Andreas Müller [Wed, 11 Sep 2013 14:31:18 +0000 (14:31 +0000)]
final implementation of MaterialOrMethodEvent, Cloning, PreservationMethod, ... #3360
Andreas Müller [Mon, 9 Sep 2013 14:10:49 +0000 (14:10 +0000)]
add serId
Andreas Müller [Mon, 9 Sep 2013 13:54:21 +0000 (13:54 +0000)]
update script for vocabulary representations #3708 and some bugfixes on vocabularies and code
Andreas Müller [Mon, 9 Sep 2013 13:01:02 +0000 (13:01 +0000)]
minor
Andreas Müller [Mon, 9 Sep 2013 12:59:15 +0000 (12:59 +0000)]
add new derivation events #3714
Andreas Müller [Mon, 9 Sep 2013 10:00:08 +0000 (10:00 +0000)]
minor
Andreas Müller [Sat, 7 Sep 2013 01:47:21 +0000 (01:47 +0000)]
fix mixing abbrevLabel and label in VocabularyCreator
Andreas Müller [Sat, 7 Sep 2013 01:38:17 +0000 (01:38 +0000)]
fix #3550 (duplicated reading of TermVocabulary representations during term loading)
Andreas Müller [Sat, 7 Sep 2013 00:57:58 +0000 (00:57 +0000)]
drop sequence identifiable entity tables in update script #3360
Andreas Müller [Sat, 7 Sep 2013 00:39:04 +0000 (00:39 +0000)]
Change WaterbodyOrCountry name to Country #3700
Andreas Müller [Sat, 7 Sep 2013 00:37:16 +0000 (00:37 +0000)]
Change WaterbodyOrCountry name to Country #3700
Andreas Müller [Fri, 6 Sep 2013 23:16:10 +0000 (23:16 +0000)]
move static waterbody methods to NamedArea
Andreas Müller [Fri, 6 Sep 2013 23:05:11 +0000 (23:05 +0000)]
minor
Andreas Müller [Fri, 6 Sep 2013 23:00:39 +0000 (23:00 +0000)]
update waterbody uuids in class, csv and TermsDataSet
Andreas Müller [Fri, 6 Sep 2013 22:56:47 +0000 (22:56 +0000)]
adapt DTYPE and orderindex for waterbody #3700 and update uuids #3705
Andreas Müller [Fri, 6 Sep 2013 21:39:36 +0000 (21:39 +0000)]
remove measurement unit dummy, replace by meter and second
Andreas Müller [Fri, 6 Sep 2013 21:37:34 +0000 (21:37 +0000)]
move code
Andreas Müller [Fri, 6 Sep 2013 21:33:35 +0000 (21:33 +0000)]
update some vocabulary labels and descriptions
Andreas Müller [Fri, 6 Sep 2013 21:24:15 +0000 (21:24 +0000)]
Change WaterbodyOrCountry representation
Andreas Müller [Fri, 6 Sep 2013 19:58:09 +0000 (19:58 +0000)]
remove dummy terms with update script #3706
Andreas Müller [Fri, 6 Sep 2013 16:25:47 +0000 (16:25 +0000)]
Update script for WaterbodyOrCountry splitting #3700 (no Class name change yet)
Andreas Müller [Fri, 6 Sep 2013 14:19:17 +0000 (14:19 +0000)]
add hierarchical information to DnaMarker vocabularies #3591
Andreas Müller [Fri, 6 Sep 2013 14:17:37 +0000 (14:17 +0000)]
update NomenclaturalCode.csv to use ICNAFP
Andreas Müller [Fri, 6 Sep 2013 14:16:51 +0000 (14:16 +0000)]
allow DefinedTerms to be partOf
Andreas Müller [Fri, 6 Sep 2013 14:14:23 +0000 (14:14 +0000)]
split Waterbody and Country vocabulary and make waterbody an ordinary NamedArea #3700
Andreas Müller [Thu, 5 Sep 2013 22:41:56 +0000 (22:41 +0000)]
Chloroplast DNA Markers and some more Eukaryotes #3591
Andreas Müller [Thu, 5 Sep 2013 21:17:46 +0000 (21:17 +0000)]
bugfix for DOI handling
Andreas Müller [Thu, 5 Sep 2013 21:14:44 +0000 (21:14 +0000)]
bugfix for DOI handling
Andreas Müller [Thu, 5 Sep 2013 15:09:21 +0000 (15:09 +0000)]
implement DOI class and use in Reference #3572
Andreas Müller [Thu, 5 Sep 2013 15:06:16 +0000 (15:06 +0000)]
implement DOI class and use in Reference #3572
Andreas Müller [Wed, 4 Sep 2013 15:53:46 +0000 (15:53 +0000)]
remove TODO
Andreas Müller [Wed, 4 Sep 2013 15:53:07 +0000 (15:53 +0000)]
Allow access to hibernate dialect via DatabaseTypeEnum, use this for foreign key handling in TableCreator and ColumnAdder/Changer
Andreas Müller [Wed, 4 Sep 2013 15:10:24 +0000 (15:10 +0000)]
