0200)]
ref #8248, #6774 Add symbol, symbol2 and idInVocabulary to import/export
- change rdf identifier to lowercase
Andreas Müller [Wed, 5 Jun 2019 11:17:03 +0000 (13:17 +0200)]
fix #8257 remove remaining deprecated FeatureNode.NewInstance method
Katja Luther [Wed, 5 Jun 2019 07:34:09 +0000 (09:34 +0200)]
overwrite equals for taxonnodeDto
Katja Luther [Tue, 4 Jun 2019 20:21:01 +0000 (22:21 +0200)]
ref #8047: configurable display of status in drop down, new enum and predicate
Andreas Kohlbecker [Tue, 4 Jun 2019 10:39:13 +0000 (12:39 +0200)]
ref #8321 implementing page by restriction method to allow for flexible web service queries, also protecting unpublished taxa and names ref #3560
Andreas Müller [Tue, 4 Jun 2019 08:14:11 +0000 (10:14 +0200)]
add rollback check in ExcelImportBase
Andreas Müller [Tue, 4 Jun 2019 08:10:49 +0000 (10:10 +0200)]
fix compilation error in BaseListController
Katja Luther [Tue, 4 Jun 2019 06:58:09 +0000 (08:58 +0200)]
fix test as cdm light creates all tables now
Andreas Kohlbecker [Mon, 3 Jun 2019 15:25:17 +0000 (17:25 +0200)]
generic webservice method for all cdm entitiy list controllers to search by Restriction
Katja Luther [Mon, 3 Jun 2019 11:01:18 +0000 (13:01 +0200)]
ref #8322: adapt TaxonNodeDtoComparator to compare the names by taggedTitle
Andreas Kohlbecker [Fri, 31 May 2019 07:22:48 +0000 (09:22 +0200)]
ref #5857, ref #8319 adding TypedEntityRefernces to nom status TaggedText and fixing json serialization for EntitiyReferences in taxon.taggedTitle processing
Andreas Kohlbecker [Fri, 31 May 2019 07:15:52 +0000 (09:15 +0200)]
fix #8319 NomenclaturalStatus webservice and according service methods implemented
Andreas Kohlbecker [Wed, 29 May 2019 17:47:56 +0000 (19:47 +0200)]
fix #8314 implementing taxonname.taggedFullTitle for model class and in web service controller
Katja Luther [Wed, 29 May 2019 11:04:08 +0000 (13:04 +0200)]
ref #8273: check for DNA data for provided biocase provider
Katja Luther [Wed, 29 May 2019 11:00:33 +0000 (13:00 +0200)]
minor
Katja Luther [Wed, 29 May 2019 10:59:54 +0000 (12:59 +0200)]
ref #8182: adapt occurrence DTOs to use them in details page of blast result
Katja Luther [Wed, 29 May 2019 10:52:08 +0000 (12:52 +0200)]
ref #8045: add toString() to the preference enums
Patrick Plitzner [Wed, 29 May 2019 09:51:00 +0000 (11:51 +0200)]
ref #8248 Add term vocbulary import test + code cleanup
Patrick Plitzner [Wed, 29 May 2019 08:37:55 +0000 (10:37 +0200)]
ref #8248 Fix property string access
Patrick Plitzner [Wed, 29 May 2019 07:41:35 +0000 (09:41 +0200)]
ref #6774 Init export configurator
Patrick Plitzner [Tue, 28 May 2019 15:51:08 +0000 (17:51 +0200)]
ref #8248 Adapt test to import
Patrick Plitzner [Tue, 28 May 2019 15:50:35 +0000 (17:50 +0200)]
ref #8248 Set UUID during import
Patrick Plitzner [Tue, 28 May 2019 13:02:24 +0000 (15:02 +0200)]
ref #6774 Adapt test to export format
Katja Luther [Mon, 27 May 2019 12:56:04 +0000 (14:56 +0200)]
