Andreas Müller [Mon, 29 Jun 2015 11:13:02 +0000 (13:13 +0200)]
Further fix DistributionTree.matchesLevels #5041
Andreas Müller [Sun, 28 Jun 2015 14:51:43 +0000 (16:51 +0200)]
Fix DistributionTree.matchesLevels #5041
Andreas Müller [Sun, 28 Jun 2015 12:32:13 +0000 (14:32 +0200)]
Fix label order marker types in imports
Andreas Müller [Sat, 27 Jun 2015 13:13:57 +0000 (15:13 +0200)]
Fix ClassCastException in call to distributionInfo service #5041
Andreas Müller [Fri, 26 Jun 2015 19:25:05 +0000 (21:25 +0200)]
Add getTermByIdInVoc method to vocabularies
Andreas Müller [Fri, 26 Jun 2015 18:04:23 +0000 (20:04 +0200)]
Improve transmission engine parameters for web service (#5040)
Andreas Müller [Fri, 26 Jun 2015 17:24:03 +0000 (19:24 +0200)]
Fix umlaut bug in parser test
Andreas Müller [Fri, 26 Jun 2015 16:59:20 +0000 (18:59 +0200)]
Fix unparsed sections and subsections #4764
Cherian Mathew [Fri, 26 Jun 2015 14:36:45 +0000 (16:36 +0200)]
#5034 Add methods for testing handler / operations architecture
Andreas Müller [Fri, 26 Jun 2015 10:00:31 +0000 (12:00 +0200)]
Fix updateSortindex test for TaxonNode javassist objects
Cherian Mathew [Fri, 26 Jun 2015 09:23:44 +0000 (11:23 +0200)]
#5032 Add new test service for remoting clients
Andreas Müller [Thu, 25 Jun 2015 21:56:21 +0000 (23:56 +0200)]
Fix possible but in FeatureNode sortindex creation
See similar issue in TaxonNode sortindex creation.
Andreas Müller [Thu, 25 Jun 2015 21:47:14 +0000 (23:47 +0200)]
minor
Andreas Müller [Thu, 25 Jun 2015 21:40:22 +0000 (23:40 +0200)]
minor
Andreas Müller [Thu, 25 Jun 2015 21:35:25 +0000 (23:35 +0200)]
Fix sortindex computation in TaxonNode
After commit from 2015-06-18 the sortindex was computed slightly
different. In some cases the parent was not deproxied anymore and
therefore the parent.childNodes always returned the empty list of the
proxy object instead of returning the actual childrens list.
Andreas Kohlbecker [Thu, 25 Jun 2015 16:39:24 +0000 (18:39 +0200)]
some bugfixes in CondensedDistribution composition code - #3907
Andreas Kohlbecker [Thu, 25 Jun 2015 14:28:47 +0000 (16:28 +0200)]
minor documentation cleaning
Andreas Kohlbecker [Thu, 25 Jun 2015 14:23:41 +0000 (16:23 +0200)]
composition of condensed distribution fully implemented - #3907
Andreas Kohlbecker [Wed, 24 Jun 2015 15:13:43 +0000 (17:13 +0200)]
base framework for condensedDistributions implemented - #4911
Andreas Kohlbecker [Wed, 24 Jun 2015 12:54:18 +0000 (14:54 +0200)]
performance: avoiding second distribution filtering when creating the DistributionServiceRequestParameterString - #4911
Andreas Kohlbecker [Wed, 24 Jun 2015 12:22:58 +0000 (14:22 +0200)]
replacing 'non-java-doc by {@inheritDoc}
Andreas Müller [Thu, 25 Jun 2015 13:07:40 +0000 (15:07 +0200)]
Clean up transmission engine and BerlinModelTransformer
Cherian Mathew [Thu, 25 Jun 2015 12:21:37 +0000 (14:21 +0200)]
#5031 Corrected common service / dao collection methods to use uuid + fieldName
Cherian Mathew [Thu, 25 Jun 2015 07:35:46 +0000 (09:35 +0200)]
