cdmlib.git
3 years agoremove redundant code
Andreas Müller [Mon, 29 Jun 2020 20:07:50 +0000 (22:07 +0200)]
remove redundant code

4 years agoupgrading common-beanutils to 1.9.4 and opting out from BEANUTILS_520
Andreas Kohlbecker [Mon, 29 Jun 2020 15:41:46 +0000 (17:41 +0200)]
upgrading common-beanutils to 1.9.4 and opting out from BEANUTILS_520

4 years agoadapt Language to store cached default language term locally as static variable
Andreas Müller [Mon, 29 Jun 2020 15:08:45 +0000 (17:08 +0200)]
adapt Language to store cached default language term locally as static variable

4 years agohandle update without recursion correctly in CacheLoader
Andreas Müller [Mon, 29 Jun 2020 15:04:02 +0000 (17:04 +0200)]
handle update without recursion correctly in CacheLoader

4 years agocleanup and rename methods and fix Fixme in ProxyUtils
Andreas Müller [Mon, 29 Jun 2020 15:02:53 +0000 (17:02 +0200)]
cleanup and rename methods and fix Fixme in ProxyUtils

4 years agoref #9102 TaxonNodeDto with statusNote, nodeStatus as status and status as TaxonStatus
Andreas Kohlbecker [Mon, 29 Jun 2020 14:14:54 +0000 (16:14 +0200)]
ref #9102 TaxonNodeDto with statusNote, nodeStatus as status and status as TaxonStatus

4 years agoref #9078 allow ignoring recursive loading of terms (cont.)
Andreas Müller [Mon, 29 Jun 2020 10:47:51 +0000 (12:47 +0200)]
ref #9078 allow ignoring recursive loading of terms (cont.)

4 years agocleanup
Andreas Müller [Mon, 29 Jun 2020 10:46:44 +0000 (12:46 +0200)]
cleanup

4 years agorename internal loadRecursive calls to distinguish them more clearly
Andreas Müller [Mon, 29 Jun 2020 10:43:41 +0000 (12:43 +0200)]
rename internal loadRecursive calls to distinguish them more clearly

4 years agoRevert "upgrade commons-beanutils from 1.9.2 to 1.9.4"
Andreas Müller [Mon, 29 Jun 2020 07:49:08 +0000 (09:49 +0200)]
Revert "upgrade commons-beanutils from 1.9.2 to 1.9.4"

This reverts commit 8f08a3aec70ba12d48ab061327524a69d766a109.

4 years agorename deproxy to deproxyIfInitialized
Andreas Müller [Mon, 29 Jun 2020 07:22:28 +0000 (09:22 +0200)]
rename deproxy to deproxyIfInitialized

4 years agoref #9078 allow ignoring recursive loading of terms
Andreas Müller [Sun, 28 Jun 2020 22:48:02 +0000 (00:48 +0200)]
ref #9078 allow ignoring recursive loading of terms

4 years agoimprove logging for CacheLoader
Andreas Müller [Sun, 28 Jun 2020 21:47:33 +0000 (23:47 +0200)]
improve logging for CacheLoader

4 years agorename CdmCacher to CdmCacherBase
Andreas Müller [Sun, 28 Jun 2020 20:05:00 +0000 (22:05 +0200)]
rename CdmCacher to CdmCacherBase

4 years agorenaming "putToCache" and "entityAlreadyVisisted" "classFields", fix logging text...
Andreas Müller [Sun, 28 Jun 2020 18:54:38 +0000 (20:54 +0200)]
renaming "putToCache" and "entityAlreadyVisisted" "classFields", fix logging text and extract method for field handling

4 years agocleanup
Andreas Müller [Sun, 28 Jun 2020 18:48:51 +0000 (20:48 +0200)]
cleanup

4 years agoupgrade commons-beanutils from 1.9.2 to 1.9.4
Andreas Müller [Sun, 28 Jun 2020 13:00:47 +0000 (15:00 +0200)]
upgrade commons-beanutils from 1.9.2 to 1.9.4

4 years agoref #9071 improve with-month-name period parsing
Andreas Müller [Sat, 27 Jun 2020 16:29:08 +0000 (18:29 +0200)]
ref #9071 improve with-month-name period parsing

4 years agoadd preferred languages to DesciptionElementFormatterBase
Andreas Müller [Sat, 27 Jun 2020 09:45:11 +0000 (11:45 +0200)]
add preferred languages to DesciptionElementFormatterBase

