cdmlib.git
2 years agoref #9359 update javadoc related plugin versions in cdmlib
Andreas Müller [Sat, 15 Jan 2022 16:24:44 +0000 (17:24 +0100)]
ref #9359 update javadoc related plugin versions in cdmlib

2 years agoref #9359 update cobertura-maven-plugin and checker-qual to latest version in cdmlib
Andreas Müller [Sat, 15 Jan 2022 15:49:54 +0000 (16:49 +0100)]
ref #9359 update cobertura-maven-plugin and checker-qual to latest version in cdmlib

2 years agoref #9359 update maven-eclipse-pluginin, com.jcraft/jsch and org.osgi/osgi.core in...
Andreas Müller [Sat, 15 Jan 2022 15:41:33 +0000 (16:41 +0100)]
ref #9359 update maven-eclipse-pluginin, com.jcraft/jsch and org.osgi/osgi.core in cdmlib

2 years agoref #9359 update maven-enforcer-plugin and subsequently add some further version...
Andreas Müller [Sat, 15 Jan 2022 15:37:18 +0000 (16:37 +0100)]
ref #9359 update maven-enforcer-plugin and subsequently add some further version controls in cdmlib

2 years agocleanup
Andreas Müller [Sat, 15 Jan 2022 15:03:27 +0000 (16:03 +0100)]
cleanup

2 years agoref #9359 update jgitflow-maven-plugin from 1.0-m6 to latest 1.0-m8 with new groupId...
Andreas Müller [Sat, 15 Jan 2022 14:14:24 +0000 (15:14 +0100)]
ref #9359 update jgitflow-maven-plugin from 1.0-m6 to latest 1.0-m8 with new groupId in cdmlib

2 years agoref #9359 update maven-site-plugin from 3.3 to 3.10.0 in cdmlib
Andreas Müller [Sat, 15 Jan 2022 14:12:23 +0000 (15:12 +0100)]
ref #9359 update maven-site-plugin from 3.3 to 3.10.0 in cdmlib

2 years agoref #9359 revert update maven-compiler-plugin to first 3.x (3.0) version in cdmlib
Andreas Müller [Sat, 15 Jan 2022 14:05:36 +0000 (15:05 +0100)]
ref #9359 revert update maven-compiler-plugin to first 3.x (3.0) version in cdmlib

2 years agoref #9359 update maven-compiler-plugin to first 3.x (3.0) version in cdmlib
Andreas Müller [Sat, 15 Jan 2022 13:49:05 +0000 (14:49 +0100)]
ref #9359 update maven-compiler-plugin to first 3.x (3.0) version in cdmlib

2 years agoref #9359 update maven-compiler-plugin to latest 2.x (2.5.1) versions in cdmlib
Andreas Müller [Sat, 15 Jan 2022 13:07:22 +0000 (14:07 +0100)]
ref #9359 update maven-compiler-plugin to latest 2.x (2.5.1) versions in cdmlib

2 years agoref #9359 revert update maven-compiler-plugin in cdmlib
Andreas Müller [Sat, 15 Jan 2022 12:51:36 +0000 (13:51 +0100)]
ref #9359 revert update maven-compiler-plugin  in cdmlib

2 years agoref #9359 update maven-compiler-plugin and buildnumber-maven-plugin to latest version...
Andreas Müller [Sat, 15 Jan 2022 12:27:07 +0000 (13:27 +0100)]
ref #9359 update maven-compiler-plugin and buildnumber-maven-plugin to latest versions in cdmlib

2 years agoref #9359 update maven-failsafe-plugin to latest 2.22.2 in cdmlib-remote-webapp
Andreas Müller [Sat, 15 Jan 2022 11:23:27 +0000 (12:23 +0100)]
ref #9359 update maven-failsafe-plugin to latest 2.22.2 in cdmlib-remote-webapp