move specimen images in update script and use class changer to change SpecimenOrObservation classes
Andreas Müller [Tue, 3 Sep 2013 16:13:04 +0000 (16:13 +0000)]
evaluate data with existing publish marker #1780
Andreas Müller [Tue, 3 Sep 2013 14:02:45 +0000 (14:02 +0000)]
bugfix for correct time for term and vocabulary creation
Andreas Müller [Tue, 3 Sep 2013 13:59:07 +0000 (13:59 +0000)]
bugfix for correct time for term and vocabulary creation
Andreas Müller [Tue, 3 Sep 2013 13:47:06 +0000 (13:47 +0000)]
use correct time for term and vocabulary creation
Andreas Müller [Tue, 3 Sep 2013 13:26:44 +0000 (13:26 +0000)]
rename getRankByAbbrev methods to getRankByIdInVoc #3479
Andreas Müller [Tue, 3 Sep 2013 13:24:56 +0000 (13:24 +0000)]
conservative language handling for nomenclatural status type #3545
Andreas Müller [Tue, 3 Sep 2013 13:21:39 +0000 (13:21 +0000)]
minor
Andreas Müller [Tue, 3 Sep 2013 13:18:55 +0000 (13:18 +0000)]
use latin for new combination #3545
Andreas Müller [Tue, 3 Sep 2013 13:17:47 +0000 (13:17 +0000)]
add hibernate_sequences handling to table changing updaters
Andreas Müller [Tue, 3 Sep 2013 12:44:17 +0000 (12:44 +0000)]
allow failing hibernate_sequence update
Andreas Müller [Tue, 3 Sep 2013 11:32:46 +0000 (11:32 +0000)]
fix duplicate idInVocabulary in term loading and schema updater #3479
Andreas Müller [Tue, 3 Sep 2013 10:22:51 +0000 (10:22 +0000)]
bugfix for treeindex updater
Andreas Müller [Mon, 2 Sep 2013 16:02:30 +0000 (16:02 +0000)]
Bugfix for rankClass update in term updater
Andreas Müller [Fri, 30 Aug 2013 16:08:33 +0000 (16:08 +0000)]
minor javadoc
Andreas Müller [Fri, 30 Aug 2013 15:51:46 +0000 (15:51 +0000)]
persist Sequence direction via enum key #3686
Andreas Müller [Fri, 30 Aug 2013 15:49:49 +0000 (15:49 +0000)]
fix termupdating for 31_33
Andreas Müller [Fri, 30 Aug 2013 15:48:33 +0000 (15:48 +0000)]
fix termupdating for 31_33
Andreas Müller [Fri, 30 Aug 2013 15:47:48 +0000 (15:47 +0000)]
fix update hibernate_sequences
Andreas Müller [Fri, 30 Aug 2013 15:42:45 +0000 (15:42 +0000)]
fix bugs in termupdater
Andreas Müller [Fri, 30 Aug 2013 09:17:39 +0000 (09:17 +0000)]
adding FactoryMethods and Constructor to DNA classes and uuid/key for SequenceDirection
Andreas Müller [Fri, 30 Aug 2013 09:08:26 +0000 (09:08 +0000)]
minor
Andreas Müller [Fri, 30 Aug 2013 09:05:08 +0000 (09:05 +0000)]
Change CdmMetaData term version
Andreas Müller [Fri, 30 Aug 2013 09:02:00 +0000 (09:02 +0000)]
Make InnoDB the default MySQL database system for CDM #3371
Andreas Müller [Fri, 30 Aug 2013 08:59:16 +0000 (08:59 +0000)]
include more auditing in schema update and refactor to better allow transaction support for schema updates
Andreas Müller [Fri, 30 Aug 2013 08:57:18 +0000 (08:57 +0000)]
some javadoc and factory methods
Andreas Müller [Tue, 27 Aug 2013 22:49:08 +0000 (22:49 +0000)]
minor changes, remove private methods
Andreas Müller [Tue, 27 Aug 2013 20:16:12 +0000 (20:16 +0000)]
change table name Rights->RightsInfo #2945
Andreas Müller [Tue, 27 Aug 2013 18:44:25 +0000 (18:44 +0000)]
update Collection class
Andreas Müller [Tue, 27 Aug 2013 18:21:32 +0000 (18:21 +0000)]
fix all compilation errors for app-import 3.3
Andreas Müller [Tue, 27 Aug 2013 18:16:35 +0000 (18:16 +0000)]
fix all compilation errors for app-import 3.3
Andreas Müller [Tue, 27 Aug 2013 17:22:54 +0000 (17:22 +0000)]
further compilation errors for app-import 3.3 (remaining only AlgaTerra DerivedUnitTypes)
Andreas Müller [Tue, 27 Aug 2013 15:52:59 +0000 (15:52 +0000)]
fix compilation errors for eflora after upgrade to 3.3
