cdmlib.git
4 years agofix correct handling of description configuration
Katja Luther [Fri, 27 Mar 2020 10:32:59 +0000 (11:32 +0100)]
fix correct handling of description configuration

4 years agomoving ReferenceEllypsisFormatter to package eu.etaxonomy.cdm.format.reference
Andreas Kohlbecker [Fri, 27 Mar 2020 10:09:49 +0000 (11:09 +0100)]
moving ReferenceEllypsisFormatter to package eu.etaxonomy.cdm.format.reference

4 years agoref #8907 basing testGetTaxonNodeUuidAndTitleCacheOfacceptedTaxaByClassificationForNa...
Andreas Kohlbecker [Thu, 26 Mar 2020 16:19:04 +0000 (17:19 +0100)]
ref #8907 basing testGetTaxonNodeUuidAndTitleCacheOfacceptedTaxaByClassificationForNameWithoutRank on TaxonNodeDaoHibernateImplTest.findWithoutRank.xml

4 years agoref #8907 cleaning up test data
Andreas Kohlbecker [Thu, 26 Mar 2020 14:58:08 +0000 (15:58 +0100)]
ref #8907 cleaning up test data

4 years agoref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonCom...
Andreas Kohlbecker [Thu, 26 Mar 2020 14:42:40 +0000 (15:42 +0100)]
ref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonComparator - step 2

4 years agoref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonCom...
Andreas Kohlbecker [Thu, 26 Mar 2020 13:10:33 +0000 (14:10 +0100)]
ref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonComparator

4 years agocleanup
a.mueller [Thu, 26 Mar 2020 13:37:39 +0000 (14:37 +0100)]
cleanup

4 years agocleanup
a.mueller [Mon, 23 Mar 2020 21:50:23 +0000 (22:50 +0100)]
cleanup

4 years agocleanup
Andreas Müller [Mon, 23 Mar 2020 21:52:40 +0000 (22:52 +0100)]
cleanup

4 years agoUpdating develop poms back to pre merge state
jenkins [Mon, 23 Mar 2020 12:49:22 +0000 (13:49 +0100)]
Updating develop poms back to pre merge state

4 years agoMerge branch 'master' into develop
jenkins [Mon, 23 Mar 2020 12:49:21 +0000 (13:49 +0100)]
Merge branch 'master' into develop

4 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Mon, 23 Mar 2020 12:49:20 +0000 (13:49 +0100)]
updating develop poms to master versions to avoid merge conflicts

4 years agoMerge branch 'release/5.13.0' 5.13.0
jenkins [Mon, 23 Mar 2020 12:49:14 +0000 (13:49 +0100)]
Merge branch 'release/5.13.0'

4 years agoupdating poms for branch'release/5.13.0' with non-snapshot versions
jenkins [Mon, 23 Mar 2020 12:28:29 +0000 (13:28 +0100)]
updating poms for branch'release/5.13.0' with non-snapshot versions

4 years agoupdating poms for 5.14.0-SNAPSHOT development
jenkins [Mon, 23 Mar 2020 11:41:38 +0000 (12:41 +0100)]
updating poms for 5.14.0-SNAPSHOT development

4 years agofix #8892 fix select statement for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache() origin/release/5.13.0
Andreas Müller [Sat, 21 Mar 2020 00:27:18 +0000 (01:27 +0100)]
fix #8892 fix select statement for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache()

4 years agoref #8892 implementing test for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache()
Andreas Kohlbecker [Fri, 20 Mar 2020 18:44:04 +0000 (19:44 +0100)]
ref  #8892 implementing test for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache()

4 years agoref #8892 loading ranks in hql with LEFT OUTER JOINs
Andreas Kohlbecker [Fri, 20 Mar 2020 18:11:15 +0000 (19:11 +0100)]
ref #8892 loading ranks in hql with LEFT OUTER JOINs

4 years agoref #8891 preliminary remove state from test for categorical data (as saving does...
Andreas Müller [Thu, 19 Mar 2020 23:03:23 +0000 (00:03 +0100)]
ref #8891 preliminary remove state from test for categorical data (as saving does not work yet)

4 years agoref #8891 preliminary remove state from test for categorical data (as saving does...
Andreas Müller [Thu, 19 Mar 2020 22:34:59 +0000 (23:34 +0100)]
ref #8891 preliminary remove state from test for categorical data (as saving does not work yet)

