Andreas Müller [Wed, 22 Sep 2021 12:05:17 +0000 (14:05 +0200)]
ref #6387 test that convar is not a cultivar
Andreas Müller [Wed, 22 Sep 2021 12:04:29 +0000 (14:04 +0200)]
ref #9771Additional ignore on seupClass, just in case
Andreas Müller [Wed, 22 Sep 2021 10:45:13 +0000 (12:45 +0200)]
ref #9771 first incomplete version of Cdm2CdmVocabularyImport (cont.)
Andreas Müller [Wed, 22 Sep 2021 10:20:05 +0000 (12:20 +0200)]
cleanup
Andreas Müller [Wed, 22 Sep 2021 10:19:55 +0000 (12:19 +0200)]
ref #9771 first incomplete version of Cdm2CdmVocabularyImport
Andreas Müller [Wed, 22 Sep 2021 10:03:31 +0000 (12:03 +0200)]
ref #9778, ref #9755, ref #9754, ref # 9757 split grex and add new ranks lusus, subproles and subgrex
Katja Luther [Wed, 22 Sep 2021 06:59:31 +0000 (08:59 +0200)]
ref #9772: fix missing unit
Andreas Müller [Tue, 21 Sep 2021 20:44:46 +0000 (22:44 +0200)]
ref #9754 handle infraspecific epithets better
Andreas Müller [Tue, 21 Sep 2021 19:52:50 +0000 (21:52 +0200)]
ref #9754 handle null values for cultivar epis better
Andreas Müller [Tue, 21 Sep 2021 19:52:12 +0000 (21:52 +0200)]
cleanup
Andreas Müller [Tue, 21 Sep 2021 18:59:34 +0000 (20:59 +0200)]
ref #9757 fix emptying name before parsing
Andreas Müller [Tue, 21 Sep 2021 18:05:18 +0000 (20:05 +0200)]
ref #9757 fix cultivar parser test
Andreas Müller [Tue, 21 Sep 2021 17:56:45 +0000 (19:56 +0200)]
ref #9754 support author and nom. ref. handling for cultivar formatting
Andreas Müller [Tue, 21 Sep 2021 17:33:12 +0000 (19:33 +0200)]
ref #9757 improve cultivar parser
* parse with referencedName()
* include author parsing
* include nom. ref. parsing
Andreas Müller [Tue, 21 Sep 2021 15:12:30 +0000 (17:12 +0200)]
cleanup
Katja Luther [Tue, 21 Sep 2021 14:02:19 +0000 (16:02 +0200)]
ref #9772: smaller changes
Katja Luther [Tue, 21 Sep 2021 13:41:20 +0000 (15:41 +0200)]
ref #9772: deproxy the term in getTermByClassAndUUID
Andreas Kohlbecker [Tue, 21 Sep 2021 11:57:25 +0000 (13:57 +0200)]
ref #7099 documentation on the intendet purpose of CdmAuthority
Andreas Müller [Tue, 21 Sep 2021 11:04:15 +0000 (13:04 +0200)]
ref #7099 javadoc added to CdmAuthority
Andreas Müller [Tue, 21 Sep 2021 10:44:39 +0000 (12:44 +0200)]
ref #7099 implement toString and isEqual for CdmAuthority
Andreas Müller [Tue, 21 Sep 2021 10:30:59 +0000 (12:30 +0200)]
cleanup
Katja Luther [Mon, 20 Sep 2021 08:10:51 +0000 (10:10 +0200)]
ref #9710: avoid NPEs
Andreas Kohlbecker [Mon, 20 Sep 2021 08:05:19 +0000 (10:05 +0200)]
ref #9758 application.properties for the production environement
Andreas Müller [Fri, 17 Sep 2021 08:24:10 +0000 (10:24 +0200)]
fix #825 rename method that searches by representation label in term dao
Andreas Müller [Fri, 17 Sep 2021 08:23:04 +0000 (10:23 +0200)]
minor
Andreas Müller [Fri, 17 Sep 2021 08:00:55 +0000 (10:00 +0200)]
cleanup
Andreas Müller [Fri, 17 Sep 2021 08:00:45 +0000 (10:00 +0200)]
ref #9014 allow any word with number as detail in parser
Andreas Müller [Fri, 17 Sep 2021 05:52:25 +0000 (07:52 +0200)]
cleanup
Andreas Müller [Fri, 17 Sep 2021 05:50:07 +0000 (07:50 +0200)]
cleanup
Andreas Müller [Fri, 17 Sep 2021 05:26:12 +0000 (07:26 +0200)]
ref #9758 try to fix dependency issue in mailing test dependencies
Andreas Müller [Fri, 17 Sep 2021 05:02:23 +0000 (07:02 +0200)]
cleanup
Andreas Kohlbecker [Thu, 16 Sep 2021 15:10:14 +0000 (17:10 +0200)]
ref #9758 option to define custom configurations in test and production systems#
Andreas Kohlbecker [Thu, 16 Sep 2021 14:40:30 +0000 (16:40 +0200)]
ref #9758 configuration for sending emails with smtp properties
Andreas Kohlbecker [Thu, 16 Sep 2021 13:44:16 +0000 (15:44 +0200)]
