cdmlib.git
5 years agoref #7597 Implement taxon description aggregation
Patrick Plitzner [Mon, 30 Jul 2018 07:32:39 +0000 (09:32 +0200)]
ref #7597 Implement taxon description aggregation

5 years agocleanup
Andreas Müller [Tue, 7 Aug 2018 13:37:05 +0000 (15:37 +0200)]
cleanup

5 years agoadapt cdm light test to changes
Katja Luther [Mon, 6 Aug 2018 10:30:12 +0000 (12:30 +0200)]
adapt cdm light test to changes

5 years agoadapt tests to changes in biocase impot
Katja Luther [Mon, 6 Aug 2018 09:53:14 +0000 (11:53 +0200)]
adapt tests to changes in biocase impot

5 years agoadd hasImage to biocase import
Katja Luther [Mon, 6 Aug 2018 08:44:20 +0000 (10:44 +0200)]
add hasImage to biocase import

5 years agofix handling of sec reference in cdm light export
Katja Luther [Mon, 6 Aug 2018 08:29:07 +0000 (10:29 +0200)]
fix handling of sec reference in cdm light export

5 years agoref #7590 fixing join types for restriction operations
Andreas Kohlbecker [Fri, 3 Aug 2018 17:45:09 +0000 (19:45 +0200)]
ref #7590 fixing join types for restriction operations

5 years agoref #7611 implementing typeDesignation media service and MediaDTO
Andreas Kohlbecker [Fri, 3 Aug 2018 16:45:03 +0000 (18:45 +0200)]
ref #7611 implementing typeDesignation media service and MediaDTO

5 years agotypo in documentation
Andreas Kohlbecker [Fri, 3 Aug 2018 16:43:45 +0000 (18:43 +0200)]
typo in documentation

5 years agoadd missing loggin to remote controllers
Andreas Kohlbecker [Fri, 3 Aug 2018 14:40:26 +0000 (16:40 +0200)]
add missing loggin to remote controllers

5 years agoref #7591 ReferencePropertyDefinitions adding missing data to 'all'
Andreas Kohlbecker [Fri, 3 Aug 2018 14:39:03 +0000 (16:39 +0200)]
ref #7591 ReferencePropertyDefinitions adding missing data to 'all'

5 years agofixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator...
Andreas Kohlbecker [Fri, 3 Aug 2018 12:55:23 +0000 (14:55 +0200)]
fixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator - test implemented

5 years agoadapt country path in abcd query
Katja Luther [Fri, 3 Aug 2018 10:04:42 +0000 (12:04 +0200)]
adapt country path in abcd query

5 years agoadapt country path in abcd query
Katja Luther [Fri, 3 Aug 2018 09:58:16 +0000 (11:58 +0200)]
adapt country path in abcd query

5 years agofixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator
Andreas Kohlbecker [Fri, 3 Aug 2018 09:53:50 +0000 (11:53 +0200)]
fixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator

5 years agofixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator
Andreas Kohlbecker [Fri, 3 Aug 2018 09:48:35 +0000 (11:48 +0200)]
fixing wrong usage of findByTitle* Method with IIdentifiableEntityServiceConfigurator

5 years agoparse collection date for abcd import
Katja Luther [Fri, 3 Aug 2018 08:30:46 +0000 (10:30 +0200)]
parse collection date for abcd import

5 years agofix collector import if it is a single string value in gatheringAgentsText
Katja Luther [Fri, 3 Aug 2018 07:08:46 +0000 (09:08 +0200)]
fix collector import if it is a single string value in gatheringAgentsText

5 years agocomment regarding #7608 in DerivedUnitFacadeCacheStrategy
Andreas Kohlbecker [Tue, 31 Jul 2018 16:02:17 +0000 (18:02 +0200)]
comment regarding #7608 in DerivedUnitFacadeCacheStrategy

5 years agoref #7608 string representations for media types implemented
Andreas Kohlbecker [Tue, 31 Jul 2018 15:54:27 +0000 (17:54 +0200)]
ref #7608 string representations for media types implemented

5 years agoref #7429 fix date parsing in name parser test
Andreas Müller [Tue, 31 Jul 2018 11:00:15 +0000 (13:00 +0200)]
ref #7429 fix date parsing in name parser test

5 years agocleanup
Andreas Müller [Tue, 31 Jul 2018 10:16:45 +0000 (12:16 +0200)]
cleanup

5 years agofix #7429 improving verbatim time period parsing
Andreas Müller [Tue, 31 Jul 2018 10:15:24 +0000 (12:15 +0200)]
fix #7429  improving verbatim time period parsing

