Andreas Müller [Fri, 7 Aug 2015 15:34:00 +0000 (17:34 +0200)]
minor
Andreas Müller [Fri, 7 Aug 2015 15:24:03 +0000 (17:24 +0200)]
Adding filter functionality to stream converter (not yet ready)
Cherian Mathew [Fri, 7 Aug 2015 14:05:51 +0000 (16:05 +0200)]
Revert final qualifier after discussion in #5102
Cherian Mathew [Thu, 6 Aug 2015 13:57:00 +0000 (15:57 +0200)]
#5130 Extend cdmlib import architecture to allow for remoting and Add import methods to IOService
Cherian Mathew [Tue, 4 Aug 2015 16:29:08 +0000 (18:29 +0200)]
#5129 Extend export classes to allow for remote exports
Cherian Mathew [Thu, 30 Jul 2015 08:26:59 +0000 (10:26 +0200)]
Correct default cache initialisation
Andreas Kohlbecker [Fri, 24 Jul 2015 14:23:19 +0000 (16:23 +0200)]
#2988 avoiding NPE and allowing empty omitlevels (bug fix)
Andreas Müller [Fri, 24 Jul 2015 13:13:57 +0000 (15:13 +0200)]
Remove filter from stream partitioner
Andreas Kohlbecker [Fri, 24 Jul 2015 07:55:06 +0000 (09:55 +0200)]
minor code cleaning
Andreas Kohlbecker [Thu, 23 Jul 2015 14:07:12 +0000 (16:07 +0200)]
#4408 fixing a bug regarding fallback areas and adding more tests
Andreas Kohlbecker [Thu, 23 Jul 2015 13:24:52 +0000 (15:24 +0200)]
adding IdInVocabulary to the toString representation of NamedAreas
Andreas Kohlbecker [Thu, 23 Jul 2015 11:34:59 +0000 (13:34 +0200)]
#4408 removing occurences of fallbackAreaMarkerType in methods and renaming parameter in controller
Andreas Kohlbecker [Thu, 23 Jul 2015 08:23:09 +0000 (10:23 +0200)]
#4408 - updating documentation on Marked area filter regarding fallback areas
Andreas Kohlbecker [Tue, 21 Jul 2015 15:07:29 +0000 (17:07 +0200)]
merging fallbackAreaFilter rule into hiddenArea rule
Andreas Kohlbecker [Fri, 17 Jul 2015 19:54:17 +0000 (21:54 +0200)]
all rules separated
Andreas Kohlbecker [Fri, 17 Jul 2015 19:13:36 +0000 (21:13 +0200)]
minor refactoring
Andreas Kohlbecker [Fri, 17 Jul 2015 18:55:19 +0000 (20:55 +0200)]
disnetangling DescriptionUtility.filterDistributions()
Andreas Kohlbecker [Fri, 17 Jul 2015 17:38:50 +0000 (19:38 +0200)]
fixing broken pager of getNamedAreasInUse
Cherian Mathew [Wed, 22 Jul 2015 13:54:17 +0000 (15:54 +0200)]
#5100 Fix default language for remoting
Cherian Mathew [Wed, 22 Jul 2015 13:19:27 +0000 (15:19 +0200)]
Fix delete to return null if node corresponding to uuid does not exist
Cherian Mathew [Wed, 22 Jul 2015 12:23:50 +0000 (14:23 +0200)]
Intialise addresses in declaration to avoid orphan cascade issue
Patrick Plitzner [Wed, 22 Jul 2015 09:07:23 +0000 (11:07 +0200)]
Avoid concurrent modification during deep delete.
