Katja Luther [Mon, 6 Oct 2014 11:12:36 +0000 (11:12 +0000)]
Katja Luther [Mon, 6 Oct 2014 11:04:09 +0000 (11:04 +0000)]
Katja Luther [Mon, 6 Oct 2014 10:54:19 +0000 (10:54 +0000)]
Katja Luther [Mon, 6 Oct 2014 10:53:36 +0000 (10:53 +0000)]
Katja Luther [Mon, 6 Oct 2014 10:45:34 +0000 (10:45 +0000)]
Katja Luther [Mon, 6 Oct 2014 10:39:12 +0000 (10:39 +0000)]
move the profiler back to persistence
Katja Luther [Mon, 6 Oct 2014 10:17:44 +0000 (10:17 +0000)]
Katja Luther [Mon, 6 Oct 2014 10:13:08 +0000 (10:13 +0000)]
Katja Luther [Mon, 6 Oct 2014 10:03:02 +0000 (10:03 +0000)]
moving profiler to commons
Katja Luther [Mon, 6 Oct 2014 09:59:33 +0000 (09:59 +0000)]
Katja Luther [Thu, 2 Oct 2014 13:21:42 +0000 (13:21 +0000)]
Katja Luther [Thu, 2 Oct 2014 13:11:03 +0000 (13:11 +0000)]
Katja Luther [Thu, 2 Oct 2014 13:09:34 +0000 (13:09 +0000)]
Katja Luther [Thu, 2 Oct 2014 11:08:01 +0000 (11:08 +0000)]
minor
Katja Luther [Thu, 2 Oct 2014 11:00:16 +0000 (11:00 +0000)]
adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor
Alexander Oppermann [Fri, 26 Sep 2014 08:31:35 +0000 (08:31 +0000)]
Added a classification selector view for vaadin client.
Andreas Müller [Mon, 22 Sep 2014 16:28:12 +0000 (16:28 +0000)]
fix Specimen import test
Alexander Oppermann [Fri, 19 Sep 2014 09:11:55 +0000 (09:11 +0000)]
Added null checks for comparator
Andreas Müller [Thu, 18 Sep 2014 09:08:19 +0000 (09:08 +0000)]
Ignore new Specimen Test as it fails to run in suite
Andreas Müller [Thu, 18 Sep 2014 08:49:37 +0000 (08:49 +0000)]
remove warn logging form media data
Patric Plitzner [Wed, 17 Sep 2014 16:49:12 +0000 (16:49 +0000)]
- fixed multiple creation of subspecies nodes
Cherian Mathew [Wed, 17 Sep 2014 16:13:48 +0000 (16:13 +0000)]
HandlingCdmEntitiesTest.java / HandlingCdmEntitiesTest.xml : Added new test to describe save, update, merge of cdm entities (mimicking remoting)
cdmlib-remote-servlet.xml : added commented option to expose remoting
CdmIntegrationTest.java : added comment on how to disable transactional behaviour in tests
Patric Plitzner [Wed, 17 Sep 2014 12:35:50 +0000 (12:35 +0000)]
- fixed the unnecessary creation of multiple references and taxon nodes in ABCD import
- added new ABCD import test
Patric Plitzner [Tue, 16 Sep 2014 13:17:06 +0000 (13:17 +0000)]
-added CleanSweepInsertLoadStrategy to fix failing test
Patric Plitzner [Tue, 16 Sep 2014 11:52:10 +0000 (11:52 +0000)]
- refactored data structure for taxon identifications in ABCD import
- trimming scientific names avoids creation of multiple taxa/taxon nodes
- added check for number of taxon nodes to test
Patric Plitzner [Tue, 16 Sep 2014 06:48:18 +0000 (06:48 +0000)]
- cleaned up code
Patric Plitzner [Tue, 16 Sep 2014 04:16:32 +0000 (04:16 +0000)]
- fixed typo
Katja Luther [Mon, 15 Sep 2014 12:41:29 +0000 (12:41 +0000)]
fix delete taxon nodes with children
Patric Plitzner [Mon, 15 Sep 2014 12:14:27 +0000 (12:14 +0000)]
- added resetFields() method to avoid NonUniqueObjectExceptions
Andreas Müller [Thu, 11 Sep 2014 12:29:51 +0000 (12:29 +0000)]
bugfix for null rank in #4374
Andreas Müller [Thu, 11 Sep 2014 12:05:29 +0000 (12:05 +0000)]
update javadoc for OrderedTermBase.compareTo
Andreas Müller [Thu, 11 Sep 2014 12:02:15 +0000 (12:02 +0000)]
minor javadoc
Andreas Müller [Thu, 11 Sep 2014 11:52:56 +0000 (11:52 +0000)]
remove generics
Katja Luther [Thu, 11 Sep 2014 11:21:19 +0000 (11:21 +0000)]
compare classes instead of voc
Andreas Müller [Thu, 11 Sep 2014 10:44:13 +0000 (10:44 +0000)]
add override
Andreas Müller [Thu, 11 Sep 2014 10:20:41 +0000 (10:20 +0000)]
generics
