cdmlib.git
4 years agoref #7597 Adapt to service changes and rename long running method
Patrick Plitzner [Thu, 1 Aug 2019 10:17:06 +0000 (12:17 +0200)]
ref #7597 Adapt to service changes and rename long running method

4 years agofix typo
Katja Luther [Thu, 1 Aug 2019 10:07:07 +0000 (12:07 +0200)]
fix typo

4 years agoref #8435: differ between info and debug level
Katja Luther [Thu, 1 Aug 2019 09:58:09 +0000 (11:58 +0200)]
ref #8435: differ between info and debug level

4 years agoref #8431: adaptions to show the export name in progress monitor
Katja Luther [Wed, 31 Jul 2019 13:36:57 +0000 (15:36 +0200)]
ref #8431: adaptions to show the export name in progress monitor

4 years agoref #7597 Aggregation for each taxon based on associated specimens
Patrick Plitzner [Thu, 1 Aug 2019 08:01:18 +0000 (10:01 +0200)]
ref #7597 Aggregation for each taxon based on associated specimens

4 years agominor
Andreas Müller [Thu, 1 Aug 2019 07:03:16 +0000 (09:03 +0200)]
minor

4 years agoref #8422 fix scoring for categoricalData
Andreas Müller [Thu, 1 Aug 2019 07:03:05 +0000 (09:03 +0200)]
ref #8422 fix scoring for categoricalData

4 years agominor
Andreas Müller [Thu, 1 Aug 2019 07:02:13 +0000 (09:02 +0200)]
minor

4 years agoref #8422 let PKGenerator only work on TaxonDescriptions for now
Andreas Müller [Thu, 1 Aug 2019 07:01:05 +0000 (09:01 +0200)]
ref #8422 let PKGenerator only work on TaxonDescriptions for now

4 years agoref #8434 turing FeatureTree contollers into TermTree controllers
Andreas Kohlbecker [Thu, 1 Aug 2019 06:49:21 +0000 (08:49 +0200)]
ref #8434 turing FeatureTree contollers into TermTree controllers

4 years agoref #8414 adding cycle detection to loadFieldUnitDTO()
Andreas Kohlbecker [Wed, 31 Jul 2019 12:14:54 +0000 (14:14 +0200)]
ref #8414 adding cycle detection to loadFieldUnitDTO()

4 years agofix #8299: add typification columns to scientific name table of cdm light
Katja Luther [Wed, 31 Jul 2019 08:32:57 +0000 (10:32 +0200)]
fix #8299: add typification columns to scientific name table of cdm light

4 years agoref #8422 PolytomousKeyGenerator: improving sort order and fixing score for quantitat...
Andreas Müller [Tue, 30 Jul 2019 19:40:09 +0000 (21:40 +0200)]
ref #8422 PolytomousKeyGenerator: improving sort order and fixing score for quantitative data, + further refactoring

4 years agofix #8426 fix IOOB Exception in RegistrationWorkingSet serialization
Andreas Müller [Tue, 30 Jul 2019 19:37:59 +0000 (21:37 +0200)]
fix #8426 fix IOOB Exception in RegistrationWorkingSet serialization

4 years agoref #8422 refactoring PKGenerator+test and minor fixes
Andreas Müller [Tue, 30 Jul 2019 15:14:02 +0000 (17:14 +0200)]
ref #8422 refactoring PKGenerator+test and minor fixes

4 years agoref #8414 renaming taxon/{uuid}/specimensOrObservationDTOs to taxon/{uuid}/fieldUnitDTOs
Andreas Kohlbecker [Tue, 30 Jul 2019 12:22:08 +0000 (14:22 +0200)]
ref #8414 renaming taxon/{uuid}/specimensOrObservationDTOs to  taxon/{uuid}/fieldUnitDTOs

4 years agoref #8390 uncommenting typeDesignationsInHomotypicalGroup service endpoints
Andreas Kohlbecker [Tue, 30 Jul 2019 11:46:38 +0000 (13:46 +0200)]
ref #8390 uncommenting typeDesignationsInHomotypicalGroup service endpoints

4 years agofirst implementation of /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
Andreas Kohlbecker [Mon, 29 Jul 2019 12:05:54 +0000 (14:05 +0200)]
first implementation of /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup

4 years agoref #8414 refactoring OccurrenceController:
Andreas Kohlbecker [Tue, 30 Jul 2019 06:44:18 +0000 (08:44 +0200)]
ref #8414 refactoring OccurrenceController:
  - method to load a single FieldUnitDTO
  - adding all intermediate derivatives to the FieldUnitDTO
  - renaming service endpoint mapping to fieldUnitDTO
  - adding missing @Transactional annotations
  - Factory method in abstract DerivateDTO to construct specific subtype DTOs