2 years agoremove project.version from managed cdmlib-test in cdmlib-remote
Andreas Müller [Sat, 15 Jan 2022 11:21:45 +0000 (12:21 +0100)]
remove project.version from managed cdmlib-test in cdmlib-remote

2 years agoref #9359 update maven-bundle-plugin to latest 5.1.4 in cdmlib
Andreas Müller [Sat, 15 Jan 2022 11:20:09 +0000 (12:20 +0100)]
ref #9359 update maven-bundle-plugin to latest 5.1.4 in cdmlib

2 years agoremove project.version from managed cdmlib-test
Andreas Müller [Sat, 15 Jan 2022 11:19:23 +0000 (12:19 +0100)]
remove project.version from managed cdmlib-test

2 years agoref #9359 update maven-jar-plugin to 3.2.2 in cdmlib
Andreas Müller [Sat, 15 Jan 2022 10:44:32 +0000 (11:44 +0100)]
ref #9359 update maven-jar-plugin to 3.2.2 in cdmlib

2 years agoremove commented versions from cdmlib-db
Andreas Müller [Sat, 15 Jan 2022 10:41:00 +0000 (11:41 +0100)]
remove commented versions from cdmlib-db

2 years agoref #9359 update org.apache.maven.scm extension to latest 1.12.2 in cdmlib
Andreas Müller [Sat, 15 Jan 2022 00:53:05 +0000 (01:53 +0100)]
ref #9359 update org.apache.maven.scm extension to latest 1.12.2 in cdmlib

2 years agoref #9359 update wagon-maven-plugin to latest 2.0.2 in cdmlib
Andreas Müller [Fri, 14 Jan 2022 23:40:10 +0000 (00:40 +0100)]
ref #9359 update wagon-maven-plugin to latest 2.0.2 in cdmlib

2 years agoref #9359 update org.apache.maven.wagon extensions to latest 3.5.1 in cdmlib
Andreas Müller [Fri, 14 Jan 2022 23:32:17 +0000 (00:32 +0100)]
ref #9359 update org.apache.maven.wagon extensions to latest 3.5.1 in cdmlib

2 years agofix pluginManagement for m2e in cdmlib-model and -test
Andreas Müller [Fri, 14 Jan 2022 21:10:30 +0000 (22:10 +0100)]
fix pluginManagement for m2e in cdmlib-model and -test

2 years agominor
Andreas Müller [Fri, 14 Jan 2022 20:41:52 +0000 (21:41 +0100)]
minor

2 years agoadd pluginManagement tag to avoid error for <execution> tag
Andreas Müller [Fri, 14 Jan 2022 20:14:33 +0000 (21:14 +0100)]
add pluginManagement tag to avoid error for <execution> tag

2 years agoremove commented version from dependencies in cdmlib-db
Andreas Müller [Fri, 14 Jan 2022 20:13:22 +0000 (21:13 +0100)]
remove commented version from dependencies in cdmlib-db

2 years agoset default source mode for distribution aggregation from child to parent to NONE
Andreas Müller [Wed, 12 Jan 2022 23:14:19 +0000 (00:14 +0100)]
set default source mode for distribution aggregation from child to parent to NONE

2 years agoref #9359 revert update hsqldb in cdmlib (cont.)
Andreas Müller [Wed, 12 Jan 2022 22:51:28 +0000 (23:51 +0100)]
ref #9359 revert update hsqldb in cdmlib (cont.)