4 years agocleanup
Andreas Müller [Thu, 19 Mar 2020 22:17:39 +0000 (23:17 +0100)]
cleanup

4 years agoref #8891 Add CategoricalData and QuantitativeData to DwCA export
Andreas Müller [Thu, 19 Mar 2020 22:08:49 +0000 (23:08 +0100)]
ref #8891 Add CategoricalData and QuantitativeData to DwCA export

4 years agomove base formatter to base package
Andreas Müller [Fri, 13 Mar 2020 09:03:45 +0000 (10:03 +0100)]
move base formatter to base package

4 years agoref #8328 improving permission check in NameController and fixing check in Registrati...
Andreas Kohlbecker [Wed, 18 Mar 2020 10:54:17 +0000 (11:54 +0100)]
ref #8328 improving permission check in NameController and fixing check in RegistrationController

4 years agoref #8328 hiding name relations with names for unpublished registrations from webserv...
Andreas Kohlbecker [Wed, 18 Mar 2020 10:42:24 +0000 (11:42 +0100)]
ref #8328 hiding name relations with names for unpublished registrations from webservice response

4 years agoref #6970 fixing NPE
Andreas Kohlbecker [Tue, 17 Mar 2020 12:15:58 +0000 (13:15 +0100)]
ref #6970 fixing NPE

4 years agofix #8836 group Editor-Reference implemented (see also ref #8835)
Andreas Kohlbecker [Mon, 16 Mar 2020 16:56:10 +0000 (17:56 +0100)]
fix #8836 group  Editor-Reference implemented (see also ref #8835)

4 years agofix #8427 fixing init strategy for references and authorship
Andreas Kohlbecker [Mon, 16 Mar 2020 11:35:44 +0000 (12:35 +0100)]
fix #8427 fixing init strategy for references and authorship

4 years agofix #8866 fixing incorrect bean initialization which has been indruduced during ref...
Andreas Kohlbecker [Mon, 16 Mar 2020 08:39:51 +0000 (09:39 +0100)]
fix #8866 fixing incorrect bean initialization which has been indruduced during ref #7745

4 years agoref #8892: add missing comparator
Katja Luther [Fri, 13 Mar 2020 13:02:35 +0000 (14:02 +0100)]
ref #8892: add missing comparator

4 years agofix #8892: fix problem of name without rank in taxon search
Katja Luther [Fri, 13 Mar 2020 12:06:20 +0000 (13:06 +0100)]
fix #8892: fix problem of name without rank in taxon search

4 years agofix #8881 Use pure last names (without initials) for in-references of taxon names
Andreas Müller [Tue, 10 Mar 2020 13:15:39 +0000 (14:15 +0100)]
fix #8881 Use pure last names (without initials) for in-references of taxon names

4 years agocleanup
Andreas Müller [Tue, 10 Mar 2020 13:14:43 +0000 (14:14 +0100)]
cleanup

4 years agoref #8839 directly referencing the role field
Andreas Kohlbecker [Tue, 10 Mar 2020 08:35:23 +0000 (09:35 +0100)]
ref #8839 directly referencing the role field

4 years agoref #8044: moveTerm return updateResult and voc search is contains search
Katja Luther [Mon, 9 Mar 2020 13:37:05 +0000 (14:37 +0100)]
ref #8044: moveTerm return updateResult and voc search is contains search

4 years agoref #8867 extending taxon manifest by includeTaxonomicChildren parameter
Andreas Kohlbecker [Mon, 9 Mar 2020 12:41:45 +0000 (13:41 +0100)]
ref #8867 extending taxon manifest by includeTaxonomicChildren parameter

4 years agoref #8867 better presentation of licenses, copyright and access right
Andreas Kohlbecker [Mon, 9 Mar 2020 11:27:34 +0000 (12:27 +0100)]
ref #8867 better presentation of licenses, copyright and access right

4 years agoref #8624: add search on fulltitleCache
Katja Luther [Mon, 9 Mar 2020 09:50:08 +0000 (10:50 +0100)]
ref #8624: add search on fulltitleCache

4 years agoref #8867 showing licenses also in manifest attributions
Andreas Kohlbecker [Mon, 9 Mar 2020 07:24:28 +0000 (08:24 +0100)]
ref #8867 showing licenses also in manifest attributions

4 years agoref #8867 copy image attributions & licenses to the manifest
Andreas Kohlbecker [Sat, 7 Mar 2020 22:06:42 +0000 (23:06 +0100)]
ref #8867 copy image attributions & licenses to the manifest