fix #9758 configuration for sending emails with JavaMailSenderImpl
Andreas Kohlbecker [Tue, 14 Sep 2021 19:09:23 +0000 (21:09 +0200)]
note on manual anttask execution
Andreas Müller [Thu, 16 Sep 2021 10:02:05 +0000 (12:02 +0200)]
update cached cdm mapping to 5.27.0
Andreas Müller [Thu, 16 Sep 2021 09:09:49 +0000 (11:09 +0200)]
update cdmlib test H2 to 5.27.0
Andreas Müller [Thu, 16 Sep 2021 09:04:52 +0000 (11:04 +0200)]
minor
Andreas Müller [Thu, 16 Sep 2021 08:59:03 +0000 (10:59 +0200)]
change to model version 5.27.0
Andreas Müller [Thu, 16 Sep 2021 08:58:30 +0000 (10:58 +0200)]
ref #9761 move cultivar info to new group field where necessary
Andreas Müller [Thu, 16 Sep 2021 08:57:16 +0000 (10:57 +0200)]
ref #7640 fix update script for ISO country update
Andreas Müller [Thu, 16 Sep 2021 08:55:52 +0000 (10:55 +0200)]
ref #9755 update cultivarName->cultivarEpithet
Andreas Müller [Wed, 15 Sep 2021 22:43:15 +0000 (00:43 +0200)]
ref #7640 include titleCache for country label update
Andreas Müller [Wed, 15 Sep 2021 21:20:19 +0000 (23:20 +0200)]
ref #9757 fix cultivar group parser text encoding
Andreas Müller [Wed, 15 Sep 2021 21:19:25 +0000 (23:19 +0200)]
cleanup
Andreas Müller [Wed, 15 Sep 2021 21:19:07 +0000 (23:19 +0200)]
ref #7640, ref #4209 update country labels and split label from official title (still handled in description)
Andreas Müller [Wed, 15 Sep 2021 19:35:15 +0000 (21:35 +0200)]
ref #9755 add abbrev to cultivar group representation
Andreas Müller [Wed, 15 Sep 2021 11:59:13 +0000 (13:59 +0200)]
ref #9761 add cultivarGroup column
Katja Luther [Wed, 15 Sep 2021 10:28:43 +0000 (12:28 +0200)]
ref #9710: switch to dtos for descriptive data set and descriptions for character matrix
Andreas Müller [Wed, 15 Sep 2021 09:30:13 +0000 (11:30 +0200)]
fix #9759 fix not existing protectedCache field in persistence matcher
Andreas Müller [Wed, 15 Sep 2021 08:55:36 +0000 (10:55 +0200)]
fix #9759 fix missing deduplication for parsed person (and maybe also team)
Andreas Müller [Wed, 15 Sep 2021 08:42:06 +0000 (10:42 +0200)]
cleanup
Andreas Müller [Tue, 14 Sep 2021 12:33:32 +0000 (14:33 +0200)]
ref #9757 further improve cultivar parsing
Andreas Müller [Tue, 14 Sep 2021 12:32:37 +0000 (14:32 +0200)]
cleanup
Andreas Müller [Tue, 14 Sep 2021 10:34:52 +0000 (12:34 +0200)]
ref #9754 , ref #9757 further improve cultivar name parsing and formatting
Andreas Müller [Tue, 14 Sep 2021 07:49:24 +0000 (09:49 +0200)]
ref #9757 first implementation of cultivar parsing
Andreas Müller [Tue, 14 Sep 2021 07:45:43 +0000 (09:45 +0200)]
cleanup
Andreas Müller [Tue, 14 Sep 2021 07:43:45 +0000 (09:43 +0200)]
ref #9754 first implementation for cultivar formatter
Andreas Müller [Mon, 13 Sep 2021 11:39:38 +0000 (13:39 +0200)]
ref #9747 add getCdmVocabularyUuids to Language
Andreas Müller [Mon, 13 Sep 2021 11:26:22 +0000 (13:26 +0200)]
ref #9747 add getCdmVocabularyUuids to Language
Andreas Müller [Mon, 13 Sep 2021 11:09:56 +0000 (13:09 +0200)]
cleanup
Katja Luther [Thu, 9 Sep 2021 12:08:55 +0000 (14:08 +0200)]
improve attribute names and handle all name identifier in cdmlight
Andreas Müller [Thu, 9 Sep 2021 11:22:18 +0000 (13:22 +0200)]
ref #9752 make it possible to add source with original information for imports
Andreas Müller [Thu, 9 Sep 2021 11:21:35 +0000 (13:21 +0200)]
ref #7646 , ref #9752 make "hort." parseable
Andreas Müller [Thu, 9 Sep 2021 11:13:13 +0000 (13:13 +0200)]
ref #9752 remove warning for getTitleWithoutYearAndAuthor for some refTypes
Andreas Kohlbecker [Thu, 9 Sep 2021 10:36:56 +0000 (12:36 +0200)]
fix #9706 reducing field visibility of sections to authors, pages and inReference
