Andreas Müller [Tue, 24 Mar 2015 21:17:01 +0000 (21:17 +0000)]
handle empty Shift #4734
Andreas Müller [Tue, 24 Mar 2015 10:57:12 +0000 (10:57 +0000)]
merge validation commits r23146, r23162, r23163 into trunk
Andreas Müller [Tue, 24 Mar 2015 10:35:07 +0000 (10:35 +0000)]
merge r23161 into trunk
Andreas Müller [Tue, 24 Mar 2015 10:31:30 +0000 (10:31 +0000)]
merge r23145 into trunk
edit-jenkins [Tue, 24 Mar 2015 09:42:06 +0000 (09:42 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Tue, 24 Mar 2015 09:42:00 +0000 (09:42 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.5.0
Andreas Kohlbecker [Tue, 24 Mar 2015 09:18:14 +0000 (09:18 +0000)]
decoupling version of cdm-vaadin, to solve problems in the maven release:prepare phase
Andreas Kohlbecker [Tue, 24 Mar 2015 09:18:12 +0000 (09:18 +0000)]
ignoring .settings
edit-jenkins [Mon, 23 Mar 2015 17:06:17 +0000 (17:06 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Mon, 23 Mar 2015 17:06:16 +0000 (17:06 +0000)]
[maven-release-plugin] prepare release cdmlib-commons-3.5.0
Andreas Müller [Mon, 23 Mar 2015 15:55:43 +0000 (15:55 +0000)]
add Transient to getNullSafe methods and make MarkerType not null Level2 rule
Alexander Oppermann [Mon, 23 Mar 2015 14:30:32 +0000 (14:30 +0000)]
Improved parser for zoological names...
Andreas Müller [Mon, 23 Mar 2015 12:24:34 +0000 (12:24 +0000)]
minor
Andreas Müller [Mon, 23 Mar 2015 12:15:31 +0000 (12:15 +0000)]
fix bug in update script
Andreas Müller [Fri, 20 Mar 2015 21:14:41 +0000 (21:14 +0000)]
minor
Andreas Müller [Fri, 20 Mar 2015 21:14:01 +0000 (21:14 +0000)]
unignore edit geoservice test
Andreas Müller [Fri, 20 Mar 2015 15:17:03 +0000 (15:17 +0000)]
add listener for taxon name in determination event and run update script again
Andreas Müller [Fri, 20 Mar 2015 14:23:44 +0000 (14:23 +0000)]
minor
Andreas Müller [Fri, 20 Mar 2015 14:19:48 +0000 (14:19 +0000)]
update test H2 in remote webapp
Andreas Müller [Fri, 20 Mar 2015 14:01:00 +0000 (14:01 +0000)]
fix test environment for Identifier being Annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 14:00:14 +0000 (14:00 +0000)]
further fixes for collectorTitle #4311
Andreas Müller [Fri, 20 Mar 2015 13:41:29 +0000 (13:41 +0000)]
fixing persistence tests on AgentBase.collectorTitle #4311
Andreas Müller [Fri, 20 Mar 2015 13:26:12 +0000 (13:26 +0000)]
add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311
Andreas Müller [Fri, 20 Mar 2015 12:55:50 +0000 (12:55 +0000)]
update named area idInVocabularies if necessary #4140
Andreas Müller [Fri, 20 Mar 2015 12:32:36 +0000 (12:32 +0000)]
make identifier annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 12:12:40 +0000 (12:12 +0000)]
make identifier annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 10:34:58 +0000 (10:34 +0000)]
minor
Andreas Müller [Fri, 20 Mar 2015 10:32:59 +0000 (10:32 +0000)]
update script for orphaned taxon node removal #2341
Andreas Müller [Thu, 19 Mar 2015 23:46:37 +0000 (23:46 +0000)]
update cdmlib poms from 3.4.1-SNAPSHOT to 3.5.0-SNAPSHOT
Andreas Müller [Thu, 19 Mar 2015 15:30:43 +0000 (15:30 +0000)]
adapt CommonService to allow collection save and add remotewebapp test H2 udpate
Andreas Müller [Thu, 19 Mar 2015 14:33:45 +0000 (14:33 +0000)]
updated cdmTest in remote webapp to new model
