cdmlib.git
11 years agolast bugfix, now all test are successful
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:15 +0000 (06:15 +0000)]
last bugfix, now all test are successful

11 years agoDescriptionElement and Description permissions implemented
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:11 +0000 (06:15 +0000)]
DescriptionElement and Description permissions implemented

11 years agoDescriptionElement and Description permissions implemented
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:08 +0000 (06:15 +0000)]
DescriptionElement and Description permissions implemented

11 years agoDescriptionVoter implemented + authority syntax improvement + better parsing of autho...
Andreas Kohlbecker [Mon, 10 Sep 2012 06:15:03 +0000 (06:15 +0000)]
DescriptionVoter implemented + authority syntax improvement + better parsing of authority Strings (some tests failing)

11 years agoremoving implicitPermission and voters and some cleanup
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:57 +0000 (06:14 +0000)]
removing implicitPermission and voters and some cleanup

11 years agoall test SUCCESSFUL - (concept of implicitPermission and voters discarded and disabled)
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:54 +0000 (06:14 +0000)]
all test SUCCESSFUL - (concept of implicitPermission and voters discarded and disabled)

11 years agoremoving obsolete class
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:48 +0000 (06:14 +0000)]
removing obsolete class

11 years agoAccessDecisionVoter based acl implementation working - all test succeed, but assertio...
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:44 +0000 (06:14 +0000)]
AccessDecisionVoter based acl implementation working - all test succeed, but assertions in test missing

11 years agointroducing CdmPermissionVoters
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:38 +0000 (06:14 +0000)]
introducing CdmPermissionVoters

11 years agousing String EL for userService.changePasswordForUser() and a little house keeping
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:34 +0000 (06:14 +0000)]
using String EL for userService.changePasswordForUser() and a little house keeping

11 years agomore security testing
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:26 +0000 (06:14 +0000)]
more security testing

11 years agorenaming user in test data
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:21 +0000 (06:14 +0000)]
renaming user in test data

11 years agoonly white space
Andreas Kohlbecker [Mon, 10 Sep 2012 06:14:18 +0000 (06:14 +0000)]
only white space

11 years agoAlgaTerra categorical data and flat classifications
Andreas Müller [Sat, 8 Sep 2012 22:18:53 +0000 (22:18 +0000)]
AlgaTerra categorical data and flat classifications

11 years agoreverting last commit - will be committed again later
Andreas Kohlbecker [Sat, 8 Sep 2012 08:00:25 +0000 (08:00 +0000)]
reverting last commit - will be committed again later

11 years agomerging in git branch 'methodSecurityExpressions' and resolving conflict in SecurityT...
Andreas Kohlbecker [Fri, 7 Sep 2012 14:42:02 +0000 (14:42 +0000)]
merging in git branch 'methodSecurityExpressions' and resolving conflict in SecurityTest.java

11 years agoadd stateData to imports
Andreas Müller [Thu, 6 Sep 2012 13:30:34 +0000 (13:30 +0000)]
add stateData to imports

11 years agominor
Andreas Müller [Thu, 6 Sep 2012 09:58:21 +0000 (09:58 +0000)]
minor

11 years agothrow exception when resultset query is invalid
Andreas Müller [Wed, 5 Sep 2012 19:23:13 +0000 (19:23 +0000)]
throw exception when resultset query is invalid

11 years agoadd getByIso to WaterbodyAndCountry
Andreas Müller [Wed, 5 Sep 2012 19:22:30 +0000 (19:22 +0000)]
add getByIso to WaterbodyAndCountry

11 years agobugfix for factory method in TimePeriod constructor for Date
Andreas Müller [Wed, 5 Sep 2012 19:21:59 +0000 (19:21 +0000)]
bugfix for factory method in TimePeriod constructor for Date

11 years agonullSafeInt
Andreas Müller [Wed, 5 Sep 2012 18:52:40 +0000 (18:52 +0000)]
nullSafeInt

11 years agoadd factory method to TimePeriod for Date
Andreas Müller [Wed, 5 Sep 2012 17:07:32 +0000 (17:07 +0000)]
add factory method to TimePeriod for Date

11 years agoinoring failing test again
Andreas Kohlbecker [Wed, 5 Sep 2012 08:51:05 +0000 (08:51 +0000)]
inoring failing test again

11 years agominor logging
Andreas Müller [Tue, 4 Sep 2012 20:10:11 +0000 (20:10 +0000)]
minor logging