4 years agoRemove wildcard from generics
Patrick Plitzner [Mon, 29 Jul 2019 12:31:40 +0000 (14:31 +0200)]
Remove wildcard from generics

4 years agoref #8406 cleaning up occurrence controller code
Andreas Kohlbecker [Mon, 29 Jul 2019 12:02:02 +0000 (14:02 +0200)]
ref #8406 cleaning up occurrence controller code

4 years agofix PolytomousKeyGenerator (not yet ready)
Andreas Müller [Fri, 26 Jul 2019 23:22:45 +0000 (01:22 +0200)]
fix PolytomousKeyGenerator (not yet ready)

4 years agoadd some factory methods
Andreas Müller [Fri, 26 Jul 2019 23:22:06 +0000 (01:22 +0200)]
add some factory methods

4 years agoallow handle multiTaxon nodes in polytomousKey.print
Andreas Müller [Fri, 26 Jul 2019 23:21:36 +0000 (01:21 +0200)]
allow handle multiTaxon nodes in polytomousKey.print

4 years agofix asList(Recursive) methods
Andreas Müller [Fri, 26 Jul 2019 23:20:24 +0000 (01:20 +0200)]
fix asList(Recursive) methods

4 years agoadapt DescriptiveDataSet to allow also descriptive systems with features not only...
Andreas Müller [Fri, 26 Jul 2019 23:19:05 +0000 (01:19 +0200)]
adapt DescriptiveDataSet to allow also descriptive systems with features not only characters

4 years agocleanup
Andreas Müller [Fri, 26 Jul 2019 23:18:04 +0000 (01:18 +0200)]
cleanup

4 years agoadd test to cdmlib-cache pom
Andreas Müller [Fri, 26 Jul 2019 10:28:15 +0000 (12:28 +0200)]
add test to cdmlib-cache pom

4 years agoref #8238 Allow adding term subtypes to TermRelationBases
Patrick Plitzner [Fri, 26 Jul 2019 09:06:30 +0000 (11:06 +0200)]
ref #8238 Allow adding term subtypes to TermRelationBases

4 years agofix problem in CacheLoader
Andreas Müller [Fri, 26 Jul 2019 07:28:30 +0000 (09:28 +0200)]
fix problem in CacheLoader

4 years agoRevert "Revert "update cached model for schema version 5.8""
Patrick Plitzner [Fri, 26 Jul 2019 07:02:10 +0000 (09:02 +0200)]
Revert "Revert "update cached model for schema version 5.8""

This reverts commit 6fbe8628082d5f62797062febd0921d93708c275.

4 years agoRevert "update cached model for schema version 5.8"
Patrick Plitzner [Fri, 26 Jul 2019 05:55:29 +0000 (07:55 +0200)]
Revert "update cached model for schema version 5.8"

This reverts commit 2be44701da8b296a6ac1008376bdda834b2ffd65.

4 years agominor
Andreas Müller [Thu, 25 Jul 2019 23:55:39 +0000 (01:55 +0200)]
minor

4 years agocleanup
Andreas Müller [Thu, 25 Jul 2019 23:46:09 +0000 (01:46 +0200)]
cleanup

4 years agocleanup
Andreas Müller [Thu, 25 Jul 2019 23:28:04 +0000 (01:28 +0200)]
cleanup

4 years agominor
Andreas Müller [Thu, 25 Jul 2019 23:05:07 +0000 (01:05 +0200)]
minor

4 years agominor
Andreas Müller [Thu, 25 Jul 2019 23:00:40 +0000 (01:00 +0200)]
minor

4 years agominor
Andreas Müller [Thu, 25 Jul 2019 22:56:21 +0000 (00:56 +0200)]
minor

4 years agominor
Andreas Müller [Thu, 25 Jul 2019 22:46:13 +0000 (00:46 +0200)]
minor

4 years agominor
Andreas Müller [Thu, 25 Jul 2019 22:29:20 +0000 (00:29 +0200)]
minor

4 years agocleanup TermTree.clone
Andreas Müller [Thu, 25 Jul 2019 22:11:41 +0000 (00:11 +0200)]
cleanup TermTree.clone

4 years agocleanup, javadoc and test for notnull check for termtype in TermTree
Andreas Müller [Thu, 25 Jul 2019 22:11:13 +0000 (00:11 +0200)]
cleanup, javadoc and test for notnull check for termtype in TermTree