Andreas Müller [Thu, 19 Mar 2015 13:56:37 +0000 (13:56 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:56:19 +0000 (13:56 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:53:07 +0000 (13:53 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:49:54 +0000 (13:49 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:45:29 +0000 (13:45 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:29:30 +0000 (13:29 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:28:13 +0000 (13:28 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:24:42 +0000 (13:24 +0000)]
merge validation2 and model 3.5 into trunk
Patric Plitzner [Wed, 18 Mar 2015 08:35:15 +0000 (08:35 +0000)]
- added option to cancel import
Patric Plitzner [Tue, 17 Mar 2015 17:07:23 +0000 (17:07 +0000)]
- avoid duplicate taxon nodes in default classification
Patric Plitzner [Tue, 17 Mar 2015 17:06:22 +0000 (17:06 +0000)]
- added test file
Andreas Müller [Tue, 17 Mar 2015 14:55:23 +0000 (14:55 +0000)]
remove import
Patric Plitzner [Tue, 17 Mar 2015 13:26:07 +0000 (13:26 +0000)]
- refactored code
Patric Plitzner [Tue, 17 Mar 2015 13:19:46 +0000 (13:19 +0000)]
- enhanced progress monitor
Patric Plitzner [Tue, 17 Mar 2015 13:07:10 +0000 (13:07 +0000)]
- enhanced progress monitor
- fixed multiple default classification creation
Patric Plitzner [Tue, 17 Mar 2015 12:36:02 +0000 (12:36 +0000)]
- fixed potential NPE
Patric Plitzner [Tue, 17 Mar 2015 11:46:38 +0000 (11:46 +0000)]
- fixed taxon node matching for default classification
Katja Luther [Tue, 17 Mar 2015 10:35:55 +0000 (10:35 +0000)]
fix search for common names in editor and minor
Patric Plitzner [Tue, 17 Mar 2015 10:04:50 +0000 (10:04 +0000)]
- added new test cases (still temporarily @Ignore)
Patric Plitzner [Tue, 17 Mar 2015 10:03:29 +0000 (10:03 +0000)]
- fixed potential NPE
Patric Plitzner [Mon, 16 Mar 2015 20:10:48 +0000 (20:10 +0000)]
- fixed potential NPE when adding taxon nodes for infra species
Patric Plitzner [Mon, 16 Mar 2015 15:49:24 +0000 (15:49 +0000)]
- some code speed up
- better default classification handling
Patric Plitzner [Mon, 16 Mar 2015 14:26:29 +0000 (14:26 +0000)]
- fixed adding to default classification
Patric Plitzner [Mon, 16 Mar 2015 14:03:53 +0000 (14:03 +0000)]
- temporarily added test to ignore
Patric Plitzner [Mon, 16 Mar 2015 13:50:38 +0000 (13:50 +0000)]
- implemented new config option "Move new taxa to default classification"
Patric Plitzner [Mon, 16 Mar 2015 13:18:45 +0000 (13:18 +0000)]
- added new config option "Move new taxa to default classification"
- do not add associations for identifications with preferredFlag=false
Patric Plitzner [Mon, 16 Mar 2015 09:10:53 +0000 (09:10 +0000)]
- enhanced report
Patric Plitzner [Mon, 16 Mar 2015 08:58:56 +0000 (08:58 +0000)]
- enhanced ggbn parsing
- enhanced report
Patric Plitzner [Thu, 12 Mar 2015 19:57:10 +0000 (19:57 +0000)]
- added test to ignore temporarily
Patric Plitzner [Thu, 12 Mar 2015 18:53:14 +0000 (18:53 +0000)]
- added test to ignore temporarily
Patric Plitzner [Thu, 12 Mar 2015 18:20:38 +0000 (18:20 +0000)]
- fixed rank parsing
- added deprecate annotation to config option
Andreas Müller [Thu, 12 Mar 2015 16:03:58 +0000 (16:03 +0000)]
switching label and text in IdentifierType
Andreas Müller [Thu, 12 Mar 2015 15:55:54 +0000 (15:55 +0000)]
last updates to eFlora import
Andreas Müller [Thu, 12 Mar 2015 15:53:21 +0000 (15:53 +0000)]
add LSID and Alternative field number to Identifier Type vocabulary #4708, #4674
Patric Plitzner [Thu, 12 Mar 2015 15:07:23 +0000 (15:07 +0000)]
- temp changes for name matching
Katja Luther [Thu, 12 Mar 2015 11:20:27 +0000 (11:20 +0000)]
moveTaxon() with uuids instead of objects as arguments