4 years agoref #8867 dedicated handling of rights and credits
Andreas Kohlbecker [Fri, 6 Mar 2020 17:17:37 +0000 (18:17 +0100)]
ref #8867 dedicated handling of rights and credits

4 years agoref #8867 adding image amd cdm media metadata to the manifest
Andreas Kohlbecker [Fri, 6 Mar 2020 11:03:25 +0000 (12:03 +0100)]
ref #8867 adding image amd cdm media metadata to the manifest

4 years agoref #6970 fixing bug related to undefined values and adding test for ref #7093
Andreas Kohlbecker [Thu, 5 Mar 2020 14:43:25 +0000 (15:43 +0100)]
ref #6970 fixing bug related to undefined values and adding test for ref #7093

4 years agoref #6970 MediaUtils: restoring removed method
Andreas Kohlbecker [Thu, 5 Mar 2020 12:42:24 +0000 (13:42 +0100)]
ref #6970 MediaUtils: restoring removed method

4 years agorevert 1bfcbbafdbce6e . Tests are still not always running.
Andreas Müller [Thu, 5 Mar 2020 11:05:39 +0000 (12:05 +0100)]
revert 1bfcbbafdbce6e . Tests are still not always running.

4 years agoref #8867 iiif REST service controller correctly choosing thumbnail and fullsize...
Andreas Kohlbecker [Thu, 5 Mar 2020 10:08:42 +0000 (11:08 +0100)]
ref #8867 iiif REST service controller correctly choosing thumbnail and fullsize resolutions

4 years agoref #6970 MediaUtils.filterAndOrderMediaRepresentations with improved algorithm
Andreas Kohlbecker [Thu, 5 Mar 2020 10:03:50 +0000 (11:03 +0100)]
ref #6970 MediaUtils.filterAndOrderMediaRepresentations with improved algorithm

4 years agounignore StructuredDescriptionAggregationTest to test
Andreas Müller [Tue, 3 Mar 2020 16:20:28 +0000 (17:20 +0100)]
unignore StructuredDescriptionAggregationTest to test

... if this was really the reason for tests failing from time to time

4 years agoref #5022 removing commented CodehausMuleRepository
Andreas Kohlbecker [Tue, 3 Mar 2020 15:18:57 +0000 (16:18 +0100)]
ref #5022 removing commented CodehausMuleRepository

4 years agousing https for jboss repo
Andreas Kohlbecker [Tue, 3 Mar 2020 13:33:45 +0000 (14:33 +0100)]
using https for jboss repo

4 years agoupdating jboss repo to new location: repository.jboss.org
Andreas Kohlbecker [Tue, 3 Mar 2020 13:17:45 +0000 (14:17 +0100)]
updating jboss repo to new location: repository.jboss.org

4 years agoref #5022 remove spring repositories
Andreas Müller [Mon, 2 Mar 2020 14:26:17 +0000 (15:26 +0100)]
ref #5022 remove spring repositories

4 years agoref #5022 remove (commented) itextpdf repository
Andreas Müller [Mon, 2 Mar 2020 13:32:13 +0000 (14:32 +0100)]
ref #5022 remove (commented) itextpdf repository

4 years agocleanup
Andreas Müller [Mon, 2 Mar 2020 13:31:08 +0000 (14:31 +0100)]
cleanup

4 years agoadd transaction to state in ExcelImportBase
Andreas Müller [Thu, 20 Feb 2020 12:39:41 +0000 (13:39 +0100)]
add transaction to state in ExcelImportBase

4 years agoadd some user types to noHandle for referencingObjects search
Andreas Müller [Thu, 20 Feb 2020 12:38:18 +0000 (13:38 +0100)]
add some user types to noHandle for referencingObjects search

4 years agocleanup
Andreas Müller [Thu, 20 Feb 2020 12:37:25 +0000 (13:37 +0100)]
cleanup

4 years agoref #8047: add preferencePredicate for status order
Katja Luther [Tue, 3 Mar 2020 10:32:05 +0000 (11:32 +0100)]
ref #8047: add preferencePredicate for status order

4 years agofixing multiple bugs which have been reported by SpotBugs
Andreas Kohlbecker [Tue, 3 Mar 2020 10:09:58 +0000 (11:09 +0100)]
fixing multiple bugs which have been reported by SpotBugs