4 years agoref #6794 rename other TermTree.NewInstance methods and set old version to deprecated
Andreas Müller [Thu, 25 Jul 2019 14:20:40 +0000 (16:20 +0200)]
ref #6794 rename other TermTree.NewInstance methods and set old version to deprecated

4 years agoupdate javadoc for TermTree
Andreas Müller [Thu, 25 Jul 2019 14:00:09 +0000 (16:00 +0200)]
update javadoc for TermTree

(cherry picked from commit 14b218305dfe9023a44d8c7da6e33715a6ef4ba6)

4 years agoref #6794 rename TermTree.NewInstance and set old version to deprecated
Andreas Müller [Thu, 25 Jul 2019 13:59:38 +0000 (15:59 +0200)]
ref #6794 rename TermTree.NewInstance and set old version to deprecated

(cherry picked from commit 08b758e2bfba66c82fbc5a636e455edcccb9fa11)

4 years agoref #8407
Andreas Müller [Thu, 25 Jul 2019 13:22:13 +0000 (15:22 +0200)]
ref #8407

4 years agoremove createDefaultFeatureTree from ITermTreeService
Andreas Müller [Thu, 25 Jul 2019 13:21:10 +0000 (15:21 +0200)]
remove createDefaultFeatureTree from ITermTreeService

4 years agoref #6794 rename IFeatureTreeDao in ITermTreeDao
Andreas Müller [Thu, 25 Jul 2019 13:20:27 +0000 (15:20 +0200)]
ref #6794 rename IFeatureTreeDao in ITermTreeDao

4 years agocommenting doGetTypeDesignationsInHomotypicalGroup() methods which have been comitted...
Andreas Kohlbecker [Thu, 25 Jul 2019 08:25:36 +0000 (10:25 +0200)]
commenting doGetTypeDesignationsInHomotypicalGroup() methods which have been comitted too early

4 years agoupdate cached model for schema version 5.8
Andreas Müller [Thu, 25 Jul 2019 08:16:37 +0000 (10:16 +0200)]
update cached model for schema version 5.8

4 years agocleanup
Andreas Müller [Thu, 25 Jul 2019 08:15:51 +0000 (10:15 +0200)]
cleanup

4 years agoref #8394 adding nameUUIDs to NameCatalogueController responses
Andreas Kohlbecker [Tue, 23 Jul 2019 05:33:42 +0000 (07:33 +0200)]
ref #8394 adding nameUUIDs to NameCatalogueController responses

4 years agoref #8394 adding nameUuid to NameCatalogueController responses
Andreas Kohlbecker [Mon, 22 Jul 2019 16:45:25 +0000 (18:45 +0200)]
ref #8394 adding nameUuid to NameCatalogueController responses

4 years agofix #8395 avoiding NPE in NameCatalogueController.getDatasetIdName()
Andreas Kohlbecker [Mon, 22 Jul 2019 16:10:08 +0000 (18:10 +0200)]
fix #8395 avoiding NPE in NameCatalogueController.getDatasetIdName()

4 years agoupdate H2 test DB
Andreas Müller [Wed, 24 Jul 2019 17:44:00 +0000 (19:44 +0200)]
update H2 test DB

4 years agoref #7470 update script correct keys for TextualTypeDesignation_LanguageString
Andreas Müller [Wed, 24 Jul 2019 17:37:50 +0000 (19:37 +0200)]
ref #7470 update script correct keys for TextualTypeDesignation_LanguageString

4 years agoref #8404 further cleanup for stepList integration
Andreas Müller [Wed, 24 Jul 2019 17:36:46 +0000 (19:36 +0200)]
ref #8404 further cleanup for stepList integration

4 years agoref #7470 add TextualTypeDesignation to FullCoverageDataGenerator and add Adder to...
Andreas Müller [Wed, 24 Jul 2019 17:34:13 +0000 (19:34 +0200)]
ref #7470 add TextualTypeDesignation to FullCoverageDataGenerator and add Adder to TaxonName

4 years agoref #4884 allow null for Reference_AUD.refType
Andreas Müller [Wed, 24 Jul 2019 16:13:37 +0000 (18:13 +0200)]
ref #4884 allow null for Reference_AUD.refType

4 years agoref #4884 unify datatype handling in schema updaters
Andreas Müller [Wed, 24 Jul 2019 16:12:56 +0000 (18:12 +0200)]
ref #4884 unify datatype handling in schema updaters

