cdmlib.git
9 months agoref #8591: fix comparison in debugResult
Katja [Tue, 28 Nov 2023 12:27:24 +0000 (13:27 +0100)]
ref #8591: fix comparison in debugResult

9 months agoref #10397: fix setting preferred flag
Katja [Tue, 28 Nov 2023 10:55:55 +0000 (11:55 +0100)]
ref #10397: fix setting preferred flag

9 months agoref #10397: add method to get determination for taxon
Katja Luther [Tue, 28 Nov 2023 10:31:51 +0000 (11:31 +0100)]
ref #10397: add method to get determination for taxon

9 months agoref #10397: if wanted create new determination when moving
Katja Luther [Tue, 28 Nov 2023 10:22:14 +0000 (11:22 +0100)]
ref #10397: if wanted create new determination when moving

9 months agocleanup
Andreas Müller [Mon, 27 Nov 2023 14:30:33 +0000 (15:30 +0100)]
cleanup

9 months agoref #10432 add hyphen in initials handling to BibliographicAuthorParser
Andreas Müller [Mon, 27 Nov 2023 14:30:20 +0000 (15:30 +0100)]
ref #10432 add hyphen in initials handling to BibliographicAuthorParser

9 months agoref #10178: Ex Author Comparison and Authorship with "and" in between
Belen Escobari [Mon, 27 Nov 2023 13:24:40 +0000 (14:24 +0100)]
ref #10178: Ex Author Comparison and Authorship with "and" in between

9 months agoref #10432 refactor getIdentifierType in IdentifierImport
Andreas Müller [Mon, 27 Nov 2023 11:54:15 +0000 (12:54 +0100)]
ref #10432 refactor getIdentifierType in IdentifierImport

9 months agoref #10432, #7309 implement truncating for collectorTitleCache
Andreas Müller [Mon, 27 Nov 2023 11:52:07 +0000 (12:52 +0100)]
ref #10432, #7309 implement truncating for collectorTitleCache

9 months agoref #10433 add index fungorum name identifier type
Andreas Müller [Mon, 27 Nov 2023 11:49:52 +0000 (12:49 +0100)]
ref #10433 add index fungorum name identifier type

9 months agocleanup
Andreas Müller [Mon, 27 Nov 2023 11:45:28 +0000 (12:45 +0100)]
cleanup

9 months agoref #10718 add commented test which handles 'and' in author team
Andreas Müller [Fri, 24 Nov 2023 15:55:00 +0000 (16:55 +0100)]
ref #10718 add commented test which handles 'and' in author team

9 months agoref #10718 reenable commented test by replacing 'and' by '&'
Andreas Müller [Fri, 24 Nov 2023 15:53:06 +0000 (16:53 +0100)]
ref #10718 reenable commented test by replacing 'and' by '&'

9 months agoref #10178: Author Comparison. Test excluded
Belen Escobari [Fri, 24 Nov 2023 09:36:08 +0000 (10:36 +0100)]
ref #10178: Author Comparison. Test excluded

9 months agoref #10178: Author Comparison
Belen Escobari [Thu, 23 Nov 2023 12:09:21 +0000 (13:09 +0100)]
ref #10178: Author Comparison

9 months agoadd getDefaultDescription to Taxon
Katja Luther [Fri, 10 Nov 2023 10:02:02 +0000 (11:02 +0100)]
add getDefaultDescription to Taxon

10 months agoremove CdmUtils.isEmpty and some cleanup
Andreas Müller [Tue, 7 Nov 2023 11:18:12 +0000 (12:18 +0100)]
remove CdmUtils.isEmpty and some cleanup

10 months agoUpdating develop poms back to pre merge state
jenkins [Fri, 27 Oct 2023 17:25:01 +0000 (19:25 +0200)]
Updating develop poms back to pre merge state

10 months agoMerge branch 'master' into develop
jenkins [Fri, 27 Oct 2023 17:25:00 +0000 (19:25 +0200)]
Merge branch 'master' into develop

