cdmlib.git
13 years agotest output to file
Andreas Müller [Wed, 11 May 2011 16:24:33 +0000 (16:24 +0000)]
test output to file

13 years agoapos replaced
Andreas Müller [Wed, 11 May 2011 16:21:13 +0000 (16:21 +0000)]
apos replaced

13 years agoadd printDataSet for bugfixing
Andreas Müller [Wed, 11 May 2011 15:35:14 +0000 (15:35 +0000)]
add printDataSet for bugfixing

13 years agounignore specimen import test
Andreas Müller [Wed, 11 May 2011 15:20:33 +0000 (15:20 +0000)]
unignore specimen import test

13 years agoInclude FieldObservation in Specimen Facade
Andreas Müller [Wed, 11 May 2011 15:18:37 +0000 (15:18 +0000)]
Include FieldObservation in Specimen Facade

13 years agoadd cacheStrategy to ignored property changes
Andreas Müller [Wed, 11 May 2011 15:16:35 +0000 (15:16 +0000)]
add cacheStrategy to ignored property changes

13 years agoset test to ignore
Andreas Müller [Wed, 11 May 2011 13:56:54 +0000 (13:56 +0000)]
set test to ignore

13 years agoadded FieldObservationCacheStrategy (not functional yet)
Andreas Müller [Wed, 11 May 2011 11:47:37 +0000 (11:47 +0000)]
added FieldObservationCacheStrategy (not functional yet)

13 years agominor
Andreas Müller [Wed, 11 May 2011 11:47:13 +0000 (11:47 +0000)]
minor

13 years agofirst part of implementation for CDM Specimen import
Andreas Müller [Wed, 11 May 2011 11:20:08 +0000 (11:20 +0000)]
first part of implementation for CDM Specimen import

13 years agomake countByTitle public and delete param propertyPath
Katja Luther [Wed, 11 May 2011 11:09:18 +0000 (11:09 +0000)]
make countByTitle public and delete param propertyPath

13 years agobugfix for ExcelUtils excel line reader
Andreas Müller [Wed, 11 May 2011 10:41:45 +0000 (10:41 +0000)]
bugfix for ExcelUtils excel line reader

13 years agofurther error handling for Point parsing
Andreas Müller [Wed, 11 May 2011 10:40:14 +0000 (10:40 +0000)]
further error handling for Point parsing

13 years agobidirectional relationship between SpecimenTypeDesignation and DerivedUnitBase
Katja Luther [Wed, 11 May 2011 10:39:46 +0000 (10:39 +0000)]
bidirectional relationship between SpecimenTypeDesignation and DerivedUnitBase

13 years agocountByTitle() method for IIdentifiableService
Katja Luther [Wed, 11 May 2011 09:06:30 +0000 (09:06 +0000)]
countByTitle() method for IIdentifiableService

13 years agoinclude recognition of double values in Point.byParsing methods
Andreas Müller [Tue, 10 May 2011 23:11:20 +0000 (23:11 +0000)]
include recognition of double values in Point.byParsing methods

13 years agoRenaming GroupService to GroupServiceImpl for the sake of API consistency. Also added...
n.hoffmann [Tue, 10 May 2011 16:33:46 +0000 (16:33 +0000)]
Renaming GroupService to GroupServiceImpl for the sake of API consistency. Also added some much needed NPE checks.

13 years agorename excel specimen example
Andreas Müller [Tue, 10 May 2011 15:01:02 +0000 (15:01 +0000)]
rename excel specimen example

13 years agobugfix for compilation error in BerlinModelTransformer
Andreas Müller [Tue, 10 May 2011 14:50:00 +0000 (14:50 +0000)]
bugfix for compilation error in BerlinModelTransformer

13 years agoDevide preferred and other determinations in derived unit facade (#2375)
Andreas Müller [Tue, 10 May 2011 14:27:04 +0000 (14:27 +0000)]
Devide preferred and other determinations in derived unit facade (#2375)

13 years agoMake "formerly" presenceTerms absenceTerms (#2373) and added Gazetteer to !ReferenceS...
Andreas Müller [Tue, 10 May 2011 13:46:01 +0000 (13:46 +0000)]
Make "formerly" presenceTerms absenceTerms (#2373) and added Gazetteer to !ReferenceSystems (#2374)

13 years agoremove collectors number from facade.addDuplicate
Andreas Müller [Tue, 10 May 2011 12:51:02 +0000 (12:51 +0000)]
remove collectors number from facade.addDuplicate

13 years agoadded EnumType to the noDoTypes
Andreas Müller [Tue, 10 May 2011 12:49:51 +0000 (12:49 +0000)]
added EnumType to the noDoTypes

13 years agoundo the last changes
Katja Luther [Tue, 10 May 2011 10:27:10 +0000 (10:27 +0000)]
undo the last changes