2 years agoref #9359 revert update hsqldb in cdmlib
Andreas Müller [Wed, 12 Jan 2022 22:49:12 +0000 (23:49 +0100)]
ref #9359 revert update hsqldb in cdmlib

2 years agoref #9359 update plexus-utils in cdmlib (fix compile error)
Andreas Müller [Wed, 12 Jan 2022 20:41:13 +0000 (21:41 +0100)]
ref #9359 update plexus-utils in cdmlib (fix compile error)

2 years agoref #9359 update aspectj in cdmlib
Andreas Müller [Wed, 12 Jan 2022 20:00:06 +0000 (21:00 +0100)]
ref #9359 update aspectj in cdmlib

2 years agoref #9359 update plexus-utils in cdmlib
Andreas Müller [Wed, 12 Jan 2022 19:55:33 +0000 (20:55 +0100)]
ref #9359 update plexus-utils in cdmlib

2 years agoref #9359 update hsqldb in cdmlib
Andreas Müller [Wed, 12 Jan 2022 19:52:45 +0000 (20:52 +0100)]
ref #9359 update hsqldb in cdmlib

2 years agoref #9359 update xercesImpl in cdmlib
Andreas Müller [Wed, 12 Jan 2022 19:42:25 +0000 (20:42 +0100)]
ref #9359 update xercesImpl in cdmlib

2 years agoref #9359 update mysql, postgresql and mssql in cdmlib
Andreas Müller [Wed, 12 Jan 2022 19:40:27 +0000 (20:40 +0100)]
ref #9359 update mysql, postgresql and mssql in cdmlib

2 years agoref #9359 update xmlgraphics-commons (only needed in cdmlib-print)
Andreas Müller [Wed, 12 Jan 2022 19:34:10 +0000 (20:34 +0100)]
ref #9359 update xmlgraphics-commons (only needed in cdmlib-print)

2 years agominor
Andreas Müller [Wed, 12 Jan 2022 19:28:11 +0000 (20:28 +0100)]
minor

2 years agoref #9914 add space before seriesPart in nom.refs.
Andreas Müller [Wed, 12 Jan 2022 14:45:00 +0000 (15:45 +0100)]
ref #9914 add space before seriesPart in nom.refs.

2 years agoupgrading media-info-model to latest version 1.2.0
Andreas Kohlbecker [Mon, 10 Jan 2022 10:45:28 +0000 (11:45 +0100)]
upgrading media-info-model to latest version 1.2.0

2 years agominor
Andreas Müller [Fri, 7 Jan 2022 09:57:10 +0000 (10:57 +0100)]
minor

2 years agoref #9607 try metadata reading client side if error occurs server side
Andreas Müller [Wed, 5 Jan 2022 13:24:22 +0000 (14:24 +0100)]
ref #9607 try metadata reading client side if error occurs server side

2 years agoref #9895: fix MRE when moving synonym to an already open taxon
Katja Luther [Tue, 4 Jan 2022 13:47:14 +0000 (14:47 +0100)]
ref #9895: fix MRE when moving synonym to an already open taxon

2 years agoref #9907: fix missing treeIndex in taxonNodeDto - continue
Katja Luther [Tue, 4 Jan 2022 13:15:37 +0000 (14:15 +0100)]
ref #9907: fix missing treeIndex in taxonNodeDto - continue

2 years agoref #9907: fix missing treeIndex in taxonNodeDto
Katja Luther [Tue, 4 Jan 2022 12:45:43 +0000 (13:45 +0100)]
ref #9907: fix missing treeIndex in taxonNodeDto

2 years agoref #9359 update ant version in cdmlib
Andreas Müller [Mon, 3 Jan 2022 14:04:34 +0000 (15:04 +0100)]
ref #9359 update ant version in cdmlib

2 years agominor
Andreas Müller [Mon, 3 Jan 2022 13:53:59 +0000 (14:53 +0100)]
minor

2 years agoref #9359 update doxia, objenesis, iiif-apis, xom, Saxon-HE and javassist version...
Andreas Müller [Mon, 3 Jan 2022 13:52:47 +0000 (14:52 +0100)]
ref #9359 update doxia, objenesis, iiif-apis, xom, Saxon-HE and javassist version in cdmlib

2 years agoref #9359 update httpcore version in cdmlib
Andreas Müller [Mon, 3 Jan 2022 13:40:12 +0000 (14:40 +0100)]
ref #9359 update httpcore version in cdmlib