fix tests for cdmlight
Katja Luther [Mon, 27 May 2019 12:13:39 +0000 (14:13 +0200)]
fix preference service
Patrick Plitzner [Mon, 27 May 2019 12:00:43 +0000 (14:00 +0200)]
ref #8248, #6774 Fix bean names
Katja Luther [Mon, 27 May 2019 10:48:41 +0000 (12:48 +0200)]
ref #8045: add remove to preference service and dao
Patrick Plitzner [Mon, 27 May 2019 07:58:17 +0000 (09:58 +0200)]
ref #8248 Implement termvocabulary import
Patrick Plitzner [Mon, 27 May 2019 07:39:17 +0000 (09:39 +0200)]
ref #6774 Set vocabulary for partOf and kindOf terms in export
Patrick Plitzner [Mon, 27 May 2019 07:15:33 +0000 (09:15 +0200)]
ref #6774 Fix node hierarchy in export
Patrick Plitzner [Mon, 27 May 2019 07:11:06 +0000 (09:11 +0200)]
ref #8248 Extract CDM entity creation to util
Patrick Plitzner [Sun, 26 May 2019 13:48:31 +0000 (15:48 +0200)]
ref #8248, #6774 Extract model creation form import and export to util
Patrick Plitzner [Sun, 26 May 2019 13:30:48 +0000 (15:30 +0200)]
ref #8248 Move rdf model to import state
Patrick Plitzner [Sun, 26 May 2019 13:19:09 +0000 (15:19 +0200)]
ref #6774 Use UUID for feature tree export
Patrick Plitzner [Fri, 24 May 2019 12:22:23 +0000 (14:22 +0200)]
ref #6774 Fix class cast exception
Patrick Plitzner [Fri, 24 May 2019 11:48:55 +0000 (13:48 +0200)]
ref #6774 Add service method findVocabularyDtoByTermTypes()
Andreas Kohlbecker [Fri, 24 May 2019 11:59:08 +0000 (13:59 +0200)]
ref #8209 modularization of reference init strategies - bug fix
Andreas Kohlbecker [Fri, 24 May 2019 09:49:26 +0000 (11:49 +0200)]
ref #8209 modularization of reference init strategies
Andreas Kohlbecker [Fri, 24 May 2019 09:36:20 +0000 (11:36 +0200)]
ref #8209 modularization of reference init strategies and improving EntitiyInitStrategy class
Katja Luther [Thu, 23 May 2019 12:19:53 +0000 (14:19 +0200)]
minor
Katja Luther [Thu, 23 May 2019 12:07:37 +0000 (14:07 +0200)]
fix sortindex in cdmlight export
Patrick Plitzner [Thu, 23 May 2019 10:03:47 +0000 (12:03 +0200)]
ref #6774 Refactor export class inheritance
Patrick Plitzner [Thu, 23 May 2019 08:43:18 +0000 (10:43 +0200)]
ref #6774 Extract all resource creation to util class
Andreas Müller [Thu, 23 May 2019 09:36:48 +0000 (11:36 +0200)]
adapt IdNamespace predicate a bit #8294
Patrick Plitzner [Wed, 22 May 2019 11:58:29 +0000 (13:58 +0200)]
ref #6774 Bidirectional linking of terms and vocabularies
Patrick Plitzner [Wed, 22 May 2019 11:43:15 +0000 (13:43 +0200)]
ref #6774 Add util class for static methods
Patrick Plitzner [Wed, 22 May 2019 10:04:27 +0000 (12:04 +0200)]
Set vocabulary DTO when creating a term DTO
Patrick Plitzner [Tue, 21 May 2019 17:34:20 +0000 (19:34 +0200)]
ref #6774 Refactor term tree export
- unify resource creation methods
Patrick Plitzner [Tue, 21 May 2019 17:19:53 +0000 (19:19 +0200)]
ref #6774 Implement term vocabulary OWL export (partially)
Patrick Plitzner [Tue, 21 May 2019 17:13:19 +0000 (19:13 +0200)]