5 years agofix #7607 TypeDesignationSetManager: types without enclosing brackets
Andreas Kohlbecker [Tue, 31 Jul 2018 09:57:32 +0000 (11:57 +0200)]
fix #7607 TypeDesignationSetManager: types without enclosing brackets

5 years agoref #7429 fixing test for verbatim time period parsing
Andreas Müller [Mon, 30 Jul 2018 14:20:23 +0000 (16:20 +0200)]
ref #7429 fixing test for verbatim time period parsing

5 years agoref #7530 final changes for WfoAccess import
Andreas Müller [Mon, 30 Jul 2018 11:50:43 +0000 (13:50 +0200)]
ref #7530 final changes for WfoAccess import

5 years agoref #7429 "verbatimDate" [realDate] format implemented for VerbatimTimePeriodParser
Andreas Müller [Mon, 30 Jul 2018 11:48:33 +0000 (13:48 +0200)]
ref #7429  "verbatimDate" [realDate] format implemented for VerbatimTimePeriodParser

5 years agoref #7530 latest changes to WfoAccess import
Andreas Müller [Wed, 4 Jul 2018 09:16:30 +0000 (11:16 +0200)]
ref #7530 latest changes to WfoAccess import

5 years agoref #7597 Refactor aggregation method + add taxon aggregation method
Patrick Plitzner [Mon, 30 Jul 2018 07:05:54 +0000 (09:05 +0200)]
ref #7597 Refactor aggregation method + add taxon aggregation method

5 years agofix #7591 ReferencePropertyDefinitions adding 'General' and using 'all' as default
Andreas Kohlbecker [Fri, 27 Jul 2018 19:08:32 +0000 (21:08 +0200)]
fix #7591 ReferencePropertyDefinitions adding 'General' and using 'all' as default

5 years agoref #7597 Refactor aggregation method
Patrick Plitzner [Fri, 27 Jul 2018 14:09:00 +0000 (16:09 +0200)]
ref #7597 Refactor aggregation method

5 years agoref #7509 Add "computed" flag to description
Patrick Plitzner [Fri, 27 Jul 2018 12:18:53 +0000 (14:18 +0200)]
ref #7509 Add "computed" flag to description

5 years agoref #7589 Improve description search when adding specimens to the matrix
Patrick Plitzner [Fri, 27 Jul 2018 09:31:48 +0000 (11:31 +0200)]
ref #7589 Improve description search when adding specimens to the matrix

5 years agoref #7590 documentation
Andreas Kohlbecker [Fri, 27 Jul 2018 09:15:08 +0000 (11:15 +0200)]
ref #7590 documentation

5 years agoref #7590 replacing not flag in restrictions by AND_NOT and OR_NOT operators
Andreas Kohlbecker [Fri, 27 Jul 2018 06:49:53 +0000 (08:49 +0200)]
ref #7590 replacing not flag in restrictions by AND_NOT and OR_NOT operators

5 years agoref #7590 implementing AND and OR operator for restrictions and harmonizing code
Andreas Kohlbecker [Fri, 27 Jul 2018 06:41:52 +0000 (08:41 +0200)]
ref #7590 implementing AND and OR operator for restrictions and harmonizing code

5 years agoref #7589 Delete taxon node from descriptive data set
Patrick Plitzner [Thu, 26 Jul 2018 15:09:53 +0000 (17:09 +0200)]
ref #7589 Delete taxon node from descriptive data set

5 years agoFix possible NoSuchElementException
Patrick Plitzner [Thu, 26 Jul 2018 15:09:21 +0000 (17:09 +0200)]
Fix possible NoSuchElementException

5 years agominor
Katja Luther [Thu, 26 Jul 2018 11:02:17 +0000 (13:02 +0200)]
minor

5 years agomove getFieldUnits to findFieldUnits
Katja Luther [Thu, 26 Jul 2018 10:54:34 +0000 (12:54 +0200)]
move getFieldUnits to findFieldUnits

5 years agoadding new SpecimenOrObservationType and smaller changes
Katja Luther [Thu, 26 Jul 2018 10:19:56 +0000 (12:19 +0200)]
adding new SpecimenOrObservationType and smaller changes

5 years agosmaller changes in ABCD import
Katja Luther [Thu, 26 Jul 2018 09:15:42 +0000 (11:15 +0200)]
smaller changes in ABCD import

5 years agoRemove description from DescriptiveDataSet during deletion
Patrick Plitzner [Thu, 26 Jul 2018 08:02:31 +0000 (10:02 +0200)]
Remove description from DescriptiveDataSet during deletion