Andreas Müller [Thu, 11 Sep 2014 10:11:23 +0000 (10:11 +0000)]
typos
Katja Luther [Thu, 11 Sep 2014 10:02:00 +0000 (10:02 +0000)]
overwrite the performCompareTo method in PresenceAbsenceTermBase for a comparison of presence and absence terms (presence terms are sorted before absence terms)
Andreas Müller [Wed, 10 Sep 2014 14:22:00 +0000 (14:22 +0000)]
handle null name
Patric Plitzner [Wed, 10 Sep 2014 12:52:27 +0000 (12:52 +0000)]
- removed @Cascade for country in GatheringEvent because DefinedTerms should not be cascaded
- added new service method to occurence service to find all CDM entities that are not saved via cascading
- added tests for new method
- added test for concurrent session saving of terms
- made use of method for specimen import via DataImportView
Andreas Müller [Wed, 10 Sep 2014 10:43:51 +0000 (10:43 +0000)]
typos
Andreas Müller [Wed, 10 Sep 2014 10:42:39 +0000 (10:42 +0000)]
typos
Andreas Müller [Wed, 10 Sep 2014 10:41:18 +0000 (10:41 +0000)]
typos
Andreas Müller [Wed, 10 Sep 2014 10:38:38 +0000 (10:38 +0000)]
typos
Andreas Müller [Wed, 10 Sep 2014 10:37:27 +0000 (10:37 +0000)]
typos
Andreas Müller [Wed, 10 Sep 2014 10:35:51 +0000 (10:35 +0000)]
typos
Patric Plitzner [Tue, 9 Sep 2014 13:44:28 +0000 (13:44 +0000)]
- temporarily disabled test
Patric Plitzner [Tue, 9 Sep 2014 12:41:55 +0000 (12:41 +0000)]
- used utility method for modifier
Patric Plitzner [Tue, 9 Sep 2014 11:07:57 +0000 (11:07 +0000)]
- replaced save() with saveOrUpdate()
Patric Plitzner [Tue, 9 Sep 2014 10:03:25 +0000 (10:03 +0000)]
- adpated test to model changes (cascading)
Patric Plitzner [Tue, 9 Sep 2014 10:02:21 +0000 (10:02 +0000)]
- added cascading to setOfReferences in DeterminationEvent
Patric Plitzner [Tue, 9 Sep 2014 07:47:17 +0000 (07:47 +0000)]
- changed from MySql to H2
Patric Plitzner [Tue, 9 Sep 2014 07:02:30 +0000 (07:02 +0000)]
- added test for saving non-cascaded CDM entities
Patric Plitzner [Mon, 8 Sep 2014 13:01:43 +0000 (13:01 +0000)]
- fixed possible NPE
Patric Plitzner [Mon, 8 Sep 2014 12:10:19 +0000 (12:10 +0000)]
- adapted some save method to allow transient services (#3726)
edit-jenkins [Thu, 4 Sep 2014 14:38:44 +0000 (14:38 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Thu, 4 Sep 2014 14:38:41 +0000 (14:38 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.3.7
Alexander Oppermann [Thu, 4 Sep 2014 09:49:35 +0000 (09:49 +0000)]
added FEATURE_STORE to be compliant with XML-IMPORT for cdmlib-app
Andreas Kohlbecker [Thu, 4 Sep 2014 09:39:38 +0000 (09:39 +0000)]
reverting hack related to #4368 (caching api causes bug in Rank.getAbbreviation())
Andreas Kohlbecker [Thu, 4 Sep 2014 09:39:35 +0000 (09:39 +0000)]
updating TODO
Cherian Mathew [Thu, 4 Sep 2014 08:33:24 +0000 (08:33 +0000)]
added check for null cdm entity when putting default terms in cache
Cherian Mathew [Wed, 3 Sep 2014 16:34:49 +0000 (16:34 +0000)]
added possiblity to initialise some specific terms (like default language) which could be called outside a session
Andreas Müller [Tue, 2 Sep 2014 14:54:42 +0000 (14:54 +0000)]
some generics
Andreas Müller [Tue, 2 Sep 2014 14:51:55 +0000 (14:51 +0000)]
minor
Patric Plitzner [Mon, 1 Sep 2014 13:46:33 +0000 (13:46 +0000)]
- fixed parsing of elevation in GBIF response
Andreas Kohlbecker [Tue, 26 Aug 2014 10:16:57 +0000 (10:16 +0000)]
refactoring taxon controllers, reducing code duplication
Andreas Kohlbecker [Fri, 22 Aug 2014 12:50:08 +0000 (12:50 +0000)]
fixing prefer specific distributions for #3904 (EuroMed: Implement filtering rules for Distributions), status=null was ereoneously preferred