13 years agobidirectional relation between SpecimenTypeDesignation and DerivedUnitBase
Katja Luther [Tue, 10 May 2011 09:54:17 +0000 (09:54 +0000)]
bidirectional relation between SpecimenTypeDesignation and DerivedUnitBase

13 years agoall nom. status should parse correctly now (#2355)
Andreas Müller [Mon, 9 May 2011 22:35:26 +0000 (22:35 +0000)]
all nom. status should parse correctly now (#2355)

13 years agoerror in test for Sequence deleted
Katja Luther [Mon, 9 May 2011 07:30:17 +0000 (07:30 +0000)]
error in test for Sequence deleted

13 years agofixing release svn tagBase
Andreas Kohlbecker [Fri, 6 May 2011 15:27:47 +0000 (15:27 +0000)]
fixing release svn tagBase

13 years agominor
Andreas Müller [Fri, 6 May 2011 11:23:50 +0000 (11:23 +0000)]
minor

13 years agotypo
Andreas Kohlbecker [Thu, 5 May 2011 14:39:48 +0000 (14:39 +0000)]
typo

13 years agobugfix for facadecache test
Andreas Müller [Wed, 4 May 2011 22:07:29 +0000 (22:07 +0000)]
bugfix for facadecache test

13 years agoimplementing decimals for seconds in Sexagesimal Points #2267
Andreas Müller [Wed, 4 May 2011 17:27:57 +0000 (17:27 +0000)]
implementing decimals for seconds in Sexagesimal Points #2267

13 years agomake collector number deprecated in DerivedUnitBase and remove from specimen facade...
Andreas Müller [Wed, 4 May 2011 14:59:10 +0000 (14:59 +0000)]
make collector number deprecated in DerivedUnitBase and remove from specimen facade and ABCD import and REST services(#2362)

13 years agoPlease see comment:3:ticket:2267
n.hoffmann [Wed, 4 May 2011 14:58:17 +0000 (14:58 +0000)]
Please see comment:3:ticket:2267

13 years agoRefactored IPNIService so that it uses UriUtils
n.hoffmann [Wed, 4 May 2011 11:53:35 +0000 (11:53 +0000)]
Refactored IPNIService so that it uses UriUtils

13 years agomade termsourceuri a real URI (#2313)
Andreas Müller [Tue, 3 May 2011 23:19:44 +0000 (23:19 +0000)]
made termsourceuri a real URI  (#2313)

13 years agomapping to GBIF complete (still need code cleaning)
Andreas Müller [Tue, 3 May 2011 15:31:52 +0000 (15:31 +0000)]
mapping to GBIF complete (still need code cleaning)

13 years agobugfix
Andreas Müller [Tue, 3 May 2011 12:01:15 +0000 (12:01 +0000)]
bugfix

13 years agoterm mapping (2)
Andreas Müller [Tue, 3 May 2011 11:48:16 +0000 (11:48 +0000)]
term mapping (2)

13 years agoterm mapping (2)
Andreas Müller [Tue, 3 May 2011 11:47:56 +0000 (11:47 +0000)]
term mapping (2)

13 years agominor
Andreas Müller [Tue, 3 May 2011 11:47:08 +0000 (11:47 +0000)]
minor

13 years agoadded cloneable interface
Andreas Müller [Tue, 3 May 2011 11:43:36 +0000 (11:43 +0000)]
added cloneable interface

13 years agoExample of a properties file that holds human readable strings for import/export...
n.hoffmann [Mon, 2 May 2011 16:11:59 +0000 (16:11 +0000)]
Example of a properties file that holds human readable strings for import/export configurators

13 years agoExample of a properties file that holds human readable strings for import/export...
n.hoffmann [Mon, 2 May 2011 15:46:09 +0000 (15:46 +0000)]
Example of a properties file that holds human readable strings for import/export configurators

13 years agoChanged destination to type File in NewInstance and constructor methods
n.hoffmann [Mon, 2 May 2011 15:09:22 +0000 (15:09 +0000)]
Changed destination to type File in NewInstance and constructor methods

13 years agominor
Andreas Müller [Mon, 2 May 2011 14:00:53 +0000 (14:00 +0000)]
minor

13 years agominor
Andreas Müller [Mon, 2 May 2011 13:53:35 +0000 (13:53 +0000)]
minor

13 years agoremove doZip
Andreas Müller [Mon, 2 May 2011 13:52:53 +0000 (13:52 +0000)]
remove doZip

13 years agozip creation for dwca
Andreas Müller [Mon, 2 May 2011 12:49:42 +0000 (12:49 +0000)]
zip creation for dwca

13 years agodelete clone method because there is no use case for it
Katja Luther [Mon, 2 May 2011 12:24:24 +0000 (12:24 +0000)]
delete clone method because there is no use case for it