Fix classloading priority of patched hibernate class
Cherian Mathew [Wed, 24 Jun 2015 15:39:50 +0000 (17:39 +0200)]
#5025 : Add new cdm entity identifier object and use case in taxon node service
Andreas Müller [Wed, 24 Jun 2015 23:10:24 +0000 (01:10 +0200)]
Improve E+M post import methods #3979
Andreas Müller [Wed, 24 Jun 2015 23:08:00 +0000 (01:08 +0200)]
Improve distribution transmission engine for E+M import #3979
Andreas Müller [Wed, 24 Jun 2015 16:52:21 +0000 (18:52 +0200)]
Add publisher role uuid and clean up FirstDataInserter #3979
Andreas Müller [Wed, 24 Jun 2015 15:11:32 +0000 (17:11 +0200)]
Add hidden area related UUIDs to BerlinModelImport #3979 .5
Andreas Müller [Wed, 24 Jun 2015 14:39:40 +0000 (16:39 +0200)]
Add E+M vocabulary uuid to E+M-Transformer
Andreas Müller [Wed, 24 Jun 2015 13:30:13 +0000 (15:30 +0200)]
Add isImport request to import configurator
Cherian Mathew [Wed, 24 Jun 2015 12:16:48 +0000 (14:16 +0200)]
#5025 : Add CdmBase id+Class objects to UpdateResult
Andreas Müller [Tue, 23 Jun 2015 15:49:11 +0000 (17:49 +0200)]
Solve merge conflict for CdmTransactionalIntegrationTest
Andreas Müller [Tue, 23 Jun 2015 10:40:02 +0000 (12:40 +0200)]
Cleanup dao test classes
Andreas Müller [Mon, 22 Jun 2015 20:45:00 +0000 (22:45 +0200)]
Rename remaining occurrences of xxxAuthorTeam #4968
Rename remaining occurrences of combinationAuthorTeam and
basionymAuthorTeam in code and other files
Andreas Müller [Mon, 22 Jun 2015 17:16:20 +0000 (19:16 +0200)]
Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968
Andreas Kohlbecker [Tue, 23 Jun 2015 14:52:41 +0000 (16:52 +0200)]
3.6.2 has just been released, setting version to 3.6.3-SNAPSHOT
Andreas Müller [Tue, 23 Jun 2015 14:40:01 +0000 (16:40 +0200)]
Fix ignored test in TaxonDaoHibernateImplTest #2815
Cherian Mathew [Tue, 23 Jun 2015 10:55:50 +0000 (12:55 +0200)]
#5007 : Correct setting of updated objects when deleting taxon
Andreas Müller [Tue, 23 Jun 2015 10:43:38 +0000 (12:43 +0200)]
Fix ignored test in DescriptionElementDao #2815
Remaining tasks
Andreas Müller [Mon, 22 Jun 2015 15:20:33 +0000 (17:20 +0200)]
Cleanup Identifiable service
Patric Plitzner [Mon, 22 Jun 2015 12:41:32 +0000 (12:41 +0000)]
Copy DeterminationEvent data when moving derivates
Andreas Kohlbecker [Mon, 22 Jun 2015 08:33:10 +0000 (10:33 +0200)]
bumping project version to 3.6.2-SNAPSHOT, 3.6.1 has already been released
Andreas Müller [Fri, 19 Jun 2015 12:51:53 +0000 (14:51 +0200)]
fix titleCache for et al. teams #4967
Andreas Müller [Fri, 19 Jun 2015 11:46:51 +0000 (13:46 +0200)]
add non-absolute test to isServiceAvailable #4587
Andreas Müller [Fri, 19 Jun 2015 10:02:52 +0000 (12:02 +0200)]
fix parsing of names with teams in name and reference #2223
Katja Luther [Thu, 18 Jun 2015 12:59:38 +0000 (12:59 +0000)]
minor
Katja Luther [Thu, 18 Jun 2015 12:50:54 +0000 (12:50 +0000)]
forgot to check in the changes
Katja Luther [Thu, 18 Jun 2015 12:46:20 +0000 (12:46 +0000)]
- add @Audited to all type properties
- add taxonNodeComparator for rank and alphabetical orderedVocabularyDao