10 months agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Fri, 27 Oct 2023 17:24:58 +0000 (19:24 +0200)]
updating develop poms to master versions to avoid merge conflicts

10 months agoMerge branch 'release/5.41.0' 5.41.0
jenkins [Fri, 27 Oct 2023 17:24:52 +0000 (19:24 +0200)]
Merge branch 'release/5.41.0'

10 months agoupdating poms for branch'release/5.41.0' with non-snapshot versions
jenkins [Fri, 27 Oct 2023 17:11:51 +0000 (19:11 +0200)]
updating poms for branch'release/5.41.0' with non-snapshot versions

10 months agoupdating poms for 5.42.0-SNAPSHOT development
jenkins [Fri, 27 Oct 2023 16:09:27 +0000 (18:09 +0200)]
updating poms for 5.42.0-SNAPSHOT development

10 months agoref #5973: param to define whether moved descEl goes to default descr origin/release/5.41.0
Katja Luther [Fri, 27 Oct 2023 13:38:21 +0000 (15:38 +0200)]
ref #5973: param to define whether moved descEl goes to default descr

10 months agoref #5973: add hasDefaultDes to Taxon, handle default for moved desElem
Katja Luther [Fri, 27 Oct 2023 12:19:03 +0000 (14:19 +0200)]
ref #5973: add hasDefaultDes to Taxon, handle default for moved desElem

10 months agoref #10271 some improvements to COL-DP Export (fix export type test in CDM light)
Andreas Müller [Thu, 26 Oct 2023 19:51:39 +0000 (21:51 +0200)]
ref #10271 some improvements to COL-DP Export (fix export type test in CDM light)

10 months agocleanup
Andreas Müller [Thu, 26 Oct 2023 19:30:06 +0000 (21:30 +0200)]
cleanup

10 months agoref #10271 some improvements to COL-DP Export
Andreas Müller [Thu, 26 Oct 2023 19:29:37 +0000 (21:29 +0200)]
ref #10271 some improvements to COL-DP Export

10 months agoref #10398: code cleaning
Katja Luther [Thu, 26 Oct 2023 13:49:05 +0000 (15:49 +0200)]
ref #10398: code cleaning

10 months agoref #5973: handle default descriptions when moving
Katja Luther [Wed, 25 Oct 2023 12:49:50 +0000 (14:49 +0200)]
ref #5973: handle default descriptions when moving

10 months agoref #10393: code cleaning
Katja Luther [Tue, 24 Oct 2023 13:24:17 +0000 (15:24 +0200)]
ref #10393: code cleaning

10 months agominor
Katja Luther [Mon, 23 Oct 2023 13:09:28 +0000 (15:09 +0200)]
minor

10 months agoref #10411: add method to get node for term
Katja Luther [Mon, 23 Oct 2023 13:09:28 +0000 (15:09 +0200)]
ref #10411: add method to get node for term

10 months agoadd comparator for determinations
Katja Luther [Mon, 23 Oct 2023 12:46:57 +0000 (14:46 +0200)]
add comparator for determinations

10 months agofix that term node d&d
Katja Luther [Mon, 23 Oct 2023 11:12:01 +0000 (13:12 +0200)]
fix that term node d&d

10 months agoref #10419 adapt DerivedUnitFacadeFieldUnitCacheStrategy collector formatting to...
Andreas Müller [Sat, 21 Oct 2023 10:32:48 +0000 (12:32 +0200)]
ref #10419 adapt DerivedUnitFacadeFieldUnitCacheStrategy collector formatting to FieldUnitDefaultCacheStrategy

10 months agocleanup
Andreas Müller [Fri, 20 Oct 2023 12:58:42 +0000 (14:58 +0200)]
cleanup

10 months agofix #10420 order exact values in QuantitativeDataFormatter
Andreas Müller [Fri, 20 Oct 2023 12:58:29 +0000 (14:58 +0200)]
fix #10420 order exact values in QuantitativeDataFormatter