- cloned derivation events of child derivatives
- added test
Patrick Plitzner [Mon, 20 Jul 2015 15:32:22 +0000 (17:32 +0200)]
Add support for ABCD 2.0.6 in UnitAssociationParser
Patrick Plitzner [Mon, 20 Jul 2015 06:27:25 +0000 (08:27 +0200)]
# WARNING: head commit changed in the meantime
Log ignored specimens in import report
Cherian Mathew [Mon, 20 Jul 2015 13:35:12 +0000 (15:35 +0200)]
Add find method which can be filtered to update editor session
Cherian Mathew [Fri, 10 Jul 2015 08:32:10 +0000 (10:32 +0200)]
#5067 Updates for remoting derivate hierachy views
Cherian Mathew [Tue, 7 Jul 2015 12:11:59 +0000 (14:11 +0200)]
#5067 Add sequence service to httpinvoker list
Cherian Mathew [Mon, 20 Jul 2015 08:06:08 +0000 (10:06 +0200)]
Correct test to save taxon before making servive layer call
Andreas Müller [Sun, 19 Jul 2015 23:27:07 +0000 (01:27 +0200)]
Allow DwC-A import to filter streams and fix database mapping
Andreas Müller [Sun, 19 Jul 2015 23:25:23 +0000 (01:25 +0200)]
Fix preliminary 2 capitel author parsing #5096
Cherian Mathew [Fri, 17 Jul 2015 13:41:54 +0000 (15:41 +0200)]
Update service layer calls to use uuids, Add property paths to find call for performance tuning
Cherian Mathew [Fri, 17 Jul 2015 12:46:02 +0000 (14:46 +0200)]
#5095 Add @Ignore to failing tests for now
Andreas Müller [Fri, 17 Jul 2015 12:24:39 +0000 (14:24 +0200)]
Fix long running parser #5072
Cherian Mathew [Fri, 17 Jul 2015 11:41:20 +0000 (13:41 +0200)]
Fix for export
Andreas Müller [Thu, 16 Jul 2015 23:49:38 +0000 (01:49 +0200)]
Preliminary fix long runnig parser test
Andreas Müller [Thu, 16 Jul 2015 23:23:43 +0000 (01:23 +0200)]
Add commented test for long running parsing #5072
Andreas Müller [Thu, 16 Jul 2015 23:22:53 +0000 (01:22 +0200)]
Use ampersand as default for et al. teams #5093
jenkins [Thu, 16 Jul 2015 14:21:51 +0000 (16:21 +0200)]
Updating develop poms back to pre merge state
jenkins [Thu, 16 Jul 2015 14:21:50 +0000 (16:21 +0200)]
Merge branch 'master' into develop
jenkins [Thu, 16 Jul 2015 14:21:49 +0000 (16:21 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 16 Jul 2015 14:21:45 +0000 (16:21 +0200)]
Merge branch 'release/3.7.0'
jenkins [Thu, 16 Jul 2015 14:05:52 +0000 (16:05 +0200)]
updating poms for branch'release/3.7.0' with non-snapshot versions
jenkins [Thu, 16 Jul 2015 13:27:40 +0000 (15:27 +0200)]
updating poms for 3.8.0-SNAPSHOT development
Cherian Mathew [Thu, 16 Jul 2015 13:20:47 +0000 (15:20 +0200)]
Revert back to earlier version
Andreas Müller [Thu, 16 Jul 2015 11:38:33 +0000 (13:38 +0200)]
Fix taxon node comparator handling #4226
Andreas Müller [Mon, 13 Jul 2015 11:09:06 +0000 (13:09 +0200)]
index on master:
945061f Fix long running name parser problem #5072
jenkins [Wed, 15 Jul 2015 16:10:52 +0000 (18:10 +0200)]
Updating develop poms back to pre merge state
jenkins [Wed, 15 Jul 2015 16:10:51 +0000 (18:10 +0200)]
Merge branch 'master' into develop
jenkins [Wed, 15 Jul 2015 16:10:50 +0000 (18:10 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 15 Jul 2015 16:10:45 +0000 (18:10 +0200)]
Merge branch 'release/3.7.0'
jenkins [Wed, 15 Jul 2015 15:54:23 +0000 (17:54 +0200)]
updating poms for branch'release/3.7.0' with non-snapshot versions
jenkins [Wed, 15 Jul 2015 15:52:33 +0000 (17:52 +0200)]
updating poms for 3.8.0-SNAPSHOT development
Andreas Kohlbecker [Wed, 15 Jul 2015 15:41:24 +0000 (17:41 +0200)]
using the project.version for the cdmlib dependencies
Cherian Mathew [Wed, 15 Jul 2015 13:02:18 +0000 (15:02 +0200)]
Remove unnecessary version property in sub-modules
Cherian Mathew [Wed, 15 Jul 2015 12:32:06 +0000 (14:32 +0200)]
Revert back to version 3.7.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 12:00:47 +0000 (14:00 +0200)]
Updating develop poms back to pre merge state
jenkins [Wed, 15 Jul 2015 12:00:46 +0000 (14:00 +0200)]
Merge branch 'master' into develop
jenkins [Wed, 15 Jul 2015 12:00:45 +0000 (14:00 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 15 Jul 2015 12:00:41 +0000 (14:00 +0200)]
Merge branch 'release/3.7.0'
jenkins [Wed, 15 Jul 2015 11:46:16 +0000 (13:46 +0200)]
updating poms for branch'release/3.7.0' with non-snapshot versions
jenkins [Wed, 15 Jul 2015 11:42:40 +0000 (13:42 +0200)]
updating poms for 3.8.0-SNAPSHOT development