4 years agocleanup
Andreas Müller [Sat, 27 Jun 2020 09:20:35 +0000 (11:20 +0200)]
cleanup

4 years agoref #9071 add formatter for VerbatimTimePeriod
Andreas Müller [Sat, 27 Jun 2020 09:20:23 +0000 (11:20 +0200)]
ref #9071 add formatter for VerbatimTimePeriod

4 years agoref #9071 add formatter in ExtendedTimePeriod.toString
Andreas Müller [Sat, 27 Jun 2020 09:08:29 +0000 (11:08 +0200)]
ref #9071 add formatter in ExtendedTimePeriod.toString

4 years agocleanup
Andreas Müller [Sat, 27 Jun 2020 09:01:44 +0000 (11:01 +0200)]
cleanup

4 years agoref #9071 add additional ExtendedTimePeriodFormatter test
Andreas Müller [Sat, 27 Jun 2020 09:01:28 +0000 (11:01 +0200)]
ref #9071 add additional ExtendedTimePeriodFormatter test

4 years agoref #9071 create TimePeriodFormatter and ExtendedTimePeriodFormatter and move toStrin...
Andreas Müller [Sat, 27 Jun 2020 08:51:38 +0000 (10:51 +0200)]
ref #9071 create TimePeriodFormatter and ExtendedTimePeriodFormatter and move toString methods

4 years agomove some formatter tests to correct package
Andreas Müller [Sat, 27 Jun 2020 08:47:13 +0000 (10:47 +0200)]
move some formatter tests to correct package

4 years agoref #9071, ref #6276 improve TimePeriod parsing with continued
Andreas Müller [Sat, 27 Jun 2020 07:45:04 +0000 (09:45 +0200)]
ref #9071, ref #6276 improve TimePeriod parsing with continued

4 years agocleanup
Andreas Müller [Sat, 27 Jun 2020 07:44:07 +0000 (09:44 +0200)]
cleanup

4 years agoref #9071, ref #6276 improve TimePeriod parsing for periods with shared year or month...
Andreas Müller [Sat, 27 Jun 2020 07:03:27 +0000 (09:03 +0200)]
ref #9071, ref #6276 improve TimePeriod parsing for periods with shared year or month and some other

4 years agoref #7709 rename newEntity to volatileEntity
Andreas Müller [Fri, 26 Jun 2020 21:21:42 +0000 (23:21 +0200)]
ref #7709 rename newEntity to volatileEntity

4 years agoref #7709 rename addNewEntity to putNewEntity and check for existing entity
Andreas Müller [Fri, 26 Jun 2020 21:10:31 +0000 (23:10 +0200)]
ref #7709 rename addNewEntity to putNewEntity and check for existing entity

4 years agocleanup
Andreas Müller [Fri, 26 Jun 2020 21:09:30 +0000 (23:09 +0200)]
cleanup

4 years agoref #7709 rename putMethods in cacher
Andreas Müller [Fri, 26 Jun 2020 21:08:11 +0000 (23:08 +0200)]
ref #7709 rename putMethods in cacher

4 years agoref #9104 add NatrualLanguageTerm to hibernate.cfg.xml and recompile model cache
Andreas Müller [Fri, 26 Jun 2020 21:05:43 +0000 (23:05 +0200)]
ref #9104 add NatrualLanguageTerm to hibernate.cfg.xml and recompile model cache

4 years agoadd newEntitiesMap.clear to Cacher.clear
Andreas Müller [Fri, 26 Jun 2020 18:50:20 +0000 (20:50 +0200)]
add newEntitiesMap.clear to Cacher.clear

4 years agorename load to put
Andreas Müller [Fri, 26 Jun 2020 18:49:38 +0000 (20:49 +0200)]
rename load to put

4 years agocleanup
Andreas Müller [Fri, 26 Jun 2020 17:40:48 +0000 (19:40 +0200)]
cleanup

4 years agoref #9102 using TaxonNodeDto instead of TaxonNodeDtoBeanProcessor for multiple webser...
Andreas Kohlbecker [Fri, 26 Jun 2020 13:51:46 +0000 (15:51 +0200)]
ref #9102 using TaxonNodeDto instead of TaxonNodeDtoBeanProcessor for multiple webservices and adding sortMode parameter - bug fix