10 months agofix #10419 fix collector title handling for protected titleCache collectors
Andreas Müller [Fri, 20 Oct 2023 10:47:59 +0000 (12:47 +0200)]
fix #10419 fix collector title handling for protected titleCache collectors

10 months agocleanup
Andreas Müller [Fri, 20 Oct 2023 09:19:11 +0000 (11:19 +0200)]
cleanup

10 months agocode cleaning and add test for nomenclatural code
Katja Luther [Fri, 20 Oct 2023 08:34:17 +0000 (10:34 +0200)]
code cleaning and add test for nomenclatural code

10 months agocleanup
Andreas Müller [Fri, 20 Oct 2023 08:02:04 +0000 (10:02 +0200)]
cleanup

10 months agominor
Andreas Müller [Thu, 19 Oct 2023 13:49:19 +0000 (15:49 +0200)]
minor

10 months agoref #10393 code cleanup
Andreas Müller [Thu, 19 Oct 2023 13:45:35 +0000 (15:45 +0200)]
ref #10393 code cleanup

10 months agocleanup
Andreas Müller [Thu, 19 Oct 2023 13:32:58 +0000 (15:32 +0200)]
cleanup

10 months agocleanup indentation
Andreas Müller [Thu, 19 Oct 2023 13:22:15 +0000 (15:22 +0200)]
cleanup indentation

10 months agocleanup
Andreas Müller [Thu, 19 Oct 2023 13:18:51 +0000 (15:18 +0200)]
cleanup

10 months agoref #10394: order the quantitative data
Katja [Thu, 19 Oct 2023 13:15:21 +0000 (15:15 +0200)]
ref #10394: order the quantitative data

10 months agoref #10394 cleanup code after fix (cont.)
Andreas Müller [Thu, 19 Oct 2023 12:58:42 +0000 (14:58 +0200)]
ref #10394 cleanup code after fix (cont.)

10 months agocleanup
Andreas Müller [Thu, 19 Oct 2023 12:13:41 +0000 (14:13 +0200)]
cleanup

10 months agoref #10394 cleanup code after fix
Andreas Müller [Thu, 19 Oct 2023 12:13:26 +0000 (14:13 +0200)]
ref #10394 cleanup code after fix

10 months agoref #10394 remove null check for HibernateProxyHelper.deproxy
Andreas Müller [Thu, 19 Oct 2023 11:11:35 +0000 (13:11 +0200)]
ref #10394 remove null check for HibernateProxyHelper.deproxy

10 months agoref #10385, ref #10387 add transliteration to CommonNameDto
Andreas Müller [Wed, 18 Oct 2023 13:17:18 +0000 (15:17 +0200)]
ref #10385, ref #10387 add transliteration to CommonNameDto

10 months agoref #10394: fix QuantitativeDataDescriptionBuilder
Katja [Wed, 18 Oct 2023 09:48:02 +0000 (11:48 +0200)]
ref #10394: fix QuantitativeDataDescriptionBuilder

10 months agoref #10410: adapt test
Katja Luther [Tue, 17 Oct 2023 16:34:44 +0000 (18:34 +0200)]
ref #10410: adapt test

10 months agoref #10410: adapt dto creation
Katja Luther [Tue, 17 Oct 2023 13:01:16 +0000 (15:01 +0200)]
ref #10410: adapt dto creation

10 months agoref #10397: check also for typespecimen
Katja [Tue, 17 Oct 2023 10:25:48 +0000 (12:25 +0200)]
ref #10397: check also  for typespecimen

10 months agoref #10397: add check for IndividualsAssociation
Katja Luther [Mon, 16 Oct 2023 10:59:54 +0000 (12:59 +0200)]
ref #10397: add check for IndividualsAssociation

10 months agoref #10397: revert continue
Katja Luther [Fri, 13 Oct 2023 05:52:50 +0000 (07:52 +0200)]
ref #10397: revert continue

10 months agoref #10397: revert last changes - continue
Katja Luther [Thu, 12 Oct 2023 10:47:02 +0000 (12:47 +0200)]
ref #10397: revert last changes - continue