- change delete() methods arguments to UUIDs
Andreas Müller [Thu, 18 Jun 2015 11:18:02 +0000 (13:18 +0200)]
Merge branch 'RankSpecificRootNodes-1'
Andreas Müller [Thu, 18 Jun 2015 11:11:45 +0000 (13:11 +0200)]
Fixing test for listRankSpecificRootNodes
Katja Luther [Thu, 18 Jun 2015 09:58:23 +0000 (09:58 +0000)]
add @Audited to the argument type
Andreas Müller [Thu, 18 Jun 2015 09:48:16 +0000 (11:48 +0200)]
fix listRankSpecificRootNodes behavior for ranks in between and some
additional tests
Cherian Mathew [Thu, 18 Jun 2015 09:22:48 +0000 (11:22 +0200)]
Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib
Cherian Mathew [Thu, 18 Jun 2015 09:14:06 +0000 (11:14 +0200)]
IUserService, UserService : added db check methods
remoting-services : moved database service to be included in security filter
Andreas Müller [Thu, 18 Jun 2015 08:31:49 +0000 (10:31 +0200)]
Merge branch 'RankSpecificRootNodes-1'
Andreas Müller [Wed, 17 Jun 2015 17:31:40 +0000 (19:31 +0200)]
Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib
Andreas Müller [Wed, 17 Jun 2015 16:38:34 +0000 (18:38 +0200)]
some additional test for #2778
Andreas Müller [Wed, 17 Jun 2015 16:29:15 +0000 (18:29 +0200)]
add some tests for rankSpecificRootNodes, related to #2778
Andreas Müller [Wed, 17 Jun 2015 15:04:14 +0000 (17:04 +0200)]
Merge branch 'RankSpecificRootNodes-1' of https://dev.e-taxonomy.eu/git/cdmlib into RankSpecificRootNodes-1
Andreas Kohlbecker [Thu, 21 May 2015 09:15:30 +0000 (11:15 +0200)]
avoiding LEFT OUTER JOIN by splitting query in two
Andreas Kohlbecker [Wed, 17 Jun 2015 14:23:38 +0000 (16:23 +0200)]
adding support for https in UriUtils
Andreas Kohlbecker [Thu, 21 May 2015 09:15:30 +0000 (11:15 +0200)]
avoiding LEFT OUTER JOIN by splitting query in two
Andreas Müller [Wed, 17 Jun 2015 13:07:24 +0000 (15:07 +0200)]
cleanup dataset
Andreas Müller [Wed, 17 Jun 2015 12:42:09 +0000 (14:42 +0200)]
fix testdata for #2778
Andreas Müller [Wed, 17 Jun 2015 12:34:25 +0000 (14:34 +0200)]
fixing missing LanguageString in test dataset for #2778. However, test
still fails.
Patric Plitzner [Wed, 17 Jun 2015 11:07:58 +0000 (11:07 +0000)]
test commit
Andreas Kohlbecker [Tue, 16 Jun 2015 16:05:29 +0000 (16:05 +0000)]
only a test
Andreas Kohlbecker [Tue, 16 Jun 2015 16:05:12 +0000 (16:05 +0000)]
only a test
Andreas Müller [Tue, 16 Jun 2015 14:20:04 +0000 (16:20 +0200)]
fix #4976 Titlecache for new vocabularies not filled correctly
Andreas Müller [Tue, 16 Jun 2015 14:16:08 +0000 (16:16 +0200)]
minor cleanup
Andreas Müller [Tue, 16 Jun 2015 14:14:57 +0000 (16:14 +0200)]
minor cleanup
Cherian Mathew [Mon, 15 Jun 2015 13:44:07 +0000 (15:44 +0200)]
merging test file from remote master
Cherian Mathew [Mon, 15 Jun 2015 12:24:14 +0000 (14:24 +0200)]
DescriptionServiceImpl : added dao delete of description
OccurrenceServiceDeepDeleteTest : removed extra delete call
TaxonServiceImplTest : added testing of taxon.removeDescription
Cherian Mathew [Fri, 12 Jun 2015 16:35:51 +0000 (18:35 +0200)]
correcting wrong merge