11 years agoBMImportConfig constructor from private to protected #3701
Andreas Müller [Tue, 4 Sep 2012 20:09:00 +0000 (20:09 +0000)]
BMImportConfig constructor from private to protected #3701

11 years agoadding logging output to some ACL related classes
Andreas Kohlbecker [Mon, 3 Sep 2012 09:02:59 +0000 (09:02 +0000)]
adding logging output to some ACL related classes

11 years agoextracting method CdmBase.instanceToString() from CdmBase.toString()
Andreas Kohlbecker [Mon, 3 Sep 2012 09:02:53 +0000 (09:02 +0000)]
extracting method CdmBase.instanceToString() from CdmBase.toString()

11 years agomaking securitiy test more meaningful => test result is not as expected => ignoring...
Andreas Kohlbecker [Fri, 31 Aug 2012 16:13:37 +0000 (16:13 +0000)]
making securitiy test more meaningful => test result is not as expected => ignoring test

11 years agoadding comments regarding permissions and authorities
Andreas Kohlbecker [Fri, 31 Aug 2012 16:13:33 +0000 (16:13 +0000)]
adding comments regarding permissions and authorities

11 years agoUpdated to remove calls to getRelatedFrom / getRelatedTo .
Cherian Mathew [Fri, 31 Aug 2012 12:03:48 +0000 (12:03 +0000)]
Updated to remove calls to getRelatedFrom / getRelatedTo .
Other indirect, transient methods in NameRelationship, TaxonRelationship and SynonymRelationship have been used.

11 years agoGetRelatedTo/From now changed back to being protected.
Cherian Mathew [Fri, 31 Aug 2012 11:57:14 +0000 (11:57 +0000)]
GetRelatedTo/From now changed back to being protected.

11 years agoconflict resolved
Andreas Kohlbecker [Thu, 30 Aug 2012 12:42:28 +0000 (12:42 +0000)]
conflict resolved

11 years agoNameCatalogueController : corrected apt transformation to html.
Cherian Mathew [Thu, 30 Aug 2012 07:43:57 +0000 (07:43 +0000)]
NameCatalogueController : corrected apt transformation to html.
HtmlView : added possibility for the input map to contain a complete html page

11 years agoadded hard coded examples to each documentation page
Cherian Mathew [Thu, 30 Aug 2012 07:42:27 +0000 (07:42 +0000)]
added hard coded examples to each documentation page

11 years agoremoving @Override from interface implementations
Andreas Kohlbecker [Wed, 29 Aug 2012 11:49:36 +0000 (11:49 +0000)]
removing @Override from interface implementations

11 years agofixing #3058 (hibernate search: not all description elements found) by padding all...
Andreas Kohlbecker [Wed, 29 Aug 2012 10:47:02 +0000 (10:47 +0000)]
fixing #3058 (hibernate search: not all description elements found) by padding all id fields in lucene

11 years ago- removed /{datasource} from web service urls, since they are not required anymore
Cherian Mathew [Fri, 24 Aug 2012 15:18:03 +0000 (15:18 +0000)]
- removed /{datasource} from web service urls, since they are not required anymore
- updated name_catalogue documentation with Andreas' comments

11 years agomade 'getRelatedFrom()' and 'getRelatedTo()' for use in NameCatalogueController
Cherian Mathew [Tue, 21 Aug 2012 11:40:50 +0000 (11:40 +0000)]
made 'getRelatedFrom()' and 'getRelatedTo()' for use in NameCatalogueController

11 years agoadded name and rank in taxon web service response
Cherian Mathew [Tue, 21 Aug 2012 11:39:35 +0000 (11:39 +0000)]
added name and rank in taxon web service response

12 years agofix #3046, order for taxa with 1 taxon having a nom.status.
Andreas Müller [Fri, 10 Aug 2012 16:03:49 +0000 (16:03 +0000)]
fix #3046, order for taxa with 1 taxon having a nom.status.

12 years agofix #3046, order for taxa with 1 taxon having a nom.status.
Andreas Müller [Fri, 10 Aug 2012 12:17:16 +0000 (12:17 +0000)]
fix #3046, order for taxa with 1 taxon having a nom.status.