5 years agoFix dataset removal method (possibly copy&paste error)
Patrick Plitzner [Thu, 26 Jul 2018 08:00:49 +0000 (10:00 +0200)]
Fix dataset removal method (possibly copy&paste error)

5 years agoref #7573 adding AGTENTBASE to CdmPermissionClass and creating generic RoleProber
Andreas Kohlbecker [Wed, 25 Jul 2018 17:15:03 +0000 (19:15 +0200)]
ref #7573 adding AGTENTBASE to CdmPermissionClass and creating generic RoleProber

5 years agofix #7542: first remove synoným then add it to new accepted taxon to avoid orphan...
Katja Luther [Tue, 24 Jul 2018 13:58:31 +0000 (15:58 +0200)]
fix #7542: first remove synoným then add it to new accepted taxon to avoid orphan synonyms

5 years agofix #7578 DefaultValueProcessor to serialize all null numbers as null
Andreas Kohlbecker [Tue, 24 Jul 2018 12:38:36 +0000 (14:38 +0200)]
fix #7578 DefaultValueProcessor to serialize all null numbers as null

5 years agoref #7223 add in null case to ReferencePropertyDefinitions to provide all possible...
Andreas Kohlbecker [Tue, 24 Jul 2018 07:10:49 +0000 (09:10 +0200)]
ref #7223 add in null case to ReferencePropertyDefinitions to provide all possible fields

5 years agoAdd service method to find a description for a dataset
Patrick Plitzner [Mon, 23 Jul 2018 16:02:16 +0000 (18:02 +0200)]
Add service method to find a description for a dataset

5 years agoref #7348 implementing registrationWorkingSet service endpoint and harmonizing logging
Andreas Kohlbecker [Thu, 19 Jul 2018 08:54:59 +0000 (10:54 +0200)]
ref #7348 implementing registrationWorkingSet service endpoint and harmonizing logging

5 years agoref #7561 removing associated name and protologue from OccurrencePortalController...
Andreas Kohlbecker [Thu, 19 Jul 2018 06:29:20 +0000 (08:29 +0200)]
ref #7561 removing associated name and protologue from OccurrencePortalController and FieldUnitDTO

5 years agoref #7348 ordering registrations by identifier
Andreas Kohlbecker [Thu, 19 Jul 2018 06:28:08 +0000 (08:28 +0200)]
ref #7348 ordering registrations by identifier

5 years agoref #7348 stripping .json and .xml from reguest urls
Andreas Kohlbecker [Thu, 19 Jul 2018 06:26:54 +0000 (08:26 +0200)]
ref #7348 stripping .json and .xml from reguest urls

6 years agoref #7550 pluggable Role tests for the UserHelper
Andreas Kohlbecker [Mon, 16 Jul 2018 12:57:32 +0000 (14:57 +0200)]
ref #7550 pluggable Role tests for the UserHelper

6 years agoref #7348 preliminar swagger documentation on RegistrationDTOController and Registrat...
Andreas Kohlbecker [Fri, 13 Jul 2018 11:09:59 +0000 (13:09 +0200)]
ref #7348 preliminar swagger documentation on RegistrationDTOController and RegistrationController

6 years agoref #7348 implementing find service for registrations with user, typeDesignationStatu...
Andreas Kohlbecker [Fri, 13 Jul 2018 10:35:55 +0000 (12:35 +0200)]
ref #7348 implementing find service for registrations with user, typeDesignationStatus, registrationStatus, identifier and taxonname filters

6 years agoref #7348 typeDesignations as non bean property to supress it for RegistrationDTO...
Andreas Kohlbecker [Fri, 13 Jul 2018 05:57:14 +0000 (07:57 +0200)]
ref #7348 typeDesignations as non bean property to supress it for RegistrationDTO serializations

6 years agoref #7348 TypeDesignationSetManager provides TaggedText representation
Andreas Kohlbecker [Thu, 12 Jul 2018 20:08:44 +0000 (22:08 +0200)]
ref #7348 TypeDesignationSetManager provides TaggedText representation

6 years agoremoving bug which was introduced in 7dcfc77
Andreas Kohlbecker [Thu, 12 Jul 2018 19:17:19 +0000 (21:17 +0200)]
removing bug which was introduced in 7dcfc77

6 years agoref #7552 adding TypedEntityReference data to TaggedText
Andreas Kohlbecker [Thu, 12 Jul 2018 15:31:55 +0000 (17:31 +0200)]
ref #7552 adding TypedEntityReference data to TaggedText

