Andreas Kohlbecker [Fri, 13 Jan 2012 15:05:35 +0000 (15:05 +0000)]
fixing bug associated with getTaxaByCommonName(); benchmarking taxa by common name hql vs lucene
Andreas Müller [Fri, 13 Jan 2012 10:35:48 +0000 (10:35 +0000)]
exclude updated_when from TaxonName
Andreas Müller [Fri, 13 Jan 2012 09:48:13 +0000 (09:48 +0000)]
Object change mapper for PESI and empty epithet bugfix and empty hybrid formula bugfix
Andreas Kohlbecker [Thu, 12 Jan 2012 17:09:10 +0000 (17:09 +0000)]
hibernate fulltext search & refactoring getTaxaByName*() method headers
Andreas Müller [Thu, 12 Jan 2012 12:13:38 +0000 (12:13 +0000)]
move DbExportMappers to common.mapping.out
Andreas Müller [Thu, 12 Jan 2012 12:04:29 +0000 (12:04 +0000)]
refactor export mapping
Katja Luther [Thu, 12 Jan 2012 11:17:22 +0000 (11:17 +0000)]
countTaxaByName harmonized with find method (replace Class <? extends TaxonBase> parameter with boolean parameters for synonyms, taxa and misapplied names)
Andreas Müller [Thu, 12 Jan 2012 09:47:41 +0000 (09:47 +0000)]
bugfix compile error in SOurce
Andreas Müller [Wed, 11 Jan 2012 17:32:14 +0000 (17:32 +0000)]
minor
Andreas Müller [Wed, 11 Jan 2012 16:57:22 +0000 (16:57 +0000)]
more generic for export io classes
Andreas Müller [Wed, 11 Jan 2012 16:20:36 +0000 (16:20 +0000)]
some library updates for PESI export
Andreas Müller [Wed, 11 Jan 2012 16:19:56 +0000 (16:19 +0000)]
return type for getTaggedText
Andreas Müller [Wed, 11 Jan 2012 16:19:30 +0000 (16:19 +0000)]
convenience methods to TaggedText and TagEnum
Andreas Müller [Wed, 11 Jan 2012 14:53:51 +0000 (14:53 +0000)]
toString for TaggedText
Katja Luther [Wed, 11 Jan 2012 10:50:00 +0000 (10:50 +0000)]
changes for bugs and problems in search for misapplied names (#2648)
Andreas Müller [Wed, 11 Jan 2012 09:39:30 +0000 (09:39 +0000)]
use io application controler
Andreas Müller [Tue, 10 Jan 2012 14:06:24 +0000 (14:06 +0000)]
minor
Andreas Müller [Tue, 10 Jan 2012 13:36:37 +0000 (13:36 +0000)]
better logging for occurrences missing source number
l.morris [Tue, 10 Jan 2012 10:06:52 +0000 (10:06 +0000)]
Added MODIFIABLE to MarkerType and MarkerType.csv
Andreas Müller [Mon, 9 Jan 2012 17:38:55 +0000 (17:38 +0000)]
update erms import (e.g. lsid mapper)
Andreas Müller [Mon, 9 Jan 2012 17:37:21 +0000 (17:37 +0000)]
bugfix for ordered term import
Andreas Müller [Mon, 9 Jan 2012 12:22:22 +0000 (12:22 +0000)]
latest version of delete result
Andreas Müller [Mon, 9 Jan 2012 12:22:00 +0000 (12:22 +0000)]
base class for delete configurator
Andreas Müller [Mon, 9 Jan 2012 12:21:26 +0000 (12:21 +0000)]
new term delete implementation
Andreas Müller [Fri, 6 Jan 2012 16:33:07 +0000 (16:33 +0000)]
minor
Andreas Müller [Fri, 6 Jan 2012 16:32:43 +0000 (16:32 +0000)]
handling missing id case for object creation mapper
Andreas Müller [Fri, 6 Jan 2012 14:28:14 +0000 (14:28 +0000)]
improve error handling for SQException
Andreas Müller [Fri, 6 Jan 2012 14:27:25 +0000 (14:27 +0000)]
improve error handling in for no such method exception
Andreas Müller [Fri, 6 Jan 2012 14:26:27 +0000 (14:26 +0000)]
improve logging for errors in mapper (not yet finished)
Andreas Müller [Fri, 6 Jan 2012 13:52:23 +0000 (13:52 +0000)]
improve error message for exceptions in ResultSetPartitioner
Andreas Müller [Fri, 6 Jan 2012 13:50:14 +0000 (13:50 +0000)]
error handling send to logger in import mapper