2 years agofix #9904 avoiding null value for RegistrationDT0.summaryTaggedText
Andreas Kohlbecker [Thu, 23 Dec 2021 09:51:15 +0000 (10:51 +0100)]
fix #9904 avoiding null value for RegistrationDT0.summaryTaggedText

2 years agoref #9359 updating junit and joda-time to latest version in cdmlib
Andreas Müller [Tue, 21 Dec 2021 22:22:02 +0000 (23:22 +0100)]
ref #9359 updating junit and joda-time to latest version in cdmlib

2 years agoref #9359 updating commons-lang3 to latest version in cdmlib
Andreas Müller [Tue, 21 Dec 2021 22:07:03 +0000 (23:07 +0100)]
ref #9359 updating commons-lang3 to latest version in cdmlib

2 years agoref #9359 updating jackson, dozer, fop and guava to latest version in cdmlib
Andreas Müller [Tue, 21 Dec 2021 22:01:26 +0000 (23:01 +0100)]
ref #9359 updating jackson, dozer, fop and guava to latest version in cdmlib

2 years agoref #9359 update spring security OAuth2 to 2.5.1 in cdmlib
Andreas Müller [Tue, 21 Dec 2021 21:24:54 +0000 (22:24 +0100)]
ref #9359 update spring security OAuth2 to 2.5.1 in cdmlib

2 years agoupdate organizationURL
Andreas Müller [Tue, 21 Dec 2021 21:23:55 +0000 (22:23 +0100)]
update organizationURL

2 years agoref #9359 update spring to 4.3.30 in cdmlib
Andreas Müller [Tue, 21 Dec 2021 20:50:38 +0000 (21:50 +0100)]
ref #9359 update spring to 4.3.30 in cdmlib

2 years agocleanup
Andreas Müller [Tue, 21 Dec 2021 17:12:08 +0000 (18:12 +0100)]
cleanup

2 years agoref #9359 httpcomponents to 4.5.13 and spring-security to 4.2.20 in cdmlib
Andreas Müller [Tue, 21 Dec 2021 17:11:56 +0000 (18:11 +0100)]
ref #9359 httpcomponents to 4.5.13 and spring-security to 4.2.20 in cdmlib

2 years agoref #9359 update commons-compress to 1.21
Andreas Müller [Tue, 21 Dec 2021 16:57:53 +0000 (17:57 +0100)]
ref #9359 update commons-compress to 1.21

2 years agoref #9607 remove redundant method in IMediaInfoFactory
Andreas Müller [Fri, 17 Dec 2021 22:53:42 +0000 (23:53 +0100)]
ref #9607 remove redundant method in IMediaInfoFactory

2 years agocleanup
Andreas Müller [Fri, 17 Dec 2021 22:48:40 +0000 (23:48 +0100)]
cleanup

2 years agofix exception in delete of specimen
Katja Luther [Thu, 16 Dec 2021 12:51:11 +0000 (13:51 +0100)]
fix exception in delete of specimen

2 years agoremove PermSize from cdmlib-remote-webapp launchers
Andreas Müller [Wed, 15 Dec 2021 13:31:33 +0000 (14:31 +0100)]
remove PermSize from cdmlib-remote-webapp launchers

2 years agoadd ExcelSpecimenImportTemplate.xlsx
Andreas Müller [Wed, 15 Dec 2021 13:23:56 +0000 (14:23 +0100)]
add ExcelSpecimenImportTemplate.xlsx

2 years agoref #9896 adding missing AnnotationDTO class
Andreas Kohlbecker [Fri, 10 Dec 2021 15:50:59 +0000 (16:50 +0100)]
ref  #9896 adding missing AnnotationDTO class

2 years agoadding again full ReferenceDTO to SourceDTO as the data portal needs more data
Andreas Kohlbecker [Fri, 10 Dec 2021 15:38:42 +0000 (16:38 +0100)]
adding again full ReferenceDTO to SourceDTO as the data portal needs more data