Cherian Mathew [Fri, 12 Jun 2015 15:39:08 +0000 (17:39 +0200)]
pushing delete to end of method to fix problem with merge
Cherian Mathew [Mon, 15 Jun 2015 12:47:42 +0000 (14:47 +0200)]
Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib
Andreas Kohlbecker [Mon, 15 Jun 2015 12:09:30 +0000 (14:09 +0200)]
implementing modifications requested in #2880
Patric Plitzner [Mon, 15 Jun 2015 11:36:53 +0000 (11:36 +0000)]
- correctly cleaned up between test invocations
Patric Plitzner [Mon, 15 Jun 2015 11:33:50 +0000 (11:33 +0000)]
- added missing table column to test DB
Andreas Kohlbecker [Mon, 15 Jun 2015 10:23:22 +0000 (12:23 +0200)]
implementing test to reproduce issue #2778 - the test runs succesfully, so the issue is already solved
Andreas Kohlbecker [Mon, 15 Jun 2015 10:20:15 +0000 (12:20 +0200)]
providing a example implementation of createTestDataSet()
Patric Plitzner [Mon, 15 Jun 2015 07:05:35 +0000 (07:05 +0000)]
- added test for "ignoreAuthorship" option
Patric Plitzner [Mon, 15 Jun 2015 07:05:00 +0000 (07:05 +0000)]
- text formatting
Patric Plitzner [Mon, 15 Jun 2015 07:04:50 +0000 (07:04 +0000)]
- re-enabled dna quality parsing
Cherian Mathew [Fri, 12 Jun 2015 10:50:25 +0000 (12:50 +0200)]
Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib into remoting-4.0
Conflicts:
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java
Cherian Mathew [Fri, 12 Jun 2015 10:48:34 +0000 (12:48 +0200)]
reverting back last change
Cherian Mathew [Fri, 12 Jun 2015 10:26:37 +0000 (12:26 +0200)]
CdmCacher : corrected initializing of default cache
defaultApplicationContext : replaced component scan of cache with specific bean initialization
Andreas Kohlbecker [Thu, 11 Jun 2015 12:33:02 +0000 (14:33 +0200)]
fixing bug in last commit regarding #4974 (AdvancedBeanInitializer causes error with eu.etaxonomy.cdm.model.description.KeyStatement)
Andreas Kohlbecker [Thu, 11 Jun 2015 11:16:30 +0000 (13:16 +0200)]
fixing #4974 (AdvancedBeanInitializer causes error with eu.etaxonomy.cdm.model.description.KeyStatement)
Katja Luther [Thu, 11 Jun 2015 09:31:20 +0000 (09:31 +0000)]
adapt csv export for caryophyllales
Andreas M��ller [Tue, 9 Jun 2015 14:46:52 +0000 (14:46 +0000)]
minor
Patric Plitzner [Tue, 9 Jun 2015 14:13:04 +0000 (14:13 +0000)]
- added test to ignore because data base conflicts for later tests
Patric Plitzner [Tue, 9 Jun 2015 13:59:48 +0000 (13:59 +0000)]
- added test to ignore because data base conflicts for later tests
Patric Plitzner [Tue, 9 Jun 2015 12:23:28 +0000 (12:23 +0000)]
- cleanup DB after test run
Andreas M��ller [Tue, 9 Jun 2015 10:52:31 +0000 (10:52 +0000)]
minor
Andreas M��ller [Tue, 9 Jun 2015 10:51:47 +0000 (10:51 +0000)]
add override
Andreas Kohlbecker [Tue, 9 Jun 2015 10:19:33 +0000 (12:19 +0200)]
disabling sql tracing in logs
Andreas Kohlbecker [Tue, 9 Jun 2015 10:18:40 +0000 (12:18 +0200)]
fixing #4965 unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
Patric Plitzner [Tue, 9 Jun 2015 07:40:41 +0000 (07:40 +0000)]
- added more ggbn ABCD parameters to import and test