6 years agoremoving almost unused type check methods from TaggedText
Andreas Kohlbecker [Thu, 12 Jul 2018 15:13:56 +0000 (17:13 +0200)]
removing almost unused type check methods from TaggedText

6 years agofix #6967 implementing registration/identifier endpoints for domain entity and DTO api
Andreas Kohlbecker [Thu, 12 Jul 2018 14:58:07 +0000 (16:58 +0200)]
fix #6967 implementing registration/identifier endpoints for domain entity and DTO api

6 years agotypo
Andreas Kohlbecker [Thu, 12 Jul 2018 13:41:41 +0000 (15:41 +0200)]
typo

6 years agoref #7527 adding missing @Transactional to new service methods
Andreas Kohlbecker [Thu, 12 Jul 2018 13:40:22 +0000 (15:40 +0200)]
ref #7527 adding missing @Transactional to new service methods

6 years agoref #7550 relaxing bean dependencies for tests without security context
Andreas Kohlbecker [Thu, 12 Jul 2018 13:38:19 +0000 (15:38 +0200)]
ref #7550 relaxing bean dependencies for tests without security context

6 years agoref #7550 adding CdmUserHelper and interfaces in cdmlib (commit also contains a new...
Andreas Kohlbecker [Thu, 12 Jul 2018 12:29:04 +0000 (14:29 +0200)]
ref #7550 adding CdmUserHelper and interfaces in cdmlib (commit also contains a new conroller helper method)

6 years agoSpecify return value for data value
Patrick Plitzner [Thu, 12 Jul 2018 10:46:15 +0000 (12:46 +0200)]
Specify return value for data value

6 years agoref #6967 implementing /registration/{identifier} in RegistrationController
Andreas Kohlbecker [Wed, 11 Jul 2018 13:47:14 +0000 (15:47 +0200)]
ref #6967 implementing /registration/{identifier} in RegistrationController

6 years agofix #7527 making page by parameter with criteria and restrictions available in the...
Andreas Kohlbecker [Wed, 11 Jul 2018 13:46:28 +0000 (15:46 +0200)]
fix #7527 making page by parameter with criteria and restrictions available in the service layer

6 years agoref #7546 RegistrationIdentifierMinter can check for matching identifiers
Andreas Kohlbecker [Wed, 11 Jul 2018 11:15:41 +0000 (13:15 +0200)]
ref #7546 RegistrationIdentifierMinter can check for matching identifiers

6 years agoref #7509 aggregate quant. and categorical data (simple concatenation)
Patrick Plitzner [Tue, 10 Jul 2018 16:26:50 +0000 (18:26 +0200)]
ref #7509 aggregate quant. and categorical data (simple concatenation)

6 years agoref #7509 Adapt aggregation method parameter list
Patrick Plitzner [Tue, 10 Jul 2018 14:51:08 +0000 (16:51 +0200)]
ref #7509 Adapt aggregation method parameter list

6 years agoref #7509 Generalize method parameter to List
Patrick Plitzner [Tue, 10 Jul 2018 11:14:26 +0000 (13:14 +0200)]
ref #7509 Generalize method parameter to List

6 years agoMerge branch 'develop' into aggregation
Patrick Plitzner [Tue, 10 Jul 2018 10:54:40 +0000 (12:54 +0200)]
Merge branch 'develop' into aggregation

# Conflicts:
# cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java

6 years agoMerge branch 'feature/#7531' into develop
Andreas Kohlbecker [Fri, 6 Jul 2018 13:14:54 +0000 (15:14 +0200)]
Merge branch 'feature/#7531' into develop

6 years agoref #7531 CdmPermissionEvaluator.hasPermission() wraps cdm entities in TargetEntityStates feature/#7531 origin/feature/#7531
Andreas Kohlbecker [Fri, 6 Jul 2018 13:10:37 +0000 (15:10 +0200)]
ref #7531 CdmPermissionEvaluator.hasPermission() wraps cdm entities in TargetEntityStates

6 years agoref #7531 RegistrationVoter evaluates previous state on Registration.status changes
Andreas Kohlbecker [Fri, 6 Jul 2018 12:28:59 +0000 (14:28 +0200)]
ref #7531 RegistrationVoter evaluates previous state on Registration.status changes

6 years agoref #7531 intoducing TargetEntityStates to replace plain cdm enities in the permissio...
Andreas Kohlbecker [Fri, 6 Jul 2018 11:27:59 +0000 (13:27 +0200)]
ref #7531 intoducing TargetEntityStates to replace plain cdm enities in the permission voting process