2 years agofix #9896 DerivedUnitDTO with complete set of annotationDTOs
Andreas Kohlbecker [Fri, 10 Dec 2021 14:22:05 +0000 (15:22 +0100)]
fix #9896 DerivedUnitDTO with complete set of annotationDTOs

2 years agousing the derivedUnit.titleCache as DerivedUnitDTO.summaryLabel
Andreas Kohlbecker [Thu, 9 Dec 2021 14:04:17 +0000 (15:04 +0100)]
using the derivedUnit.titleCache as DerivedUnitDTO.summaryLabel

2 years agoref #6161 improving method timing for callers & reporting reporting email not found
Andreas Kohlbecker [Mon, 6 Dec 2021 16:15:51 +0000 (17:15 +0100)]
ref #6161 improving method timing for callers & reporting reporting email not found

2 years agocleanup
Andreas Müller [Thu, 2 Dec 2021 21:33:43 +0000 (22:33 +0100)]
cleanup

2 years agoref #9809 include new authors in result.
Andreas Müller [Thu, 2 Dec 2021 16:08:34 +0000 (17:08 +0100)]
ref #9809 include new authors in result.

2 years agoref #9809 remove first "line" form source reference detail
Andreas Müller [Thu, 2 Dec 2021 16:04:07 +0000 (17:04 +0100)]
ref #9809 remove first "line" form source reference detail

2 years agoref #9809 add the source reference to newly added authors
Andreas Müller [Thu, 2 Dec 2021 16:03:12 +0000 (17:03 +0100)]
ref #9809 add the source reference to newly added authors

2 years agoref #9889 add direct matching on persistence to deduplication helper and replace...
Andreas Müller [Thu, 2 Dec 2021 14:20:41 +0000 (15:20 +0100)]
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont. II)

2 years agoref #9889 add direct matching on persistence to deduplication helper and replace...
Andreas Müller [Thu, 2 Dec 2021 13:58:21 +0000 (14:58 +0100)]
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont.)

2 years agoref #9889 add direct matching on persistence to deduplication helper and replace...
Andreas Müller [Thu, 2 Dec 2021 13:18:25 +0000 (14:18 +0100)]
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference

2 years agoref #9890 make the configuration of the ImportDeduplicationHelper configurable per...
Andreas Müller [Wed, 1 Dec 2021 13:07:30 +0000 (14:07 +0100)]
ref #9890 make the configuration of the ImportDeduplicationHelper configurable per import class by overriding factory method

2 years agoref #9861: featurestate save with dto
Katja Luther [Wed, 1 Dec 2021 13:54:12 +0000 (14:54 +0100)]
ref #9861: featurestate save with dto

2 years agoref #9861: termtree contains map with applicable informations
Katja Luther [Wed, 1 Dec 2021 12:52:28 +0000 (13:52 +0100)]
ref #9861: termtree contains map with applicable informations

2 years agoref #9861: termnode contains featurestate as dto
Katja Luther [Wed, 1 Dec 2021 08:21:15 +0000 (09:21 +0100)]
ref #9861: termnode contains featurestate as dto

2 years agoref #9890 move importDeduplicationHelper to import state and include state in helper...
Andreas Müller [Tue, 30 Nov 2021 12:48:05 +0000 (13:48 +0100)]
ref #9890 move importDeduplicationHelper to import state and include state in helper (cont.)