12 years agofix NPE for NomStatus which has no type in TaxonComparator
Andreas Müller [Thu, 9 Aug 2012 13:22:11 +0000 (13:22 +0000)]
fix NPE for NomStatus which has no type in TaxonComparator

12 years agoreading apt file using input stream instead of file as this works also within jars
Cherian Mathew [Wed, 8 Aug 2012 08:28:18 +0000 (08:28 +0000)]
reading apt file using input stream instead of file as this works also within jars

12 years agoadded apt conversion method for input stream
Cherian Mathew [Wed, 8 Aug 2012 08:27:39 +0000 (08:27 +0000)]
added apt conversion method for input stream

12 years agocorrected copy resources task. now using copy-resources goal which does not interfere...
Cherian Mathew [Wed, 8 Aug 2012 08:25:51 +0000 (08:25 +0000)]
corrected copy resources task. now using copy-resources goal which does not interfere with the default resource copy.

12 years agoremove 001_cdm.hsqldb.ddl in io layer as we do use H2 for tests now. Keeping both...
Andreas Müller [Tue, 7 Aug 2012 14:18:33 +0000 (14:18 +0000)]
remove 001_cdm.hsqldb.ddl in io layer as we do use H2 for tests now. Keeping both requires overhead in maintaining.

12 years agoremove 001_cdm.hsqldb.ddl in ext layer as we do use H2 for tests now. Keeping both...
Andreas Müller [Tue, 7 Aug 2012 14:18:00 +0000 (14:18 +0000)]
remove 001_cdm.hsqldb.ddl in ext layer as we do use H2 for tests now. Keeping both requires overhead in maintaining.

12 years agoremove 001_cdm.hsqldb.ddl in service layer as we do use H2 for tests now. Keeping...
Andreas Müller [Tue, 7 Aug 2012 14:16:56 +0000 (14:16 +0000)]
remove 001_cdm.hsqldb.ddl in service layer as we do use H2 for tests now. Keeping both requires overhead in maintaining.

12 years agoremove 001_cdm.hsqldb.ddl as we do use H2 for tests now. Keeping both requires overhe...
Andreas Müller [Tue, 7 Aug 2012 14:06:40 +0000 (14:06 +0000)]
remove 001_cdm.hsqldb.ddl as we do use H2 for tests now. Keeping both requires overhead in maintaining.

12 years agoresources to be made accessible to classes (trying again to commit)
Cherian Mathew [Mon, 6 Aug 2012 12:23:32 +0000 (12:23 +0000)]
resources to be made accessible to classes (trying again to commit)

12 years agoxml files from "./src/main/resources/eu/etaxonomy/cdm" need to be accessible to the...
Cherian Mathew [Mon, 6 Aug 2012 11:50:09 +0000 (11:50 +0000)]
xml files from "./src/main/resources/eu/etaxonomy/cdm" need to be accessible to the classes, so added resources section in build.

12 years agoremove other cdmlib dependencies then io, and remove build for apt
Andreas Müller [Mon, 6 Aug 2012 09:01:20 +0000 (09:01 +0000)]
remove other cdmlib dependencies then io, and remove build for apt

12 years agoremove dependency to cdmlib-commons to check if this fixes failing tests, partly...
Andreas Müller [Mon, 6 Aug 2012 08:49:22 +0000 (08:49 +0000)]
remove dependency to cdmlib-commons to check if this fixes failing tests, partly revert for r15808

12 years agoadded apt file for name catalogue web services
Cherian Mathew [Wed, 1 Aug 2012 08:34:51 +0000 (08:34 +0000)]
added apt file for name catalogue web services
added 'name catalogue' apt as sub item to the REST API item.

12 years agoNameCatalogueController.java :
Cherian Mathew [Wed, 1 Aug 2012 08:33:13 +0000 (08:33 +0000)]
NameCatalogueController.java :
- added endpoints which return documentation
- imporoved javadoc

pom.xml :
- added dependency to cdmlib-commons due to usage of cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/DocUtils.java

12 years agoadded doxia-module dependencies for apt parsing
Cherian Mathew [Wed, 1 Aug 2012 08:31:03 +0000 (08:31 +0000)]
added doxia-module dependencies for apt parsing

12 years agoadded subdirectory for cdmlib remote endpoint documentation
Cherian Mathew [Wed, 1 Aug 2012 08:28:40 +0000 (08:28 +0000)]
added subdirectory for cdmlib remote endpoint documentation
added apt files for the name catalogue web service documentation

12 years agoThe utility class which provides methods relating to documentation.
Cherian Mathew [Wed, 1 Aug 2012 08:18:55 +0000 (08:18 +0000)]
The utility class which provides methods relating to documentation.