6 years agoref #7533 RegistrationService with typeStatus filter
Andreas Kohlbecker [Thu, 5 Jul 2018 15:21:03 +0000 (17:21 +0200)]
ref #7533 RegistrationService with typeStatus filter

6 years agorenaming variable
Andreas Kohlbecker [Thu, 5 Jul 2018 13:42:41 +0000 (15:42 +0200)]
renaming variable

6 years agoref #7528 ref #6655 introducing RegistrationStatusTransitions to provide a matrix...
Andreas Kohlbecker [Wed, 4 Jul 2018 12:53:55 +0000 (14:53 +0200)]
ref #7528 ref #6655  introducing RegistrationStatusTransitions to provide a matrix of allowed RegistrationStatus transitions

6 years agoTeamAutoInitializer only loads members for Teams
Andreas Kohlbecker [Mon, 2 Jul 2018 13:18:12 +0000 (15:18 +0200)]
TeamAutoInitializer only loads members for Teams

6 years agoremoving unnecessary casts
Andreas Kohlbecker [Mon, 2 Jul 2018 13:16:56 +0000 (15:16 +0200)]
removing unnecessary casts

6 years agojava doc and formatting
Andreas Kohlbecker [Mon, 2 Jul 2018 13:15:31 +0000 (15:15 +0200)]
java doc and formatting

6 years agocleanup
Andreas Müller [Tue, 3 Jul 2018 10:33:23 +0000 (12:33 +0200)]
cleanup

6 years agoref #7530 3 families and dianthus import (WFO Access Import)
Andreas Müller [Tue, 3 Jul 2018 10:23:56 +0000 (12:23 +0200)]
ref #7530 3 families and dianthus import (WFO Access Import)

6 years agocleanup
Andreas Müller [Wed, 27 Jun 2018 13:08:54 +0000 (15:08 +0200)]
cleanup

6 years agoref #7525 ref #7523 allowing to use Restriction as exclude filter
Andreas Kohlbecker [Mon, 2 Jul 2018 10:50:25 +0000 (12:50 +0200)]
ref #7525 ref #7523 allowing to use Restriction as exclude filter

6 years agoref #7525 restoring all previously removed Criteria methods
Andreas Kohlbecker [Mon, 2 Jul 2018 07:13:47 +0000 (09:13 +0200)]
ref #7525 restoring all previously removed Criteria methods

6 years agoRevert "ref #7527 renaming CdmEntityDaoBase.*ByParam* methods"
Andreas Kohlbecker [Fri, 29 Jun 2018 21:05:28 +0000 (23:05 +0200)]
Revert "ref #7527 renaming CdmEntityDaoBase.*ByParam* methods"

This reverts commit 13ec97dbc071864563698e422a15ad725e28a55b.

6 years agoref #7527 renaming CdmEntityDaoBase.*ByParam* methods
Andreas Kohlbecker [Fri, 29 Jun 2018 15:24:52 +0000 (17:24 +0200)]
ref #7527 renaming CdmEntityDaoBase.*ByParam* methods

6 years agofix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle...
Andreas Kohlbecker [Fri, 29 Jun 2018 12:45:29 +0000 (14:45 +0200)]
fix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle() methods

6 years agoUpdating develop poms back to pre merge state
jenkins [Wed, 27 Jun 2018 14:02:25 +0000 (16:02 +0200)]
Updating develop poms back to pre merge state

6 years agoMerge branch 'master' into develop
jenkins [Wed, 27 Jun 2018 14:02:24 +0000 (16:02 +0200)]
Merge branch 'master' into develop

6 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 27 Jun 2018 14:02:23 +0000 (16:02 +0200)]
updating develop poms to master versions to avoid merge conflicts

6 years agoMerge branch 'release/5.1.0' 5.1.0
jenkins [Wed, 27 Jun 2018 14:02:19 +0000 (16:02 +0200)]
Merge branch 'release/5.1.0'

6 years agoupdating poms for branch'release/5.1.0' with non-snapshot versions origin/release/5.1.0
jenkins [Wed, 27 Jun 2018 13:43:44 +0000 (15:43 +0200)]
updating poms for branch'release/5.1.0' with non-snapshot versions

6 years agoUpdating develop poms back to pre merge state
jenkins [Wed, 27 Jun 2018 13:36:46 +0000 (15:36 +0200)]
Updating develop poms back to pre merge state

6 years agoMerge branch 'master' into develop
jenkins [Wed, 27 Jun 2018 13:36:45 +0000 (15:36 +0200)]
Merge branch 'master' into develop

6 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 27 Jun 2018 13:36:45 +0000 (15:36 +0200)]
updating develop poms to master versions to avoid merge conflicts