4 years agousing TaxonNodeDto instead of TaxonNodeDtoBeanProcessot for multiple webservices...
Andreas Kohlbecker [Fri, 26 Jun 2020 13:25:18 +0000 (15:25 +0200)]
using TaxonNodeDto instead of TaxonNodeDtoBeanProcessot for multiple webservices and adding sortMode parameter

4 years agocleanup
Andreas Müller [Fri, 26 Jun 2020 10:10:00 +0000 (12:10 +0200)]
cleanup

4 years agoupdate cached cdm model to 5.15.2
Andreas Müller [Fri, 26 Jun 2020 01:04:12 +0000 (03:04 +0200)]
update cached cdm model to 5.15.2

4 years agocleanup
Andreas Müller [Fri, 26 Jun 2020 01:03:23 +0000 (03:03 +0200)]
cleanup

4 years agoref #9071 remove ExtendedTimePeriodPartialFormatter which is no longer needed
Andreas Müller [Thu, 25 Jun 2020 23:46:01 +0000 (01:46 +0200)]
ref #9071 remove ExtendedTimePeriodPartialFormatter which is no longer needed

- ExtendedTimePeriod.toString() should be enough

4 years agoref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY (cont.)
Andreas Müller [Thu, 25 Jun 2020 23:22:38 +0000 (01:22 +0200)]
ref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY (cont.)

4 years agocleanup
Andreas Müller [Thu, 25 Jun 2020 23:21:02 +0000 (01:21 +0200)]
cleanup

4 years agoref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY
Andreas Müller [Thu, 25 Jun 2020 23:20:24 +0000 (01:20 +0200)]
ref #9071, ref #6276 fix order of TimePeriodFormatting to DD MMM YYYY

4 years agoref #9071 use new partial formatting also in ExtendedTimePeriodPartialFormatter
Andreas Müller [Thu, 25 Jun 2020 22:56:01 +0000 (00:56 +0200)]
ref #9071 use new partial formatting also in ExtendedTimePeriodPartialFormatter

4 years agocleanup
Andreas Müller [Thu, 25 Jun 2020 22:50:44 +0000 (00:50 +0200)]
cleanup

4 years agoref #9071, ref #6276 Change TimePeriodFormatting to YYYY-MMM-DD
Andreas Müller [Thu, 25 Jun 2020 22:47:55 +0000 (00:47 +0200)]
ref #9071, ref #6276 Change TimePeriodFormatting to YYYY-MMM-DD

4 years agofix #9101 fix compile error
Andreas Müller [Thu, 25 Jun 2020 17:03:48 +0000 (19:03 +0200)]
fix #9101 fix compile error

4 years agocleanup
Andreas Müller [Thu, 25 Jun 2020 16:50:48 +0000 (18:50 +0200)]
cleanup

4 years agofix #8991 fruiting period added
Andreas Müller [Thu, 25 Jun 2020 16:49:45 +0000 (18:49 +0200)]
fix #8991 fruiting period added

4 years agoreverting commit last for ref #9095, ref #9096, ref #7331 for a better solution
Andreas Kohlbecker [Thu, 25 Jun 2020 15:40:30 +0000 (17:40 +0200)]
reverting commit last for ref #9095, ref #9096, ref #7331 for a better solution

4 years agoref #7331 restoring lost test methods comment
Andreas Kohlbecker [Thu, 25 Jun 2020 11:59:58 +0000 (13:59 +0200)]
ref #7331 restoring lost test methods comment

4 years agoref #9095, ref #9096 catching LIEs at Team.members in TeamOrPersonBaseBeanProcessor...
Andreas Kohlbecker [Thu, 25 Jun 2020 10:22:51 +0000 (12:22 +0200)]
ref #9095, ref #9096 catching LIEs at Team.members in TeamOrPersonBaseBeanProcessor to handle problems potentially originating from bug ref #7331

4 years agofix #9097 updating to new geohack API
Andreas Kohlbecker [Thu, 25 Jun 2020 09:32:24 +0000 (11:32 +0200)]
fix #9097 updating to new geohack API

4 years agorevert removing findWithUpdate
Andreas Müller [Wed, 24 Jun 2020 23:53:58 +0000 (01:53 +0200)]
revert removing findWithUpdate

4 years agoremove redundant method findWithUpdate() from ICommonService (use find() instead).
Andreas Müller [Wed, 24 Jun 2020 22:40:45 +0000 (00:40 +0200)]
remove redundant method findWithUpdate() from ICommonService  (use find() instead).