Andreas Müller [Fri, 6 Jan 2012 13:29:49 +0000 (13:29 +0000)]
improved logging for ordered terms compare
Andreas Müller [Fri, 6 Jan 2012 11:56:12 +0000 (11:56 +0000)]
bugfix for common name import
Andreas Müller [Fri, 6 Jan 2012 11:00:22 +0000 (11:00 +0000)]
bugfix for webmarker import
Andreas Müller [Thu, 5 Jan 2012 23:21:45 +0000 (23:21 +0000)]
minor
Andreas Müller [Thu, 5 Jan 2012 23:19:47 +0000 (23:19 +0000)]
improve logging for OrderedTerm compare
Andreas Müller [Thu, 5 Jan 2012 23:18:50 +0000 (23:18 +0000)]
bugfixes for CommonNameImport and WebMarkerCategory import
Andreas Müller [Thu, 5 Jan 2012 16:11:09 +0000 (16:11 +0000)]
log missing occurrence source references in one set
Andreas Müller [Thu, 5 Jan 2012 15:53:19 +0000 (15:53 +0000)]
some improvements on taxon relation logging
Andreas Müller [Thu, 5 Jan 2012 15:52:28 +0000 (15:52 +0000)]
some logging improvements for common names
Andreas Müller [Thu, 5 Jan 2012 14:52:37 +0000 (14:52 +0000)]
minor
Andreas Müller [Thu, 5 Jan 2012 14:51:47 +0000 (14:51 +0000)]
change order of AuthorTeam filter calls (maybe this reduces deadlock probability)
Andreas Kohlbecker [Thu, 5 Jan 2012 13:50:02 +0000 (13:50 +0000)]
turning System.err into logger.debug
Andreas Kohlbecker [Thu, 5 Jan 2012 13:43:05 +0000 (13:43 +0000)]
webservice portion of #2648 (search for misapplied names implemented)
Andreas Müller [Thu, 5 Jan 2012 12:06:52 +0000 (12:06 +0000)]
Bugfix for filtered AuthorTeam import
Andreas Kohlbecker [Thu, 5 Jan 2012 10:51:05 +0000 (10:51 +0000)]
fixing aspectj compile time error
Andreas Kohlbecker [Thu, 5 Jan 2012 09:14:48 +0000 (09:14 +0000)]
pom forgotten - sorry
Andreas Müller [Thu, 5 Jan 2012 09:08:39 +0000 (09:08 +0000)]
bugfix for authorTeam filter
Andreas Müller [Wed, 4 Jan 2012 23:21:21 +0000 (23:21 +0000)]
add author and authorTeam Filter
Andreas Müller [Wed, 4 Jan 2012 22:49:13 +0000 (22:49 +0000)]
improve common name import
Andreas Müller [Wed, 4 Jan 2012 16:53:10 +0000 (16:53 +0000)]
add includeEmpty vocs (#2704)
Andreas Müller [Wed, 4 Jan 2012 12:57:25 +0000 (12:57 +0000)]
rename DeletionResult -> DeleteResult & improve TermDeletionConfigurator
Andreas Müller [Wed, 4 Jan 2012 09:22:49 +0000 (09:22 +0000)]
added deletion result class and term deletion configurator #2703 and others.
Andreas Müller [Tue, 3 Jan 2012 18:55:29 +0000 (18:55 +0000)]
implement getTermVocabulariesByTermClasses also for subclasses (#2704)
Andreas Müller [Mon, 2 Jan 2012 22:23:04 +0000 (22:23 +0000)]
added EM areas turkey and caucasia
Andreas Müller [Mon, 2 Jan 2012 22:09:31 +0000 (22:09 +0000)]
bugfix for occurrenceSource import filter
Andreas Müller [Mon, 2 Jan 2012 17:08:02 +0000 (17:08 +0000)]
Single classification for E+M import && some occurrence import fixes
Andreas Müller [Mon, 2 Jan 2012 14:01:22 +0000 (14:01 +0000)]
some bugfixes for E+M import (occurrences, occ sources, webmarker)
Andreas Müller [Wed, 21 Dec 2011 17:27:26 +0000 (17:27 +0000)]
bugfix for commonName import
Andreas Kohlbecker [Wed, 21 Dec 2011 15:13:41 +0000 (15:13 +0000)]
harmonising whitespace tab->space
Andreas Kohlbecker [Wed, 21 Dec 2011 15:12:26 +0000 (15:12 +0000)]
harmonising whitespace tab->space
Andreas Kohlbecker [Wed, 21 Dec 2011 15:09:38 +0000 (15:09 +0000)]
lucene search: multi instance configuration fixed, native lucene search, ....