Andreas Kohlbecker [Thu, 9 Sep 2021 08:38:41 +0000 (10:38 +0200)]
ref #9701 method to find the highest type status in a TypeDesignationWorkingSet
Andreas Kohlbecker [Thu, 9 Sep 2021 08:33:43 +0000 (10:33 +0200)]
ref #9701 taggedText to string method with exclude option
Andreas Kohlbecker [Wed, 8 Sep 2021 12:16:49 +0000 (14:16 +0200)]
fix #8438 removing all featureTree/* web services
Andreas Müller [Tue, 7 Sep 2021 13:28:37 +0000 (15:28 +0200)]
ref #9747 add language to TermType.getEmptyDefinedTermBase
Andreas Müller [Fri, 3 Sep 2021 09:18:45 +0000 (11:18 +0200)]
cleanup
Andreas Müller [Wed, 1 Sep 2021 11:10:39 +0000 (13:10 +0200)]
Cleanup and javadoc
Andreas Müller [Wed, 1 Sep 2021 11:08:10 +0000 (13:08 +0200)]
ref #9729, #9728, #9664 remove deprecated method setNomenclaturalTitle
Andreas Müller [Wed, 1 Sep 2021 11:03:29 +0000 (13:03 +0200)]
ref #9729, #9728, #9664 remove calls to deprecated method setNomenclaturalTitle
Andreas Müller [Wed, 1 Sep 2021 10:47:14 +0000 (12:47 +0200)]
ref #9729, #9728, #9664 Adapt handling of nomenclaturalTitleCache setter and javadoc
Andreas Müller [Wed, 1 Sep 2021 10:37:11 +0000 (12:37 +0200)]
cleanup
Andreas Müller [Mon, 30 Aug 2021 18:20:34 +0000 (20:20 +0200)]
cleanup
Katja Luther [Mon, 23 Aug 2021 09:25:34 +0000 (11:25 +0200)]
ref #9737: adapt test to dummy lines -continue
Katja Luther [Mon, 23 Aug 2021 09:19:20 +0000 (11:19 +0200)]
ref #9737: adapt test to dummy lines
Katja Luther [Mon, 23 Aug 2021 08:04:38 +0000 (10:04 +0200)]
ref #9737: add dummy lines to cdmLight export
Andreas Müller [Sat, 21 Aug 2021 12:20:00 +0000 (14:20 +0200)]
fix #9738 fix recursion for only titleCache protected nomenclatural source
Katja Luther [Wed, 18 Aug 2021 10:49:44 +0000 (12:49 +0200)]
adapted interface
Katja Luther [Wed, 18 Aug 2021 10:46:55 +0000 (12:46 +0200)]
only log lazy initialisation exception while remove null from collection
Katja Luther [Tue, 17 Aug 2021 10:38:02 +0000 (12:38 +0200)]
adaption to cleaned code
Katja Luther [Tue, 17 Aug 2021 10:01:03 +0000 (12:01 +0200)]
ref #9736: add name_fk and preferred source fk to specimen type table
Katja Luther [Mon, 16 Aug 2021 10:28:48 +0000 (12:28 +0200)]
code cleaning
Katja Luther [Mon, 16 Aug 2021 08:02:36 +0000 (10:02 +0200)]
ref #9736: new table for (specimen)typedesignations
Katja Luther [Thu, 12 Aug 2021 09:36:23 +0000 (11:36 +0200)]
ref #9340, #9734, #9668: result should be of type DeleteResult
Katja Luther [Thu, 12 Aug 2021 06:32:16 +0000 (08:32 +0200)]
missed to add adapted test
Katja Luther [Wed, 11 Aug 2021 12:48:27 +0000 (14:48 +0200)]
ref #9340, #9734, #9668: further improvements for configurable sec handling during taxon(base) operations
Katja Luther [Tue, 10 Aug 2021 09:49:33 +0000 (11:49 +0200)]
ref #9704: fix NPE for * in search
Katja Luther [Tue, 10 Aug 2021 08:15:31 +0000 (10:15 +0200)]
ref #9735: add type specimen to specimen table
jenkins [Tue, 3 Aug 2021 14:06:45 +0000 (16:06 +0200)]
Updating develop poms back to pre merge state
jenkins [Tue, 3 Aug 2021 14:06:44 +0000 (16:06 +0200)]
Merge branch 'master' into develop
jenkins [Tue, 3 Aug 2021 14:06:43 +0000 (16:06 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Tue, 3 Aug 2021 14:06:38 +0000 (16:06 +0200)]
Merge branch 'release/5.26.0'
jenkins [Tue, 3 Aug 2021 13:49:30 +0000 (15:49 +0200)]
updating poms for branch'release/5.26.0' with non-snapshot versions
jenkins [Tue, 3 Aug 2021 13:11:45 +0000 (15:11 +0200)]
Updating develop poms back to pre merge state
jenkins [Tue, 3 Aug 2021 13:11:44 +0000 (15:11 +0200)]
Merge branch 'master' into develop
jenkins [Tue, 3 Aug 2021 13:11:43 +0000 (15:11 +0200)]
updating develop poms to master versions to avoid merge conflicts