4 years agocleanup
Andreas Müller [Wed, 24 Jul 2019 16:11:15 +0000 (18:11 +0200)]
cleanup

4 years agoref #8404 Add update step list within updaters
Andreas Müller [Wed, 24 Jul 2019 14:24:21 +0000 (16:24 +0200)]
ref #8404 Add update step list within updaters

4 years ago#8398 add botanical codes prior to 1990
Andreas Müller [Wed, 24 Jul 2019 10:01:40 +0000 (12:01 +0200)]
#8398 add botanical codes prior to 1990

4 years agominor
Andreas Müller [Wed, 24 Jul 2019 09:45:35 +0000 (11:45 +0200)]
minor

4 years agoref #7334 remove TaxonBase.proParte and partial and ref #8398 add codeEditon to nomSt...
Andreas Müller [Wed, 24 Jul 2019 09:45:22 +0000 (11:45 +0200)]
ref #7334 remove TaxonBase.proParte and partial and ref #8398 add codeEditon to nomStatus and nameRelations

4 years agoref #6794 remove FeatureNodeService from BatchValidationUtil
Andreas Müller [Wed, 24 Jul 2019 09:24:16 +0000 (11:24 +0200)]
ref #6794 remove FeatureNodeService from BatchValidationUtil

4 years agoref #6794 delete FeatureDao
Andreas Müller [Wed, 24 Jul 2019 09:20:46 +0000 (11:20 +0200)]
ref #6794 delete FeatureDao

4 years agoref #6794 javadoc update FeatureTree -> TermTree
Andreas Müller [Wed, 24 Jul 2019 09:14:07 +0000 (11:14 +0200)]
ref #6794 javadoc update FeatureTree -> TermTree

4 years agoref #6794 some adaptations in Jaxb to FeatureTree -> TermTree
Andreas Müller [Wed, 24 Jul 2019 09:13:36 +0000 (11:13 +0200)]
ref #6794 some adaptations in Jaxb to FeatureTree -> TermTree

4 years agoref #6794 adapt jsonConfigurations.xml from FeatureTree/Node -> TermTree/Node
Andreas Müller [Wed, 24 Jul 2019 09:12:18 +0000 (11:12 +0200)]
ref #6794 adapt jsonConfigurations.xml from FeatureTree/Node -> TermTree/Node

4 years agoref #6794 add TermTreeService and TermNodeService to httpInvokerServices
Andreas Müller [Wed, 24 Jul 2019 09:11:00 +0000 (11:11 +0200)]
ref #6794 add TermTreeService and TermNodeService to httpInvokerServices

4 years agoref #6794 remove FeatureTree from some hibernate.cfgs again
Andreas Müller [Wed, 24 Jul 2019 09:10:07 +0000 (11:10 +0200)]
ref #6794 remove FeatureTree from some hibernate.cfgs again

4 years agoref #8281 add doubtful to TaxonNode (remaining)
Andreas Müller [Wed, 24 Jul 2019 09:08:13 +0000 (11:08 +0200)]
ref #8281 add doubtful to TaxonNode (remaining)

4 years agoremove uplaced, excluded, partial and proparte from TaxonBase test data
Andreas Müller [Tue, 23 Jul 2019 20:18:11 +0000 (22:18 +0200)]
remove uplaced, excluded, partial and proparte from TaxonBase test data

4 years agoref #8281 add doubtful to TaxonNode
Andreas Müller [Tue, 23 Jul 2019 20:08:50 +0000 (22:08 +0200)]
ref #8281 add doubtful to TaxonNode

4 years agofix #8398 add nomenclatural code edition to nomStatus, NameRelationship and HybridRel...
Andreas Müller [Tue, 23 Jul 2019 18:42:21 +0000 (20:42 +0200)]
fix #8398 add nomenclatural code edition to nomStatus, NameRelationship and HybridRelationship and make RuleConsidered an embedded class

4 years agofix potential NPE in GatheringEvent.clone
Andreas Müller [Tue, 23 Jul 2019 18:39:12 +0000 (20:39 +0200)]
fix potential NPE in GatheringEvent.clone

4 years agocleanup
Andreas Müller [Tue, 23 Jul 2019 18:38:37 +0000 (20:38 +0200)]
cleanup

4 years agoref #6794 ignore FeatureTest
Andreas Müller [Mon, 22 Jul 2019 16:42:39 +0000 (18:42 +0200)]
ref #6794 ignore FeatureTest

4 years agocleanup
Andreas Müller [Mon, 22 Jul 2019 16:42:14 +0000 (18:42 +0200)]
cleanup