Andreas Müller [Tue, 27 Aug 2013 14:43:02 +0000 (14:43 +0000)]
merge trunk into cdm3.3 branch
Andreas Müller [Tue, 27 Aug 2013 14:07:21 +0000 (14:07 +0000)]
update parent pom version 3.2.3 -> 3.2.4
Andreas Müller [Tue, 27 Aug 2013 14:06:42 +0000 (14:06 +0000)]
update pom vesion 3.2.3 -> 3.2.4
Andreas Müller [Tue, 27 Aug 2013 13:59:23 +0000 (13:59 +0000)]
minor
Andreas Müller [Tue, 27 Aug 2013 13:53:18 +0000 (13:53 +0000)]
remove descriptionSeparated from FeatureTree #3678
Andreas Müller [Tue, 27 Aug 2013 13:09:51 +0000 (13:09 +0000)]
serialUUID for DerivedUnit
Andreas Müller [Tue, 27 Aug 2013 10:47:59 +0000 (10:47 +0000)]
javadoc
Andreas Müller [Tue, 27 Aug 2013 10:39:44 +0000 (10:39 +0000)]
add kindOfUnit vocabularies to CDM and tests (update script still missing) #3568
Andreas Müller [Tue, 27 Aug 2013 08:39:55 +0000 (08:39 +0000)]
add kindOfUnit termType #3568
Andreas Müller [Tue, 27 Aug 2013 08:39:07 +0000 (08:39 +0000)]
replace specification by specialization
Andreas Müller [Tue, 27 Aug 2013 08:37:00 +0000 (08:37 +0000)]
remove imports
Andreas Müller [Tue, 27 Aug 2013 08:36:08 +0000 (08:36 +0000)]
remove commented elevation error
Andreas Müller [Tue, 27 Aug 2013 08:35:12 +0000 (08:35 +0000)]
remove commented annotations
Andreas Müller [Mon, 26 Aug 2013 23:08:52 +0000 (23:08 +0000)]
remove getCitation and IReferencedEntity from TaxonNameBase
Andreas Müller [Mon, 26 Aug 2013 22:14:53 +0000 (22:14 +0000)]
some documentation
Andreas Müller [Mon, 26 Aug 2013 21:50:32 +0000 (21:50 +0000)]
fix failing tests for linkbackUri (#3345 and #3374)
Andreas Müller [Mon, 26 Aug 2013 20:20:05 +0000 (20:20 +0000)]
final adaptations for Annotation.linkbackUri #3374 and #3345
Andreas Müller [Mon, 26 Aug 2013 18:55:39 +0000 (18:55 +0000)]
minor
Andreas Müller [Mon, 26 Aug 2013 18:54:18 +0000 (18:54 +0000)]
base implementation for integration of original spelling in name cache strategy #2874
Andreas Müller [Mon, 26 Aug 2013 18:28:24 +0000 (18:28 +0000)]
No idea why the data was updated automatically, but commit this as all tests run, we may revert this change if necessary
Andreas Müller [Mon, 26 Aug 2013 17:22:06 +0000 (17:22 +0000)]
fix failing test lucene indexing test in TaxonNodeServiceImplTest
Andreas Müller [Mon, 26 Aug 2013 16:51:05 +0000 (16:51 +0000)]
minor cleanup
Andreas Müller [Mon, 26 Aug 2013 16:44:50 +0000 (16:44 +0000)]
bugfix for failing TaxonNodeService test
Andreas Müller [Mon, 26 Aug 2013 16:40:51 +0000 (16:40 +0000)]
minor
Andreas Müller [Mon, 26 Aug 2013 16:30:13 +0000 (16:30 +0000)]
bugfix for failing TaxonNodeService test
Andreas Müller [Fri, 23 Aug 2013 21:24:42 +0000 (21:24 +0000)]
change loglevel of TransmissionEngineDistribution
Andreas Müller [Fri, 23 Aug 2013 20:09:43 +0000 (20:09 +0000)]
adapt test data for failing test
Andreas Müller [Fri, 23 Aug 2013 19:48:53 +0000 (19:48 +0000)]
bugfix for preserved specimen
Andreas Müller [Fri, 23 Aug 2013 16:00:01 +0000 (16:00 +0000)]
Schema update for referenceType persistence #2615
Andreas Müller [Fri, 23 Aug 2013 15:59:04 +0000 (15:59 +0000)]
log text for enum exceptions
Andreas Müller [Fri, 23 Aug 2013 15:58:24 +0000 (15:58 +0000)]
update SpecimenOrObservationTypes
Andreas Müller [Fri, 23 Aug 2013 13:42:21 +0000 (13:42 +0000)]
update script for recordBasis
Patric Plitzner [Fri, 23 Aug 2013 12:10:11 +0000 (12:10 +0000)]
- changed "not null" property for "kindOfUni" to false
Patric Plitzner [Fri, 23 Aug 2013 09:52:04 +0000 (09:52 +0000)]
- fixed case of table name "Representation"
Andreas Müller [Fri, 23 Aug 2013 09:11:36 +0000 (09:11 +0000)]
some fixes for modell change branche