13 years agotests for clone()
Katja Luther [Mon, 2 May 2011 11:22:16 +0000 (11:22 +0000)]
tests for clone()

13 years agoTests for molecular
Katja Luther [Mon, 2 May 2011 11:20:15 +0000 (11:20 +0000)]
Tests for molecular

13 years agoaddInstitutionalMembership returns the membership
Andreas Müller [Mon, 2 May 2011 11:06:21 +0000 (11:06 +0000)]
addInstitutionalMembership returns the membership

13 years agoDwca EML and ZIP
Andreas Müller [Sat, 30 Apr 2011 14:21:26 +0000 (14:21 +0000)]
Dwca EML and ZIP

13 years agobugfix for dwca (classificationId)
Andreas Müller [Fri, 29 Apr 2011 11:49:51 +0000 (11:49 +0000)]
bugfix for dwca (classificationId)

13 years agouse uuids and some other updates to dwca export
Andreas Müller [Fri, 29 Apr 2011 11:44:39 +0000 (11:44 +0000)]
use uuids and some other updates to dwca export

13 years agodocumentation on oai-pmh
Andreas Kohlbecker [Fri, 29 Apr 2011 11:39:40 +0000 (11:39 +0000)]
documentation on oai-pmh

13 years ago(no commit message)
Katja Luther [Fri, 29 Apr 2011 10:29:28 +0000 (10:29 +0000)]

13 years agotests for clone methods
Katja Luther [Fri, 29 Apr 2011 10:28:53 +0000 (10:28 +0000)]
tests for clone methods

13 years agoclone methods
Katja Luther [Fri, 29 Apr 2011 10:27:52 +0000 (10:27 +0000)]
clone methods

13 years agotest clone method
Katja Luther [Fri, 29 Apr 2011 07:32:36 +0000 (07:32 +0000)]
test clone method

13 years agofixing #885 (Valid webservice endpoint URLs display error messages) & renaming cdm...
Andreas Kohlbecker [Thu, 28 Apr 2011 15:21:51 +0000 (15:21 +0000)]
fixing #885 (Valid webservice endpoint URLs display error messages) & renaming cdm-remote servlet

13 years agotypos
Andreas Kohlbecker [Thu, 28 Apr 2011 12:29:46 +0000 (12:29 +0000)]
typos

13 years agofixing #2329 (Synonym types not shown in specimen tab)
Andreas Kohlbecker [Thu, 28 Apr 2011 12:28:52 +0000 (12:28 +0000)]
fixing #2329 (Synonym types not shown in specimen tab)

13 years agofixing #2328 (NPE in DerivedUnitBase)
Andreas Kohlbecker [Thu, 28 Apr 2011 12:23:13 +0000 (12:23 +0000)]
fixing #2328 (NPE in DerivedUnitBase)

13 years agosome further improvements to DwcA-O
Andreas Müller [Wed, 27 Apr 2011 14:45:40 +0000 (14:45 +0000)]
some further improvements to DwcA-O

13 years agoadd on to #2340 (converter is no longer needed)
Andreas Kohlbecker [Wed, 27 Apr 2011 11:55:48 +0000 (11:55 +0000)]
add on to #2340 (converter is no longer needed)

13 years agoskipping tests when internet is not available
Andreas Kohlbecker [Wed, 27 Apr 2011 11:42:20 +0000 (11:42 +0000)]
skipping tests when internet is not available

13 years agofine tuning logging
Andreas Kohlbecker [Wed, 27 Apr 2011 11:42:01 +0000 (11:42 +0000)]
fine tuning logging

13 years agofixes #2347
n.hoffmann [Wed, 27 Apr 2011 11:17:59 +0000 (11:17 +0000)]
fixes #2347

13 years agoUse interface type for get/setCdmAppController in CdmDefaultIOBase (#2347)
Andreas Müller [Tue, 26 Apr 2011 17:30:40 +0000 (17:30 +0000)]
Use interface type for get/setCdmAppController in CdmDefaultIOBase (#2347)

13 years agolatest DwcA improvements
Andreas Müller [Thu, 21 Apr 2011 15:01:46 +0000 (15:01 +0000)]
latest DwcA improvements

13 years agoupdates for DwcA import
Andreas Müller [Thu, 21 Apr 2011 14:04:28 +0000 (14:04 +0000)]
updates for DwcA import

13 years agoMethod {{{isEvenDistance}}} did not work correctly.
n.hoffmann [Thu, 21 Apr 2011 11:49:39 +0000 (11:49 +0000)]
Method {{{isEvenDistance}}} did not work correctly.