10 months agoref #2975 for label for not interpretable
Andreas Müller [Thu, 12 Oct 2023 10:24:27 +0000 (12:24 +0200)]
ref #2975 for label for not interpretable

10 months agoref #10397: revert last changes
Katja Luther [Thu, 12 Oct 2023 08:39:32 +0000 (10:39 +0200)]
ref #10397: revert last changes

10 months agoref #10398: adapt test to new configurator attribute
Katja Luther [Thu, 12 Oct 2023 06:48:07 +0000 (08:48 +0200)]
ref #10398: adapt test to new configurator attribute

10 months agoref #10398: importing specimen/taxon rel depending on configurator
Katja Luther [Wed, 11 Oct 2023 12:37:52 +0000 (14:37 +0200)]
ref #10398: importing specimen/taxon rel depending on configurator

10 months agoref #10398: smaller changes in SpecimenImportConfigurator
Katja Luther [Wed, 11 Oct 2023 11:11:07 +0000 (13:11 +0200)]
ref #10398: smaller changes in SpecimenImportConfigurator

10 months agoref #10397: check for taxon associations
Katja Luther [Wed, 11 Oct 2023 07:12:05 +0000 (09:12 +0200)]
ref #10397: check for taxon associations

11 months agoref #5973: add new preference predicate for description handling in
Katja Luther [Tue, 10 Oct 2023 13:08:49 +0000 (15:08 +0200)]
ref #5973: add new preference predicate for description handling in
distr editor

11 months agofix potential NPE in DistributionAggregation
Andreas Müller [Tue, 10 Oct 2023 09:40:22 +0000 (11:40 +0200)]
fix potential NPE in DistributionAggregation

11 months agocleanup
Andreas Müller [Mon, 9 Oct 2023 15:05:12 +0000 (17:05 +0200)]
cleanup

11 months agoref #7922: collect all descriptions containing distributions except
Katja Luther [Mon, 9 Oct 2023 09:24:36 +0000 (11:24 +0200)]
ref #7922: collect all descriptions containing distributions except
computed ones

11 months agoref #5973: use default description for distribution editor
Katja Luther [Fri, 6 Oct 2023 08:37:07 +0000 (10:37 +0200)]
ref #5973: use default description for distribution editor

11 months agoref #10410: ignore computed descriptions for distribution editor
Katja Luther [Thu, 5 Oct 2023 07:39:25 +0000 (09:39 +0200)]
ref #10410: ignore computed descriptions for distribution editor

11 months agofix error in language handling in termDto
Katja Luther [Wed, 4 Oct 2023 12:16:22 +0000 (14:16 +0200)]
fix error in language handling in termDto

11 months agoref #10364: add language parameter for rowWrapper creation
Katja Luther [Wed, 4 Oct 2023 12:14:46 +0000 (14:14 +0200)]
ref #10364: add language parameter for rowWrapper creation

11 months agoref #10178 add configurator and matching result to name matching
Andreas Müller [Wed, 4 Oct 2023 10:36:14 +0000 (12:36 +0200)]
ref #10178 add configurator and matching result to name matching

11 months agocleanup
Andreas Müller [Wed, 4 Oct 2023 10:20:54 +0000 (12:20 +0200)]
cleanup

11 months agoadapt to moved dtos
Katja Luther [Wed, 4 Oct 2023 07:42:37 +0000 (09:42 +0200)]
adapt to moved dtos

11 months agoref #10364: adapt dtos and dto handling to using modifiers
Katja Luther [Wed, 4 Oct 2023 07:26:25 +0000 (09:26 +0200)]
ref #10364: adapt dtos and dto handling to using modifiers

11 months agoclean up
Belen Escobari [Tue, 3 Oct 2023 11:58:50 +0000 (13:58 +0200)]
clean up

11 months agoadd distributionStatusColors computation as commented code
Andreas Müller [Fri, 29 Sep 2023 18:56:54 +0000 (20:56 +0200)]
add distributionStatusColors computation as commented code

11 months agocleanup
Andreas Müller [Fri, 29 Sep 2023 18:45:49 +0000 (20:45 +0200)]
cleanup