12 years agoupdate postgresql driver to version 9.1
Andreas Müller [Tue, 31 Jul 2012 15:01:42 +0000 (15:01 +0000)]
update postgresql driver to version 9.1

12 years agojsonp redirects to progress monitor working behind reverse proxy
Andreas Kohlbecker [Fri, 27 Jul 2012 15:42:40 +0000 (15:42 +0000)]
jsonp redirects to progress monitor working behind reverse proxy

12 years agofinally fixing bug in MediaUtils
Andreas Kohlbecker [Thu, 26 Jul 2012 09:24:26 +0000 (09:24 +0000)]
finally fixing bug in MediaUtils

12 years agosolving git-svn branch and merge problems
Andreas Kohlbecker [Thu, 26 Jul 2012 08:41:15 +0000 (08:41 +0000)]
solving git-svn branch and merge problems

12 years agofixing bug in getMediaForTaxon() & whitespace
Andreas Kohlbecker [Thu, 26 Jul 2012 08:18:23 +0000 (08:18 +0000)]
fixing bug in getMediaForTaxon() & whitespace

12 years agoreverting preliminar commits on security and permissions r15723 r15724
Andreas Kohlbecker [Thu, 26 Jul 2012 07:49:50 +0000 (07:49 +0000)]
reverting preliminar commits on security and permissions r15723 r15724

12 years agopreliminar commit on security and permissions
Andreas Kohlbecker [Thu, 26 Jul 2012 07:38:48 +0000 (07:38 +0000)]
preliminar commit on security and permissions

12 years agopreliminar commit on security and permissions
Andreas Kohlbecker [Thu, 26 Jul 2012 07:38:44 +0000 (07:38 +0000)]
preliminar commit on security and permissions

12 years agoprevent media from being corrupted - fixing bugs in test and utils class
Andreas Kohlbecker [Thu, 26 Jul 2012 07:38:42 +0000 (07:38 +0000)]
prevent media from being corrupted - fixing bugs in test and utils class

12 years agoMediaUtils.findPreferredMedia() returns Map<Media, MediaRepresentation>
Andreas Kohlbecker [Wed, 25 Jul 2012 12:37:42 +0000 (12:37 +0000)]
MediaUtils.findPreferredMedia() returns Map<Media, MediaRepresentation>

12 years agocode cleaning
Andreas Kohlbecker [Wed, 25 Jul 2012 12:37:37 +0000 (12:37 +0000)]
code cleaning

12 years agoprevent media from being corrupted - fixing bugs in test and utils class
Andreas Kohlbecker [Wed, 25 Jul 2012 08:23:45 +0000 (08:23 +0000)]
prevent media from being corrupted - fixing bugs in test and utils class

12 years agobugfix for countTaxonDescriptionMedia
Andreas Müller [Tue, 24 Jul 2012 22:01:29 +0000 (22:01 +0000)]
bugfix for countTaxonDescriptionMedia

12 years agoadd TaxonDescriptionMedia methods to description service
Andreas Müller [Tue, 24 Jul 2012 21:58:01 +0000 (21:58 +0000)]
add TaxonDescriptionMedia methods to description service

12 years agoadd methods for list/countTaxonDescriptionMedia
Andreas Müller [Tue, 24 Jul 2012 21:35:01 +0000 (21:35 +0000)]
add methods for list/countTaxonDescriptionMedia

12 years agominor
Andreas Müller [Tue, 24 Jul 2012 17:09:25 +0000 (17:09 +0000)]
minor

12 years agorefactoring listTaxonDescriptionMedia into ITaxonService
Andreas Kohlbecker [Tue, 24 Jul 2012 15:58:13 +0000 (15:58 +0000)]
refactoring listTaxonDescriptionMedia into ITaxonService

12 years agoprevent media from being corrupted
Andreas Kohlbecker [Tue, 24 Jul 2012 15:58:09 +0000 (15:58 +0000)]
prevent media from being corrupted

12 years agofixing URL path problems in ProgressMonitorController
Andreas Kohlbecker [Mon, 23 Jul 2012 14:20:03 +0000 (14:20 +0000)]
fixing URL path problems in ProgressMonitorController