Patric Plitzner [Wed, 11 Mar 2015 15:17:10 +0000 (15:17 +0000)]
- some name matching enhancements
Patric Plitzner [Wed, 11 Mar 2015 12:42:00 +0000 (12:42 +0000)]
- reverted comment of test
Patric Plitzner [Wed, 11 Mar 2015 09:50:03 +0000 (09:50 +0000)]
- added info messages to report
- enhanced taxon name matching
Andreas Müller [Tue, 10 Mar 2015 16:49:32 +0000 (16:49 +0000)]
latest updates to FotG import
Andreas Müller [Tue, 10 Mar 2015 13:42:07 +0000 (13:42 +0000)]
type removed from SpecimenTypeParser
Andreas Müller [Tue, 10 Mar 2015 13:39:14 +0000 (13:39 +0000)]
update to Markup import
Andreas Müller [Tue, 10 Mar 2015 10:31:12 +0000 (10:31 +0000)]
minor
Katja Luther [Tue, 10 Mar 2015 10:17:29 +0000 (10:17 +0000)]
Katja Luther [Tue, 10 Mar 2015 09:53:15 +0000 (09:53 +0000)]
Katja Luther [Tue, 10 Mar 2015 09:36:26 +0000 (09:36 +0000)]
Katja Luther [Tue, 10 Mar 2015 09:06:45 +0000 (09:06 +0000)]
for infrageneric unranked rank adding [unranked] (Art.37.7 Melbourne Code)
fixing bug with deletion of names and homotypicalGroups
Patric Plitzner [Thu, 5 Mar 2015 13:05:01 +0000 (13:05 +0000)]
- fixed name matching when ignoring authorship
Patric Plitzner [Wed, 4 Mar 2015 16:06:22 +0000 (16:06 +0000)]
- fixed getTaxonForName()
Patric Plitzner [Wed, 4 Mar 2015 15:35:06 +0000 (15:35 +0000)]
- added removeCountryFromLocalityText option to configurator (basically implementing the hack #4677)
Patric Plitzner [Wed, 4 Mar 2015 13:51:11 +0000 (13:51 +0000)]
- shortened regex
Patric Plitzner [Wed, 4 Mar 2015 13:34:32 +0000 (13:34 +0000)]
- fixed temporary geolocation hack
Patric Plitzner [Wed, 4 Mar 2015 13:00:16 +0000 (13:00 +0000)]
- fixed java doc
Patric Plitzner [Wed, 4 Mar 2015 11:30:18 +0000 (11:30 +0000)]
- fixed name matching when ignoring author
Patric Plitzner [Wed, 4 Mar 2015 10:36:51 +0000 (10:36 +0000)]
- re-added temporary hack
Patric Plitzner [Wed, 4 Mar 2015 09:45:01 +0000 (09:45 +0000)]
- removed temporary hack
Patric Plitzner [Wed, 4 Mar 2015 09:44:25 +0000 (09:44 +0000)]
- fixed mapUnitIdToBarcode
- fixed NPE for name parsing
Patric Plitzner [Wed, 4 Mar 2015 07:46:33 +0000 (07:46 +0000)]
- added config option to choose mapping of ABCD UnitID
- added config option to ignore authorship when matching taxa
- added first draft of ggbn extension parsing
Patric Plitzner [Tue, 3 Mar 2015 14:18:19 +0000 (14:18 +0000)]
- added ignoreAuthorship flag to ABCD import
- when set to true taxon name matching will be done without the the authorship just on the nameCache of the NonViralName
Patric Plitzner [Tue, 3 Mar 2015 13:31:13 +0000 (13:31 +0000)]
- reset all relevant dataholder fields for every unit
Patric Plitzner [Tue, 3 Mar 2015 13:28:45 +0000 (13:28 +0000)]
- added methods to handle identifiers
Patric Plitzner [Tue, 3 Mar 2015 11:46:54 +0000 (11:46 +0000)]
- fixed java doc
Andreas Müller [Mon, 2 Mar 2015 13:47:44 +0000 (13:47 +0000)]
latest changes for Markup import
Andreas Müller [Mon, 2 Mar 2015 12:38:22 +0000 (12:38 +0000)]
latest changes for Markup import
Andreas Müller [Mon, 2 Mar 2015 12:37:15 +0000 (12:37 +0000)]
add NewInstance for Names in Determination Event
Andreas Müller [Fri, 27 Feb 2015 12:50:29 +0000 (12:50 +0000)]
adadpt TimePeriodParser to include lifespan
Andreas Müller [Fri, 27 Feb 2015 10:40:26 +0000 (10:40 +0000)]
minor
Andreas Müller [Wed, 25 Feb 2015 22:11:37 +0000 (22:11 +0000)]
add some doubtful taxon relationships tom BM transformer
Katja Luther [Mon, 23 Feb 2015 09:24:48 +0000 (09:24 +0000)]