11 months agocleanup
Andreas Müller [Thu, 28 Sep 2023 19:18:28 +0000 (21:18 +0200)]
cleanup

11 months agotruncate nameCache if necessary
Andreas Müller [Thu, 28 Sep 2023 16:38:48 +0000 (18:38 +0200)]
truncate nameCache if necessary

11 months agocleanup
Andreas Müller [Thu, 28 Sep 2023 10:46:49 +0000 (12:46 +0200)]
cleanup

11 months agoref #9771 fix recursive graph update
Andreas Müller [Mon, 25 Sep 2023 17:40:56 +0000 (19:40 +0200)]
ref #9771 fix recursive graph update

11 months agocleanup
Andreas Müller [Mon, 25 Sep 2023 17:39:13 +0000 (19:39 +0200)]
cleanup

11 months agocleanup
Andreas Müller [Fri, 22 Sep 2023 13:54:28 +0000 (15:54 +0200)]
cleanup

11 months agoref #9771 try to fix path issue on linux
Andreas Müller [Fri, 22 Sep 2023 13:38:45 +0000 (15:38 +0200)]
ref #9771 try to fix path issue on linux

11 months agocleanup
Andreas Müller [Fri, 22 Sep 2023 13:13:45 +0000 (15:13 +0200)]
cleanup

11 months agoref #9771 use system tmp directory for other repository and split graph test
Andreas Müller [Fri, 22 Sep 2023 13:12:29 +0000 (15:12 +0200)]
ref #9771 use system tmp directory for other repository and split graph test

11 months agoref #10178 replace DoubleResult by SingleNameMatchingResult
Andreas Müller [Fri, 22 Sep 2023 10:06:07 +0000 (12:06 +0200)]
ref #10178 replace DoubleResult by SingleNameMatchingResult

11 months agoref #10178 some comments and code cleaning for name matching
Andreas Müller [Fri, 22 Sep 2023 09:41:25 +0000 (11:41 +0200)]
ref #10178 some comments and code cleaning for name matching

11 months agoclean up line endings etc.
Andreas Müller [Fri, 22 Sep 2023 09:39:25 +0000 (11:39 +0200)]
clean up line endings etc.

11 months agoref #9771 fix configurator setting for adding terms in Cdm2CdmVocabularyImportTest
Andreas Müller [Thu, 21 Sep 2023 20:10:09 +0000 (22:10 +0200)]
ref #9771 fix configurator setting for adding terms in Cdm2CdmVocabularyImportTest

11 months agoref #9771 fix configurator setting in Cdm2CdmVocabularyImportTest
Andreas Müller [Thu, 21 Sep 2023 19:55:31 +0000 (21:55 +0200)]
ref #9771 fix configurator setting in Cdm2CdmVocabularyImportTest

11 months agoref #9771 , ref #10133 implement add missing terms for term trees
Andreas Müller [Thu, 21 Sep 2023 13:35:32 +0000 (15:35 +0200)]
ref #9771 , ref #10133 implement add missing terms for term trees

11 months agoref #9771 , ref #10133 allow configuation for addMissingTerms
Andreas Müller [Thu, 21 Sep 2023 13:34:17 +0000 (15:34 +0200)]
ref #9771 , ref #10133 allow configuation for addMissingTerms

11 months agoref #9771 , ref #10133 allow importing graphs with partial vocabularies (javadoc)
Andreas Müller [Thu, 21 Sep 2023 13:33:10 +0000 (15:33 +0200)]
ref #9771 , ref #10133 allow importing graphs with partial vocabularies (javadoc)

11 months agocleanup
Andreas Müller [Thu, 21 Sep 2023 13:22:41 +0000 (15:22 +0200)]
cleanup

11 months agoref #10401 adapt NomenclaturalStatusTypeIczn terms in csv
Andreas Müller [Thu, 21 Sep 2023 13:15:06 +0000 (15:15 +0200)]
ref #10401 adapt NomenclaturalStatusTypeIczn terms in csv