jenkins [Wed, 15 Jul 2015 11:42:39 +0000 (13:42 +0200)]
updating poms for 3.7.0 branch with snapshot versions
Andreas Kohlbecker [Wed, 15 Jul 2015 11:34:08 +0000 (13:34 +0200)]
using localy availabel pre-release build 1.0-m6 of jgitflow-maven-plugin in order to be able to use 0 as third digit in version numbers
Cherian Mathew [Wed, 15 Jul 2015 09:51:19 +0000 (11:51 +0200)]
Revert versions back to current
jenkins [Wed, 15 Jul 2015 09:39:03 +0000 (11:39 +0200)]
Updating develop poms back to pre merge state
jenkins [Wed, 15 Jul 2015 09:39:02 +0000 (11:39 +0200)]
Merge branch 'master' into develop
jenkins [Wed, 15 Jul 2015 09:39:01 +0000 (11:39 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Wed, 15 Jul 2015 09:38:57 +0000 (11:38 +0200)]
Merge branch 'release/3.13'
jenkins [Wed, 15 Jul 2015 09:23:16 +0000 (11:23 +0200)]
updating poms for branch'release/3.13' with non-snapshot versions
jenkins [Wed, 15 Jul 2015 08:25:26 +0000 (10:25 +0200)]
updating poms for 3.14-SNAPSHOT development
jenkins [Wed, 15 Jul 2015 08:20:50 +0000 (10:20 +0200)]
updating poms for 3.13-SNAPSHOT development
jenkins [Wed, 15 Jul 2015 08:06:33 +0000 (10:06 +0200)]
updating poms for 3.12-SNAPSHOT development
jenkins [Wed, 15 Jul 2015 07:47:30 +0000 (09:47 +0200)]
updating poms for 3.11-SNAPSHOT development
Patrick Plitzner [Wed, 15 Jul 2015 07:12:44 +0000 (09:12 +0200)]
Merge branch 'develop' into abcd
Patrick Plitzner [Tue, 14 Jul 2015 13:55:02 +0000 (15:55 +0200)]
Add new test file
Patrick Plitzner [Wed, 15 Jul 2015 07:03:27 +0000 (09:03 +0200)]
Add two new test files
Patrick Plitzner [Wed, 15 Jul 2015 07:02:47 +0000 (09:02 +0200)]
Enhance name parsing
- more logging
- fixed rank assignment
Patrick Plitzner [Wed, 15 Jul 2015 05:52:41 +0000 (07:52 +0200)]
Error logging for name parsing
- advanced readability
Patrick Plitzner [Wed, 15 Jul 2015 05:49:16 +0000 (07:49 +0200)]
Enhance name parsing
- added more error logging
- avoid creating duplicate taxon names due to parsing problems
Patrick Plitzner [Wed, 15 Jul 2015 05:48:26 +0000 (07:48 +0200)]
Remove parseNameAutomatically flag
jenkins [Tue, 14 Jul 2015 16:58:43 +0000 (18:58 +0200)]
updating poms for 3.10-SNAPSHOT development
jenkins [Tue, 14 Jul 2015 16:49:02 +0000 (18:49 +0200)]
updating poms for 3.9-SNAPSHOT development
jenkins [Tue, 14 Jul 2015 16:13:42 +0000 (18:13 +0200)]
updating poms for 3.8-SNAPSHOT development
Cherian Mathew [Tue, 14 Jul 2015 16:06:22 +0000 (18:06 +0200)]
Revert jgitflow settings to default
Cherian Mathew [Tue, 14 Jul 2015 15:58:31 +0000 (17:58 +0200)]
Update all version to next snapshot and remove duplicate version settings
Cherian Mathew [Tue, 14 Jul 2015 15:48:56 +0000 (17:48 +0200)]
Update version to remove patch number
Cherian Mathew [Tue, 14 Jul 2015 15:36:53 +0000 (17:36 +0200)]
Update pom to correct snapshot version
Cherian Mathew [Tue, 14 Jul 2015 15:12:06 +0000 (17:12 +0200)]
Add jgitflow plugin to pom
Katja Luther [Tue, 14 Jul 2015 12:26:38 +0000 (12:26 +0000)]
minor
Katja Luther [Tue, 14 Jul 2015 11:36:53 +0000 (11:36 +0000)]
Katja Luther [Tue, 14 Jul 2015 11:30:49 +0000 (11:30 +0000)]
Patrick Plitzner [Tue, 14 Jul 2015 11:29:11 +0000 (13:29 +0200)]
Add test to @ignore
Katja Luther [Tue, 14 Jul 2015 11:15:46 +0000 (11:15 +0000)]
Patrick Plitzner [Tue, 14 Jul 2015 11:03:53 +0000 (13:03 +0200)]
Refactor ABCD import
- use association wrapper to store prefix
- correctly push and pop import state
- only delete field unit if it has no other links to objects
Patrick Plitzner [Tue, 14 Jul 2015 07:27:46 +0000 (09:27 +0200)]
Refactor ABCD import
- removed "determination on field unit level" flag
- parse unit associations recursively
- removed field unit from import state
- enhanced unit association handling concerning field units and
ereivation events
Patrick Plitzner [Mon, 13 Jul 2015 14:51:50 +0000 (16:51 +0200)]
Merge branch 'master' into abcd
Patrick Plitzner [Mon, 13 Jul 2015 14:49:58 +0000 (16:49 +0200)]
Add new GGBN import test
Patrick Plitzner [Mon, 13 Jul 2015 14:48:13 +0000 (16:48 +0200)]
Increase character limit for titlecaches in test DB
Patrick Plitzner [Mon, 13 Jul 2015 12:44:22 +0000 (14:44 +0200)]
Fix taxon existance check
Andreas Kohlbecker [Mon, 13 Jul 2015 08:52:51 +0000 (10:52 +0200)]
typo