4 years agoref #8867 basic implementation of iiif REST service controller
Andreas Kohlbecker [Sat, 29 Feb 2020 11:07:21 +0000 (12:07 +0100)]
ref #8867 basic implementation of iiif REST service controller

4 years agoref #8868 & ref #5083 bumping jackson to 2.10.2
Andreas Kohlbecker [Sat, 29 Feb 2020 09:41:01 +0000 (10:41 +0100)]
ref #8868 & ref #5083 bumping jackson to 2.10.2

4 years agofix abcd import with missing collectorsFieldNumber - continue
Katja Luther [Thu, 27 Feb 2020 19:13:07 +0000 (20:13 +0100)]
fix abcd import with missing collectorsFieldNumber - continue

4 years agofix abcd import for missing collectorsFieldNumber
Katja Luther [Thu, 27 Feb 2020 12:15:15 +0000 (13:15 +0100)]
fix abcd import for missing collectorsFieldNumber

4 years agoref #8047: add preferencePredicate NUmberOfStatus
Katja Luther [Thu, 27 Feb 2020 12:12:15 +0000 (13:12 +0100)]
ref #8047: add preferencePredicate NUmberOfStatus

4 years agoref #8047: open list of taxa in distribution editor
Katja Luther [Wed, 26 Feb 2020 08:47:30 +0000 (09:47 +0100)]
ref #8047: open list of taxa in distribution editor

4 years agoref #8812 option for measuring remoting method execution duration
Andreas Kohlbecker [Mon, 17 Feb 2020 13:07:37 +0000 (14:07 +0100)]
ref #8812 option for measuring remoting method execution duration

4 years agoallow adding reverse representations to taxon relationship type during import
Andreas Müller [Mon, 10 Feb 2020 16:23:13 +0000 (17:23 +0100)]
allow adding reverse representations to taxon relationship type during import

4 years agocleanup
Andreas Müller [Mon, 10 Feb 2020 16:22:31 +0000 (17:22 +0100)]
cleanup

4 years agoremove commented test dependencies from ext-pom
Andreas Müller [Mon, 10 Feb 2020 16:20:45 +0000 (17:20 +0100)]
remove commented test dependencies from ext-pom

4 years agoref #8562: adapt language preference predicates
Katja Luther [Wed, 5 Feb 2020 12:53:58 +0000 (13:53 +0100)]
ref #8562: adapt language preference predicates

4 years agoref #8044: add missing termcollection dto
Katja Luther [Mon, 3 Feb 2020 08:54:16 +0000 (09:54 +0100)]
ref #8044: add missing termcollection dto

4 years agoref #8044: add service/persistence method to get vocDto for pattern
Katja Luther [Thu, 30 Jan 2020 13:49:20 +0000 (14:49 +0100)]
ref #8044: add service/persistence method to get vocDto for pattern

4 years agofix #8839 toString() for Role
Andreas Kohlbecker [Thu, 30 Jan 2020 10:39:05 +0000 (11:39 +0100)]
fix #8839 toString() for Role

4 years agoref #8733: load descritive dataset before getting specimen
Katja Luther [Tue, 28 Jan 2020 12:57:44 +0000 (13:57 +0100)]
ref #8733: load descritive dataset before getting specimen

4 years agohandle cf determinations correctly
Katja Luther [Tue, 28 Jan 2020 12:55:58 +0000 (13:55 +0100)]
handle cf determinations correctly

4 years agoref #8829 sending http error code in case taxonNode uuid is not found
Andreas Kohlbecker [Mon, 27 Jan 2020 10:40:45 +0000 (11:40 +0100)]
ref #8829 sending http error code in case taxonNode uuid is not found

4 years agocleanup
Andreas Müller [Mon, 27 Jan 2020 09:38:05 +0000 (10:38 +0100)]
cleanup

4 years agoref #8829 fix NPE in TaxonNodeServiceImpl.dto
Andreas Müller [Mon, 27 Jan 2020 09:21:42 +0000 (10:21 +0100)]
ref #8829 fix NPE in TaxonNodeServiceImpl.dto

4 years agoref #8706 moving DateHeaderFilter to cdmlib-remote to make it available for cdm-vaadin
Andreas Kohlbecker [Thu, 23 Jan 2020 14:23:53 +0000 (15:23 +0100)]
ref #8706 moving DateHeaderFilter to cdmlib-remote to make it available for cdm-vaadin