Andreas Kohlbecker [Fri, 22 Aug 2014 11:26:44 +0000 (11:26 +0000)]
solving #4294 (order of map legend entries conforms to term order)
Andreas Kohlbecker [Fri, 22 Aug 2014 11:23:09 +0000 (11:23 +0000)]
first attempt to fix #4294 (order of map legend entries conforms to term order)
Andreas Kohlbecker [Fri, 22 Aug 2014 11:20:56 +0000 (11:20 +0000)]
adding @Transient to new API methods introduced for #3327 (better API for OrderedTermBase and OrderedTermVocabulary)
Andreas Müller [Thu, 21 Aug 2014 18:08:10 +0000 (18:08 +0000)]
minor
Andreas Müller [Thu, 21 Aug 2014 18:03:47 +0000 (18:03 +0000)]
minor
Andreas Müller [Thu, 21 Aug 2014 17:54:53 +0000 (17:54 +0000)]
remove potential NPE in CdmDataSourceBase
Katja Luther [Thu, 21 Aug 2014 12:23:10 +0000 (12:23 +0000)]
fix the test
Katja Luther [Thu, 21 Aug 2014 10:45:23 +0000 (10:45 +0000)]
isDeletable ignores relations of identifiableEntity
Patric Plitzner [Thu, 21 Aug 2014 07:52:52 +0000 (07:52 +0000)]
- generalized simple user interface to add media (#3339)
Katja Luther [Wed, 20 Aug 2014 12:58:30 +0000 (12:58 +0000)]
Patric Plitzner [Wed, 20 Aug 2014 07:17:05 +0000 (07:17 +0000)]
- assured image order for images from image galleries #3242
Patric Plitzner [Tue, 19 Aug 2014 15:14:47 +0000 (15:14 +0000)]
- changed HashMap to LinkedHashMap to keep order of insertion
- this should fix #3242
Andreas Müller [Tue, 19 Aug 2014 14:35:39 +0000 (14:35 +0000)]
remove old and misleading titleCache length
Andreas Müller [Tue, 19 Aug 2014 14:27:06 +0000 (14:27 +0000)]
minor
Andreas Müller [Tue, 19 Aug 2014 14:26:15 +0000 (14:26 +0000)]
remove TODO
Andreas Kohlbecker [Tue, 19 Aug 2014 12:11:12 +0000 (12:11 +0000)]
updating team
Katja Luther [Tue, 19 Aug 2014 08:01:39 +0000 (08:01 +0000)]
fix jenkins
Katja Luther [Mon, 18 Aug 2014 20:31:43 +0000 (20:31 +0000)]
Katja Luther [Mon, 18 Aug 2014 20:01:55 +0000 (20:01 +0000)]
Andreas Müller [Mon, 18 Aug 2014 14:58:27 +0000 (14:58 +0000)]
add vol to generic infereference formatting
Katja Luther [Mon, 18 Aug 2014 07:58:55 +0000 (07:58 +0000)]
Katja Luther [Tue, 12 Aug 2014 08:33:04 +0000 (08:33 +0000)]
isAncestor() using treeIndex
Andreas Kohlbecker [Mon, 11 Aug 2014 13:28:58 +0000 (13:28 +0000)]
gitignore
Andreas Müller [Mon, 11 Aug 2014 13:15:35 +0000 (13:15 +0000)]
missing update
Andreas Müller [Mon, 11 Aug 2014 13:03:12 +0000 (13:03 +0000)]
better handling of abbreviated title cache in references, series -> seriesPart and some improvements in the reference cache strategies #4280, #4239 , changes in tests
Andreas Müller [Mon, 11 Aug 2014 12:56:59 +0000 (12:56 +0000)]
better handling of abbreviated title cache in references, series -> seriesPart and some improvements in the reference cache strategies #4280, #4239
Patric Plitzner [Mon, 11 Aug 2014 11:43:56 +0000 (11:43 +0000)]
- added timeout and null check
Andreas Müller [Fri, 8 Aug 2014 14:46:58 +0000 (14:46 +0000)]
Formatting for aggregates with Authors (E+M exception)
Andreas Müller [Fri, 8 Aug 2014 13:54:37 +0000 (13:54 +0000)]
Change authorTeam types in NonViralName from INomenclaturalAuthor to TeamOrPersonBase #1489
Andreas Kohlbecker [Fri, 8 Aug 2014 13:12:48 +0000 (13:12 +0000)]
reverting test for #686 (orderindex of rank undefined) to ist original version and removing ignore since the bug is fixed now
Andreas Kohlbecker [Fri, 8 Aug 2014 13:12:42 +0000 (13:12 +0000)]
throwing exception in case vocabulary is not found
Andreas Müller [Thu, 7 Aug 2014 17:38:58 +0000 (17:38 +0000)]
minor
Andreas Müller [Thu, 7 Aug 2014 17:28:31 +0000 (17:28 +0000)]
removing old ignore and FIXME #530