Andreas Müller [Wed, 21 Dec 2011 14:10:39 +0000 (14:10 +0000)]
filtering common names and updating validation
Andreas Müller [Wed, 21 Dec 2011 10:51:23 +0000 (10:51 +0000)]
bugfix for name status import
Andreas Müller [Wed, 21 Dec 2011 10:50:49 +0000 (10:50 +0000)]
add filters to some validations
Katja Luther [Wed, 21 Dec 2011 10:50:15 +0000 (10:50 +0000)]
Andreas Müller [Tue, 20 Dec 2011 22:12:12 +0000 (22:12 +0000)]
refactor reference import
Andreas Müller [Tue, 20 Dec 2011 22:09:13 +0000 (22:09 +0000)]
bugfix for nameFacts, nameStatus and nameRel import
Andreas Müller [Tue, 20 Dec 2011 21:44:18 +0000 (21:44 +0000)]
minor
Andreas Müller [Tue, 20 Dec 2011 21:33:03 +0000 (21:33 +0000)]
add occurrence filter for BM export (2)
Andreas Müller [Tue, 20 Dec 2011 21:27:57 +0000 (21:27 +0000)]
add occurrence filter for BM export
Andreas Müller [Tue, 20 Dec 2011 20:51:31 +0000 (20:51 +0000)]
bugfix for facts filter
Andreas Müller [Tue, 20 Dec 2011 15:33:11 +0000 (15:33 +0000)]
minor
Andreas Müller [Tue, 20 Dec 2011 11:55:49 +0000 (11:55 +0000)]
some more filter on nameFacts, nomStatus, reference and taxonNameRel for BM export
Andreas Müller [Mon, 19 Dec 2011 20:49:37 +0000 (20:49 +0000)]
improve facts filter for BM import
Andreas Müller [Mon, 19 Dec 2011 18:27:21 +0000 (18:27 +0000)]
add facts filter for BM import
Andreas Müller [Mon, 19 Dec 2011 17:45:18 +0000 (17:45 +0000)]
minor
Andreas Müller [Mon, 19 Dec 2011 17:44:12 +0000 (17:44 +0000)]
catch URI exception for Reference
Andreas Müller [Mon, 19 Dec 2011 15:12:37 +0000 (15:12 +0000)]
add name and reference filter to BM import
Andreas Kohlbecker [Thu, 15 Dec 2011 09:58:55 +0000 (09:58 +0000)]
updating documentation
Andreas Müller [Thu, 8 Dec 2011 09:35:59 +0000 (09:35 +0000)]
bugfix for namestatus import with missing type
Andreas Müller [Wed, 7 Dec 2011 22:32:28 +0000 (22:32 +0000)]
E+M with E+M taxa only (first version)
Andreas Müller [Wed, 7 Dec 2011 20:05:29 +0000 (20:05 +0000)]
E+M with E+M taxa only (first version)
Andreas Müller [Wed, 7 Dec 2011 17:27:44 +0000 (17:27 +0000)]
taxonTable generic
Andreas Müller [Wed, 7 Dec 2011 17:20:27 +0000 (17:20 +0000)]
add state to getIdQuery
Andreas Müller [Wed, 7 Dec 2011 15:23:42 +0000 (15:23 +0000)]
Some bugfixes to Berlin Model import to enable E+M import
Andreas Müller [Wed, 7 Dec 2011 14:47:19 +0000 (14:47 +0000)]
error handling in ResultSetPartitioner
Katja Luther [Wed, 7 Dec 2011 12:05:32 +0000 (12:05 +0000)]
adapt the search to be able to find misapplied names: to include misapplied names use the new configurator attribute doIncludeMisappliedNames
Andreas Müller [Tue, 6 Dec 2011 13:08:49 +0000 (13:08 +0000)]
test to better load terms in ImportBase
Katja Luther [Tue, 6 Dec 2011 12:49:45 +0000 (12:49 +0000)]
add method to find taxon for misapplied name
Andreas Müller [Mon, 5 Dec 2011 08:48:16 +0000 (08:48 +0000)]
bugfix and public method for ExcelUtils
Andreas Müller [Sun, 4 Dec 2011 06:38:11 +0000 (06:38 +0000)]
better error handling for ExcelUtils
Andreas Kohlbecker [Tue, 29 Nov 2011 14:26:36 +0000 (14:26 +0000)]
related to #2664 (Specimen maps are not shown in cyprus dev portal) - now the occurrence map is colored
Andreas Müller [Fri, 25 Nov 2011 08:33:29 +0000 (08:33 +0000)]
updates to DwcaImport
Andreas Kohlbecker [Thu, 24 Nov 2011 16:51:09 +0000 (16:51 +0000)]
cdmlib side fix for #2679 (Improve Concept Relationships for Dataportal)
Andreas Kohlbecker [Thu, 24 Nov 2011 11:01:29 +0000 (11:01 +0000)]
cdmlib part of fixing #2482 (Dataportal does not show features)
Andreas Müller [Wed, 23 Nov 2011 16:56:59 +0000 (16:56 +0000)]
some updates to markup import
Andreas Müller [Wed, 23 Nov 2011 16:55:18 +0000 (16:55 +0000)]
update DwcaImport
Andreas Müller [Wed, 23 Nov 2011 16:53:37 +0000 (16:53 +0000)]
updated dwcaImport test file
Andreas Kohlbecker [Wed, 23 Nov 2011 11:43:33 +0000 (11:43 +0000)]
inverse relations now are showing up, fixing #2609 (Implement Concept Relationships for Dataportal)