4 years agoref #8791: add unit to rowWrapperDto when actualise quantitative data
Katja Luther [Wed, 22 Jan 2020 14:06:43 +0000 (15:06 +0100)]
ref #8791: add unit to rowWrapperDto when actualise quantitative data

4 years agoref #1447 improve findIdenticalNames
Andreas Müller [Wed, 22 Jan 2020 10:46:04 +0000 (11:46 +0100)]
ref #1447 improve findIdenticalNames

4 years agoref #8624: add dao and service methods to search for titlecache or abbrev title cache
Katja Luther [Wed, 22 Jan 2020 08:59:07 +0000 (09:59 +0100)]
ref #8624: add dao and service methods to search for titlecache or abbrev title cache

4 years agoref #1447 reimplement getParentTaxonNodeDtoForRank() to fetch taxa of specific higher...
Andreas Müller [Tue, 21 Jan 2020 15:56:47 +0000 (16:56 +0100)]
ref #1447 reimplement getParentTaxonNodeDtoForRank() to fetch taxa of specific higher ranks

4 years agoref #1447 add ancestor id splitter to TreeIndex
Andreas Müller [Tue, 21 Jan 2020 15:53:58 +0000 (16:53 +0100)]
ref #1447 add ancestor id splitter to TreeIndex

4 years agocleanup
Andreas Müller [Tue, 21 Jan 2020 13:14:16 +0000 (14:14 +0100)]
cleanup

4 years agocode cleaning
Katja Luther [Tue, 21 Jan 2020 11:28:50 +0000 (12:28 +0100)]
code cleaning

4 years agocleanup and add CdmRegEx
Andreas Müller [Tue, 21 Jan 2020 11:11:40 +0000 (12:11 +0100)]
cleanup and add CdmRegEx

4 years agocleanup
Andreas Müller [Mon, 20 Jan 2020 15:44:49 +0000 (16:44 +0100)]
cleanup

4 years agoadd parameterized HQL API access
Andreas Müller [Mon, 20 Jan 2020 15:44:29 +0000 (16:44 +0100)]
add parameterized HQL API access

4 years agoref #8819: handle cf and aff names in abcd import
Katja Luther [Mon, 20 Jan 2020 13:52:28 +0000 (14:52 +0100)]
ref #8819: handle cf and aff names in abcd import

4 years agoref #8817: workaround for timeperiods with time 00:00:00 for missing time information
Katja Luther [Mon, 20 Jan 2020 13:44:26 +0000 (14:44 +0100)]
ref #8817: workaround for timeperiods with time 00:00:00 for missing time information

4 years agoUpdating develop poms back to pre merge state
jenkins [Mon, 20 Jan 2020 12:36:01 +0000 (13:36 +0100)]
Updating develop poms back to pre merge state

4 years agoMerge branch 'master' into develop
jenkins [Mon, 20 Jan 2020 12:35:59 +0000 (13:35 +0100)]
Merge branch 'master' into develop

4 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Mon, 20 Jan 2020 12:35:58 +0000 (13:35 +0100)]
updating develop poms to master versions to avoid merge conflicts

4 years agoMerge branch 'release/5.12.0' 5.12.0
jenkins [Mon, 20 Jan 2020 12:35:53 +0000 (13:35 +0100)]
Merge branch 'release/5.12.0'

4 years agoupdating poms for branch'release/5.12.0' with non-snapshot versions
jenkins [Mon, 20 Jan 2020 12:19:50 +0000 (13:19 +0100)]
updating poms for branch'release/5.12.0' with non-snapshot versions

4 years agoupdating poms for 5.13.0-SNAPSHOT development
jenkins [Mon, 20 Jan 2020 11:59:41 +0000 (12:59 +0100)]
updating poms for 5.13.0-SNAPSHOT development

4 years agoref #8815 adapt return type for uuidAndTitleCache method in taxonNodeService origin/release/5.12.0
Andreas Müller [Mon, 20 Jan 2020 11:21:30 +0000 (12:21 +0100)]
ref #8815 adapt return type for uuidAndTitleCache method in taxonNodeService

4 years agopreliminary ignore DistributionAggregationTest
Andreas Müller [Mon, 20 Jan 2020 10:45:43 +0000 (11:45 +0100)]
preliminary ignore DistributionAggregationTest

4 years agocleanup
Andreas Müller [Mon, 20 Jan 2020 10:20:46 +0000 (11:20 +0100)]
cleanup