13 years agominor
n.hoffmann [Thu, 21 Apr 2011 11:44:14 +0000 (11:44 +0000)]
minor

13 years agoimprovements to DwcA export
Andreas Müller [Thu, 21 Apr 2011 11:38:02 +0000 (11:38 +0000)]
improvements to DwcA export

13 years agospecimenImportTemplate latest version
Andreas Müller [Wed, 20 Apr 2011 16:25:03 +0000 (16:25 +0000)]
specimenImportTemplate latest version

13 years agosome minor bugfixes
Andreas Müller [Wed, 20 Apr 2011 16:22:02 +0000 (16:22 +0000)]
some minor bugfixes

13 years agominor changes
Andreas Müller [Wed, 20 Apr 2011 15:58:59 +0000 (15:58 +0000)]
minor changes

13 years agowrong filenames for dwca exports
Andreas Müller [Wed, 20 Apr 2011 15:34:48 +0000 (15:34 +0000)]
wrong filenames for dwca exports

13 years agobugfixes for existing dwca exports and
Andreas Müller [Wed, 20 Apr 2011 15:32:13 +0000 (15:32 +0000)]
bugfixes for existing dwca exports and

13 years agouse generics for TypeDesignations in TaxonNameBase
Andreas Müller [Wed, 20 Apr 2011 15:01:15 +0000 (15:01 +0000)]
use generics for TypeDesignations in TaxonNameBase

13 years agoFixes a bug in PolytomousKeyNode.removeChild(int)
n.hoffmann [Wed, 20 Apr 2011 14:40:14 +0000 (14:40 +0000)]
Fixes a bug in PolytomousKeyNode.removeChild(int)

13 years agobugfix for LsidToUri Converter, works with real URIs now
Andreas Müller [Wed, 20 Apr 2011 12:04:30 +0000 (12:04 +0000)]
bugfix for LsidToUri Converter, works with real URIs now

13 years agostarted with DwcaReferenceExport
Andreas Müller [Wed, 20 Apr 2011 11:42:01 +0000 (11:42 +0000)]
started with DwcaReferenceExport

13 years agomake termbase.uri and GenBankAccession.uri real java.net.URI #2340
Andreas Müller [Wed, 20 Apr 2011 11:41:15 +0000 (11:41 +0000)]
make termbase.uri and GenBankAccession.uri real java.net.URI  #2340

13 years agomake rights.uri a real URI #2339
Andreas Müller [Wed, 20 Apr 2011 11:13:15 +0000 (11:13 +0000)]
make rights.uri a real URI #2339

13 years agoDwca images export first implementation
Andreas Müller [Wed, 20 Apr 2011 10:07:10 +0000 (10:07 +0000)]
Dwca images export first implementation

13 years agodwca distributions first implementation
Andreas Müller [Wed, 20 Apr 2011 08:47:13 +0000 (08:47 +0000)]
dwca distributions first implementation

13 years agoDarwinCoreArchive vernaculars first implementation
Andreas Müller [Wed, 20 Apr 2011 07:58:58 +0000 (07:58 +0000)]
DarwinCoreArchive vernaculars first implementation

13 years agoadded status labels to nomenclatural code
Andreas Müller [Wed, 20 Apr 2011 04:52:45 +0000 (04:52 +0000)]
added status labels to nomenclatural code

13 years agodwca improvements
Andreas Müller [Tue, 19 Apr 2011 12:36:32 +0000 (12:36 +0000)]
dwca improvements

13 years agoschema updater for polytomouskeynode parent-child bidirectional (see r11787) ->update...
Andreas Müller [Tue, 19 Apr 2011 11:58:45 +0000 (11:58 +0000)]
schema updater for polytomouskeynode parent-child bidirectional (see r11787) ->update to version 3.0.1.0

13 years agoremove imports
Andreas Müller [Tue, 19 Apr 2011 11:09:57 +0000 (11:09 +0000)]
remove imports

13 years agouse correct API methods to retrieve classification by UUID (API)
Andreas Müller [Mon, 18 Apr 2011 21:10:52 +0000 (21:10 +0000)]
use correct API methods to retrieve classification by UUID (API)

13 years agobugfix and first dwca implementation
Andreas Müller [Mon, 18 Apr 2011 14:44:17 +0000 (14:44 +0000)]
bugfix and first dwca implementation

13 years agobugfix for generic setter (missing type)
Andreas Müller [Mon, 18 Apr 2011 14:43:39 +0000 (14:43 +0000)]
bugfix for generic setter (missing type)

13 years agoremove imports
Andreas Müller [Mon, 18 Apr 2011 13:39:04 +0000 (13:39 +0000)]
remove imports

13 years agorefactoring export configurators and states, added dwcaTaxExport
Andreas Müller [Mon, 18 Apr 2011 13:34:53 +0000 (13:34 +0000)]
refactoring export configurators and states, added dwcaTaxExport

13 years agominor
Andreas Müller [Mon, 18 Apr 2011 13:26:23 +0000 (13:26 +0000)]
minor