12 years agomodifications for Ajax rest service monitor
Andreas Kohlbecker [Mon, 23 Jul 2012 10:45:40 +0000 (10:45 +0000)]
modifications for Ajax rest service monitor

12 years agominor
Andreas Müller [Fri, 20 Jul 2012 09:56:26 +0000 (09:56 +0000)]
minor

12 years agominor
Andreas Müller [Fri, 20 Jul 2012 09:53:58 +0000 (09:53 +0000)]
minor

12 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Thu, 19 Jul 2012 11:32:29 +0000 (11:32 +0000)]
[maven-release-plugin] prepare for next development iteration

12 years ago[maven-release-plugin] prepare release cdmlib-parent-3.0.12 root/tags/cdmlib/cdmlib-parent-3.0.12 cdmlib-parent-3.0.12
edit-jenkins [Thu, 19 Jul 2012 11:32:27 +0000 (11:32 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.12

12 years agofixing RequestMapping of controller
Andreas Kohlbecker [Thu, 19 Jul 2012 08:16:15 +0000 (08:16 +0000)]
fixing RequestMapping of controller

12 years agomonitoring rest service initiated long term processes implemented
Andreas Kohlbecker [Wed, 18 Jul 2012 13:56:06 +0000 (13:56 +0000)]
monitoring rest service initiated long term processes implemented

12 years agoMassIndexer progress monitor enabled
Andreas Kohlbecker [Wed, 18 Jul 2012 13:56:05 +0000 (13:56 +0000)]
MassIndexer progress monitor enabled

12 years agopreliminar .gitignore
Andreas Kohlbecker [Wed, 18 Jul 2012 13:56:04 +0000 (13:56 +0000)]
preliminar .gitignore

12 years ago#2961 (test for highlighting multiple words as phrase FAILS)
Andreas Kohlbecker [Thu, 12 Jul 2012 11:58:58 +0000 (11:58 +0000)]
#2961 (test for highlighting multiple words as phrase FAILS)

12 years agofix encoding problem
Andreas Müller [Wed, 11 Jul 2012 20:30:01 +0000 (20:30 +0000)]
fix encoding problem

12 years agofix bug in point tertier caching #2962
Andreas Müller [Wed, 11 Jul 2012 16:04:13 +0000 (16:04 +0000)]
fix bug in point tertier caching #2962

12 years agofix bug in point tertier caching #2962
Andreas Müller [Wed, 11 Jul 2012 16:03:17 +0000 (16:03 +0000)]
fix bug in point tertier caching #2962

12 years agoignoring failing test since ticket has been created
Andreas Kohlbecker [Wed, 11 Jul 2012 14:23:02 +0000 (14:23 +0000)]
ignoring failing test since ticket has been created

12 years agoimproving search syntax robustness
Andreas Kohlbecker [Wed, 11 Jul 2012 14:21:52 +0000 (14:21 +0000)]
improving search syntax robustness

12 years agotest for highlighting multiple words in OR and AND combination also as Phrase - FAILS...
Andreas Kohlbecker [Wed, 11 Jul 2012 14:13:03 +0000 (14:13 +0000)]
test for highlighting multiple words in OR and AND combination also as Phrase - FAILS with phrase

12 years agotest for searching multiple words in OR and AND combination also as Phrase
Andreas Kohlbecker [Wed, 11 Jul 2012 13:38:09 +0000 (13:38 +0000)]
test for searching multiple words in OR and AND combination also as Phrase

12 years agodeleting empty folder
Andreas Kohlbecker [Wed, 11 Jul 2012 12:34:39 +0000 (12:34 +0000)]
deleting empty folder

12 years agofixing hibernate_sequences
Andreas Kohlbecker [Wed, 11 Jul 2012 08:26:05 +0000 (08:26 +0000)]
fixing hibernate_sequences

12 years agofixing #2306 (holotype is only displayed as type)
Andreas Kohlbecker [Tue, 10 Jul 2012 16:01:19 +0000 (16:01 +0000)]
fixing #2306 (holotype is only displayed as type)

12 years agosolving #2958 (rename and move TaxonServiceConfigurator)
Andreas Kohlbecker [Tue, 10 Jul 2012 15:07:38 +0000 (15:07 +0000)]
solving #2958 (rename and move TaxonServiceConfigurator)

12 years agominor
Andreas Müller [Mon, 9 Jul 2012 16:16:53 +0000 (16:16 +0000)]
minor