4 years agocleanup
Andreas Müller [Wed, 24 Jun 2020 22:39:51 +0000 (00:39 +0200)]
cleanup

4 years agocleanup
Andreas Müller [Wed, 24 Jun 2020 21:35:54 +0000 (23:35 +0200)]
cleanup

4 years agoref #9010 proper initialization of TaxonNode.source
Andreas Kohlbecker [Wed, 24 Jun 2020 09:26:11 +0000 (11:26 +0200)]
ref #9010 proper initialization of TaxonNode.source

4 years agoUpdating develop poms back to pre merge state
jenkins [Tue, 23 Jun 2020 12:28:07 +0000 (14:28 +0200)]
Updating develop poms back to pre merge state

4 years agoMerge branch 'master' into develop
jenkins [Tue, 23 Jun 2020 12:28:05 +0000 (14:28 +0200)]
Merge branch 'master' into develop

4 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Tue, 23 Jun 2020 12:28:04 +0000 (14:28 +0200)]
updating develop poms to master versions to avoid merge conflicts

4 years agoMerge branch 'release/5.15.0' 5.15.0
jenkins [Tue, 23 Jun 2020 12:27:57 +0000 (14:27 +0200)]
Merge branch 'release/5.15.0'

4 years agoupdating poms for branch'release/5.15.0' with non-snapshot versions
jenkins [Tue, 23 Jun 2020 12:08:34 +0000 (14:08 +0200)]
updating poms for branch'release/5.15.0' with non-snapshot versions

4 years agoupdating poms for 5.16.0-SNAPSHOT development
jenkins [Tue, 23 Jun 2020 11:19:25 +0000 (13:19 +0200)]
updating poms for 5.16.0-SNAPSHOT development

4 years agoupdating poms for 5.15.0 branch with snapshot versions origin/release/5.15.0
jenkins [Tue, 23 Jun 2020 11:19:24 +0000 (13:19 +0200)]
updating poms for 5.15.0 branch with snapshot versions

4 years agoref #9078, ref #9085 fix deduplication of nom.ref. author
Andreas Müller [Tue, 23 Jun 2020 07:06:21 +0000 (09:06 +0200)]
ref #9078, ref #9085 fix deduplication of nom.ref. author

4 years agocleanup
Andreas Müller [Tue, 23 Jun 2020 06:36:56 +0000 (08:36 +0200)]
cleanup

4 years agoref #9078, ref #9085 improve deduplication of teams nom.ref. authors
Andreas Müller [Tue, 23 Jun 2020 06:36:42 +0000 (08:36 +0200)]
ref #9078, ref #9085 improve deduplication of teams nom.ref. authors

4 years agocleanup
Andreas Müller [Mon, 22 Jun 2020 21:46:51 +0000 (23:46 +0200)]
cleanup

4 years agofix NPE during specimen clone for matrix
Andreas Müller [Mon, 22 Jun 2020 20:52:16 +0000 (22:52 +0200)]
fix NPE during specimen clone for matrix

4 years agocleanup
Andreas Müller [Mon, 22 Jun 2020 20:51:24 +0000 (22:51 +0200)]
cleanup

4 years agoadd specimen to updateResult
Katja Luther [Mon, 22 Jun 2020 19:06:08 +0000 (21:06 +0200)]
add specimen to updateResult

4 years agoref #8134 fixing missing initialization of TaonNode.statusNode and source.citation
Andreas Kohlbecker [Mon, 22 Jun 2020 16:13:33 +0000 (18:13 +0200)]
ref #8134 fixing missing initialization of TaonNode.statusNode and source.citation

4 years agoref #9078 adapt return type of service.parseName
Andreas Müller [Mon, 22 Jun 2020 16:09:03 +0000 (18:09 +0200)]
ref #9078 adapt return type of service.parseName

4 years agoref #9004 change source type to DescriptionElementSource for TaxonNode.source
Andreas Müller [Mon, 22 Jun 2020 15:29:46 +0000 (17:29 +0200)]
ref #9004 change source type to DescriptionElementSource for TaxonNode.source

4 years agoref #8785: mergeDescriptions returns updateResult
Katja Luther [Mon, 22 Jun 2020 09:45:05 +0000 (11:45 +0200)]
ref #8785: mergeDescriptions returns updateResult

4 years agoref #9078 add parsing for existing names (II)
Andreas Müller [Sat, 20 Jun 2020 22:55:08 +0000 (00:55 +0200)]
ref #9078 add parsing for existing names (II)