4 years agoref #6794 add TermNodeService and TermTreeService and make FeatureXXX services deprecated
Andreas Müller [Mon, 22 Jul 2019 16:41:52 +0000 (18:41 +0200)]
ref #6794 add TermNodeService and TermTreeService and make FeatureXXX services deprecated

4 years agoref #6794 rename some parameters, methods and classes
Andreas Müller [Mon, 22 Jul 2019 16:37:41 +0000 (18:37 +0200)]
ref #6794 rename some parameters, methods and classes

4 years agoref #6794 rename TermTreeNode -> TermNode
Andreas Müller [Mon, 22 Jul 2019 11:38:16 +0000 (13:38 +0200)]
ref #6794 rename TermTreeNode -> TermNode

4 years agoref #6794 rename getFeatureNode -> getTermNode in cdmlib-print
Andreas Müller [Mon, 22 Jul 2019 11:37:54 +0000 (13:37 +0200)]
ref #6794 rename getFeatureNode -> getTermNode in cdmlib-print

4 years agoref #6794 rename TermTreeNode -> TermNode
Andreas Müller [Mon, 22 Jul 2019 11:35:49 +0000 (13:35 +0200)]
ref #6794 rename TermTreeNode -> TermNode

4 years agoignore ConfigFileUtilTest.testGetFolderSeperator
Andreas Müller [Mon, 22 Jul 2019 11:32:18 +0000 (13:32 +0200)]
ignore ConfigFileUtilTest.testGetFolderSeperator

4 years agoref #6794 rename TermTreeNode -> TermNode
Andreas Müller [Mon, 22 Jul 2019 11:31:05 +0000 (13:31 +0200)]
ref #6794 rename TermTreeNode -> TermNode

4 years agoref #6794 finalize FeatureTreeMover (update treeindex)
Andreas Müller [Fri, 19 Jul 2019 21:28:22 +0000 (23:28 +0200)]
ref #6794 finalize FeatureTreeMover (update treeindex)

4 years agominor
Andreas Müller [Fri, 19 Jul 2019 21:19:08 +0000 (23:19 +0200)]
minor

4 years agoref #6794 minor adaptations of tests
Andreas Müller [Fri, 19 Jul 2019 20:24:01 +0000 (22:24 +0200)]
ref #6794 minor adaptations of tests

4 years agoref #6794 remove duplicate TermRelationshipType in test/hibernate.cfg.xml
Andreas Müller [Fri, 19 Jul 2019 19:13:04 +0000 (21:13 +0200)]
ref #6794 remove duplicate TermRelationshipType in test/hibernate.cfg.xml

4 years agoref #6794 remove FeatureTree from hibernate.cfg
Andreas Müller [Fri, 19 Jul 2019 19:03:32 +0000 (21:03 +0200)]
ref #6794 remove FeatureTree from hibernate.cfg

4 years agoref #6794 remove FeatureTree class
Andreas Müller [Fri, 19 Jul 2019 18:57:53 +0000 (20:57 +0200)]
ref #6794 remove FeatureTree class

4 years agoref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller [Wed, 19 Jun 2019 12:20:00 +0000 (14:20 +0200)]
ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

ref #6794 add TermRelation and TermRelationBase

4 years agoref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller [Wed, 6 Mar 2019 21:37:49 +0000 (22:37 +0100)]
ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

4 years agocleanup and ref #6794 rename TermTreeDaoImpl
Andreas Müller [Mon, 11 Mar 2019 13:10:26 +0000 (14:10 +0100)]
cleanup and ref #6794 rename TermTreeDaoImpl

4 years agoref #6794 add TermCollection and subclasses including TermTree
Andreas Müller [Thu, 7 Mar 2019 12:35:42 +0000 (13:35 +0100)]
ref #6794 add TermCollection and subclasses including TermTree

4 years agoref #6794 change FeatureTree to TermTree
Andreas Müller [Thu, 7 Mar 2019 12:31:08 +0000 (13:31 +0100)]
ref #6794 change FeatureTree to TermTree

4 years agoref #6794 add TermRelation and rename FeatureNode -> TermTreeNode
Andreas Müller [Wed, 6 Mar 2019 21:37:49 +0000 (22:37 +0100)]
ref #6794 add TermRelation and rename FeatureNode -> TermTreeNode

4 years agoref #6794 update some imports to model changes and add ITermTree
Andreas Müller [Fri, 19 Jul 2019 18:41:45 +0000 (20:41 +0200)]
ref #6794 update some imports to model changes and add ITermTree