ref #6774 Use term node uuid for node resource
Andreas Kohlbecker [Wed, 22 May 2019 06:47:39 +0000 (08:47 +0200)]
ref #8252 preserving section authors and better title compentation
Andreas Müller [Tue, 21 May 2019 20:15:57 +0000 (22:15 +0200)]
add some term uuids to E+M import
Andreas Müller [Tue, 21 May 2019 20:10:27 +0000 (22:10 +0200)]
ref #8286 add centimeter to MeasurementUnit
Andreas Müller [Sun, 19 May 2019 07:22:26 +0000 (09:22 +0200)]
ref #8189 adapt tests for ConfigFileUtilTest
Patrick Plitzner [Tue, 21 May 2019 12:59:21 +0000 (14:59 +0200)]
ref #6774 Refactor OWL export
- move OWL model to export state
Katja Luther [Tue, 21 May 2019 10:16:11 +0000 (12:16 +0200)]
minor
Katja Luther [Tue, 21 May 2019 08:16:49 +0000 (10:16 +0200)]
fix sortindex for root nodes and harmonize column names
Katja Luther [Tue, 21 May 2019 08:12:30 +0000 (10:12 +0200)]
add check for dna data
Andreas Kohlbecker [Mon, 20 May 2019 10:35:01 +0000 (12:35 +0200)]
ref #7966 preparing web service contollers to search for NULL type status via UUID parameter
Andreas Kohlbecker [Fri, 17 May 2019 14:02:57 +0000 (16:02 +0200)]
fixing NPE in TypeDesignationStatusFilter processing when '- none -' is selected
Andreas Kohlbecker [Fri, 17 May 2019 12:45:20 +0000 (14:45 +0200)]
fixing wording in logging
Andreas Kohlbecker [Fri, 17 May 2019 12:44:28 +0000 (14:44 +0200)]
fix #8279 avoiding ClassCastExceptin in CdmUserHelper
Andreas Müller [Fri, 17 May 2019 12:28:36 +0000 (14:28 +0200)]
revert commit
e358ae186 and adapt return type
Andreas Müller [Fri, 17 May 2019 11:02:01 +0000 (13:02 +0200)]
add E+M common name area voc uuid
Andreas Müller [Fri, 17 May 2019 11:01:10 +0000 (13:01 +0200)]
ref #8189 fix user.home in AccountStore
Andreas Müller [Fri, 17 May 2019 10:59:56 +0000 (12:59 +0200)]
use state in getVocabulary
Andreas Müller [Thu, 16 May 2019 07:09:59 +0000 (09:09 +0200)]
fix findTitleCache in service layer
Andreas Müller [Thu, 16 May 2019 07:08:29 +0000 (09:08 +0200)]
ref #7470 preliminary set text to transient in TextualTypeDesignation
Andreas Müller [Thu, 16 May 2019 04:38:02 +0000 (06:38 +0200)]
make referenceTitleCache index consistent
Andreas Müller [Thu, 16 May 2019 04:37:15 +0000 (06:37 +0200)]
ref #7470 preliminary set isVerbatim to transient in TextualTypeDesignation
Andreas Müller [Wed, 15 May 2019 12:57:14 +0000 (14:57 +0200)]
ref #7470 add TextualTypeDesignation.isVerbatim to test schemas
Andreas Müller [Wed, 15 May 2019 12:25:31 +0000 (14:25 +0200)]
ref #7470 add TextualTypeDesignation to hibernate.cfg
Patrick Plitzner [Wed, 15 May 2019 06:55:08 +0000 (08:55 +0200)]
ref #6774 Export term vocabulary for each term
Patrick Plitzner [Wed, 15 May 2019 06:07:33 +0000 (08:07 +0200)]
ref #6774 Refactor export for multiple term trees
Andreas Müller [Mon, 13 May 2019 18:18:55 +0000 (20:18 +0200)]
minor
Katja Luther [Mon, 13 May 2019 07:58:01 +0000 (09:58 +0200)]
fix #8264: add published to synonym table