4 years agoref #8785: fix saving of newly created descriptions for descriptive dataset
Katja Luther [Sat, 20 Jun 2020 08:53:48 +0000 (10:53 +0200)]
ref #8785: fix saving of newly created descriptions for descriptive dataset

4 years agorf #9078 add parsing for existing names
Andreas Müller [Sat, 20 Jun 2020 07:34:11 +0000 (09:34 +0200)]
rf #9078 add parsing for existing names

4 years agoref #9078 remove logging for deduplication
Andreas Müller [Sat, 20 Jun 2020 07:33:07 +0000 (09:33 +0200)]
ref #9078 remove logging for deduplication

4 years agoref #9085 improve X_OR_FIRST_NULL handling
Andreas Müller [Sat, 20 Jun 2020 07:31:54 +0000 (09:31 +0200)]
ref #9085 improve X_OR_FIRST_NULL handling

4 years agoref #9085 improvements to MatchStrategyFactory and switch order of match parameters...
Andreas Müller [Fri, 19 Jun 2020 21:25:58 +0000 (23:25 +0200)]
ref #9085 improvements to MatchStrategyFactory and switch order of match parameters, some improvements to TimePeriod matching

4 years agoref #8785: reuse compatible description when adding specimen to character matrix
Katja Luther [Fri, 19 Jun 2020 19:38:24 +0000 (21:38 +0200)]
ref #8785: reuse compatible description when adding specimen to character matrix

4 years agofix failing test and cleanup
Andreas Müller [Thu, 18 Jun 2020 22:31:19 +0000 (00:31 +0200)]
fix failing test and cleanup

4 years agofix failing test and cleanup
Andreas Müller [Thu, 18 Jun 2020 22:29:17 +0000 (00:29 +0200)]
fix failing test and cleanup

4 years agofix #9081 cleaning up tests using "00000000" (cont. 2)
Andreas Müller [Thu, 18 Jun 2020 22:21:13 +0000 (00:21 +0200)]
fix #9081 cleaning up tests using "00000000" (cont. 2)

4 years agofix #9081 cleaning up tests using "00000000" (cont.)
Andreas Müller [Thu, 18 Jun 2020 22:19:27 +0000 (00:19 +0200)]
fix #9081 cleaning up tests using "00000000" (cont.)

4 years agocleanup
Andreas Müller [Thu, 18 Jun 2020 22:02:45 +0000 (00:02 +0200)]
cleanup

4 years agofix #9081 cleaning up tests using "00000000"
Andreas Müller [Thu, 18 Jun 2020 22:02:23 +0000 (00:02 +0200)]
fix #9081 cleaning up tests using "00000000"

4 years agofix #9081 fix handling of empty Partial during save and in Person.get/setLifespan
Andreas Müller [Thu, 18 Jun 2020 21:54:41 +0000 (23:54 +0200)]
fix #9081 fix handling of empty Partial during save and in Person.get/setLifespan

4 years agocleanup
Andreas Müller [Thu, 18 Jun 2020 14:42:27 +0000 (16:42 +0200)]
cleanup

4 years agoref #8785: fix sql exception by fixing nullSafeSet
Katja Luther [Thu, 18 Jun 2020 09:46:32 +0000 (11:46 +0200)]
ref #8785: fix sql exception by fixing nullSafeSet

4 years agoref #8754: add deleteConfig for descriptiveDataset
Katja Luther [Wed, 17 Jun 2020 10:22:25 +0000 (12:22 +0200)]
ref #8754: add deleteConfig for descriptiveDataset

4 years agoref #9078 , ref #8857 use server side parsing in TaxonNodeServiceImpl.createNewTaxonNode
Andreas Müller [Tue, 16 Jun 2020 23:21:50 +0000 (01:21 +0200)]
ref #9078 , ref #8857 use server side parsing in TaxonNodeServiceImpl.createNewTaxonNode

4 years agoref #9078 first server side implementation for parsing and deduplication of names
Andreas Müller [Tue, 16 Jun 2020 23:20:31 +0000 (01:20 +0200)]
ref #9078 first server side implementation for parsing and deduplication of names

4 years agocleanup and remove deprecated JOIN type method
Andreas Müller [Tue, 16 Jun 2020 23:19:14 +0000 (01:19 +0200)]
cleanup and remove deprecated JOIN type method

4 years agocleanup
Andreas Müller [Tue, 16 Jun 2020 22:22:50 +0000 (00:22 +0200)]
cleanup