2 years agocleanup
Andreas Müller [Tue, 30 Nov 2021 12:14:58 +0000 (13:14 +0100)]
cleanup

2 years agoref #9890 move importDeduplicationHelper to import state and include state in helper...
Andreas Müller [Tue, 30 Nov 2021 12:14:14 +0000 (13:14 +0100)]
ref #9890 move importDeduplicationHelper to import state and include state in helper (state not yet used in methods)

2 years agocleanup
Andreas Müller [Mon, 29 Nov 2021 22:15:13 +0000 (23:15 +0100)]
cleanup

2 years agoref #9888 add book section handling to RIS import
Andreas Müller [Mon, 29 Nov 2021 22:14:52 +0000 (23:14 +0100)]
ref #9888 add book section handling to RIS import

2 years agoref #9359 update commons-io to 2.11.0 in cdmlib
Andreas Müller [Mon, 29 Nov 2021 14:51:42 +0000 (15:51 +0100)]
ref #9359 update commons-io to 2.11.0 in cdmlib

2 years agoref #9887 add documentation to required json-lib jdk classifier in cdmlib
Andreas Müller [Mon, 29 Nov 2021 12:53:19 +0000 (13:53 +0100)]
ref #9887 add documentation to required json-lib jdk classifier in cdmlib

2 years agominor
Andreas Müller [Mon, 29 Nov 2021 11:56:39 +0000 (12:56 +0100)]
minor

2 years agoref #9388 adding sources to MediaDTO
Andreas Kohlbecker [Fri, 26 Nov 2021 16:36:28 +0000 (17:36 +0100)]
ref #9388 adding sources to MediaDTO

2 years agocode cleaning
Andreas Kohlbecker [Fri, 26 Nov 2021 16:35:54 +0000 (17:35 +0100)]
code cleaning

2 years agocleanup
Andreas Müller [Fri, 26 Nov 2021 14:48:51 +0000 (15:48 +0100)]
cleanup

2 years agoref #9886 first implementation for cdmlib-api with only UuidAndTitleCache moved to...
Andreas Müller [Fri, 26 Nov 2021 13:51:48 +0000 (14:51 +0100)]
ref #9886 first implementation for cdmlib-api with only UuidAndTitleCache moved to new module

2 years agoref #824 remove test (testRankByNameConsistency_issue824) and cleanup
Andreas Müller [Fri, 26 Nov 2021 11:02:28 +0000 (12:02 +0100)]
ref #824 remove test (testRankByNameConsistency_issue824) and cleanup

2 years agoref #824 adapt app-import to rank.getByLatinName (cont.)
Andreas Müller [Thu, 25 Nov 2021 14:54:23 +0000 (15:54 +0100)]
ref #824 adapt app-import to rank.getByLatinName (cont.)

2 years agoref #9878 tagged text crop method
Andreas Kohlbecker [Thu, 25 Nov 2021 14:26:49 +0000 (15:26 +0100)]
ref #9878 tagged text crop method

2 years agodummy
Andreas Müller [Thu, 25 Nov 2021 13:58:10 +0000 (14:58 +0100)]
dummy

2 years agoref #824 rename Rank.getByNameXXX to getByLatinNameXXX
Andreas Müller [Thu, 25 Nov 2021 13:27:35 +0000 (14:27 +0100)]
ref #824 rename Rank.getByNameXXX to getByLatinNameXXX

2 years agoadd explanation why set test to ignore
Katja Luther [Thu, 25 Nov 2021 13:00:25 +0000 (14:00 +0100)]
add explanation why set test to ignore

2 years agocleanup
a.mueller [Thu, 25 Nov 2021 11:39:21 +0000 (12:39 +0100)]
cleanup

2 years agoignore test
Katja Luther [Thu, 25 Nov 2021 11:23:44 +0000 (12:23 +0100)]
ignore test

2 years agoref #9842: adaption in descriptivedataset service
Katja Luther [Thu, 25 Nov 2021 10:49:44 +0000 (11:49 +0100)]
ref #9842: adaption in descriptivedataset service

2 years agoref #824 test to reproduce rankByName consistency issue
Andreas Kohlbecker [Thu, 25 Nov 2021 10:43:45 +0000 (11:43 +0100)]
ref #824 test to reproduce rankByName consistency issue