jenkins [Thu, 28 Jan 2021 12:43:22 +0000 (13:43 +0100)]
Updating develop poms back to pre merge state
jenkins [Thu, 28 Jan 2021 12:43:21 +0000 (13:43 +0100)]
Merge branch 'master' into develop
jenkins [Thu, 28 Jan 2021 12:43:20 +0000 (13:43 +0100)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 28 Jan 2021 12:43:15 +0000 (13:43 +0100)]
Merge branch 'release/5.19.0'
jenkins [Thu, 28 Jan 2021 12:22:23 +0000 (13:22 +0100)]
updating poms for branch'release/5.19.0' with non-snapshot versions
jenkins [Thu, 28 Jan 2021 11:59:57 +0000 (12:59 +0100)]
updating poms for 5.20.0-SNAPSHOT development
Andreas Kohlbecker [Wed, 27 Jan 2021 12:02:04 +0000 (13:02 +0100)]
ref #9395 solving problem in derivation-dto-graph assembly (replaced field units)
Andreas Kohlbecker [Wed, 27 Jan 2021 10:20:45 +0000 (11:20 +0100)]
ref #7599 ref #9395 documenting requirements
Andreas Kohlbecker [Tue, 26 Jan 2021 13:15:36 +0000 (14:15 +0100)]
ref #9301 static helper method to find the nom. act of a registration
Andreas Kohlbecker [Tue, 26 Jan 2021 11:38:40 +0000 (12:38 +0100)]
ref #9395 simplifying findByGeneticAccessionNumber() as extra code has no imact on performance
Andreas Kohlbecker [Tue, 26 Jan 2021 11:34:06 +0000 (12:34 +0100)]
ref #9395 findByAccessionNumber() -> findByGeneticAccessionNumber(), preserving old method as deprecated
Andreas Müller [Tue, 26 Jan 2021 11:32:48 +0000 (12:32 +0100)]
cleanup
Andreas Kohlbecker [Tue, 26 Jan 2021 11:16:53 +0000 (12:16 +0100)]
ref #9395 fully implementing maxDepth for derivative assembly and fixing OccurrenceServiceImpl._findRootUnitDTO()
Andreas Müller [Tue, 26 Jan 2021 10:43:10 +0000 (11:43 +0100)]
cleanup
Andreas Müller [Tue, 26 Jan 2021 08:59:29 +0000 (09:59 +0100)]
ref #9360 preliminary exception for debugging NPE
Andreas Kohlbecker [Mon, 25 Jan 2021 18:49:59 +0000 (19:49 +0100)]
ref #9389 ref #9415 improving information assembly in derivation bouquet by recursion - adapting test
Andreas Kohlbecker [Mon, 25 Jan 2021 18:12:17 +0000 (19:12 +0100)]
ref #9389 ref #9415 improving information assembly in derivation bouquet by recursion, fixing multiple problems
Katja Luther [Mon, 25 Jan 2021 10:26:30 +0000 (11:26 +0100)]
avoid NotSerializableException for SourceDto
Andreas Müller [Fri, 22 Jan 2021 15:32:23 +0000 (16:32 +0100)]
cleanup
Andreas Müller [Fri, 22 Jan 2021 15:32:07 +0000 (16:32 +0100)]
ref #9365 update code for reuse taxon (change order for check name and check taxon and throw exceptions if not exists)
Andreas Müller [Fri, 22 Jan 2021 15:08:13 +0000 (16:08 +0100)]
cleanup
Andreas Müller [Fri, 22 Jan 2021 13:53:49 +0000 (14:53 +0100)]
make comparators of TaxonNodeXxxSortMode singletons
Andreas Müller [Fri, 22 Jan 2021 13:47:45 +0000 (14:47 +0100)]
cleanup
Andreas Müller [Fri, 22 Jan 2021 12:52:54 +0000 (13:52 +0100)]
ref #9354 unify TaxonNodeDao.listChildrenOf(...) methods (fix test)
Andreas Müller [Fri, 22 Jan 2021 12:26:17 +0000 (13:26 +0100)]
ref #9354 unify TaxonNodeDao.listChildrenOf(...) methods
Andreas Müller [Fri, 22 Jan 2021 12:24:22 +0000 (13:24 +0100)]
move TaxonNodeSortMode to model.compare
Andreas Müller [Fri, 22 Jan 2021 12:23:16 +0000 (13:23 +0100)]
cleanup
Andreas Kohlbecker [Fri, 22 Jan 2021 10:34:47 +0000 (11:34 +0100)]
ref #9276 renaming DerivationTreeSummaryDTO fields in SpecimenOrObservationBaseDTO
Andreas Kohlbecker [Fri, 22 Jan 2021 10:32:44 +0000 (11:32 +0100)]
ref #9276 documenting DerivateDataDTO and renaming to DerivationTreeSummaryDTO
Andreas Müller [Fri, 22 Jan 2021 10:33:42 +0000 (11:33 +0100)]
try to fix TaxoNodeByNameComparator issue in application context files.
Andreas Müller [Fri, 22 Jan 2021 10:16:54 +0000 (11:16 +0100)]
fix compile error and rename TaxonNodeNaturalComparator
Andreas Müller [Fri, 22 Jan 2021 10:07:21 +0000 (11:07 +0100)]
moving further Comparators to model.compare
Andreas Müller [Fri, 22 Jan 2021 09:43:39 +0000 (10:43 +0100)]
cleanup
Andreas Müller [Fri, 22 Jan 2021 09:43:19 +0000 (10:43 +0100)]
ref #9354 fix NPE in TaxonNodeByRankAndNameComparator
Andreas Kohlbecker [Fri, 22 Jan 2021 09:47:46 +0000 (10:47 +0100)]
ref #9395 adapting services and web-services to return all root units
Andreas Müller [Fri, 22 Jan 2021 09:02:18 +0000 (10:02 +0100)]
move some comparators to model.compare package, add subpackages to model.compare and some cleanup
Andreas Müller [Fri, 22 Jan 2021 07:39:31 +0000 (08:39 +0100)]
implement Comparator contract for TypedEntityComparator.java correctly
Andreas Müller [Thu, 21 Jan 2021 18:41:32 +0000 (19:41 +0100)]
fix compile error
Andreas Müller [Thu, 21 Jan 2021 18:26:06 +0000 (19:26 +0100)]
improve generics for AgentService.getUuidAndAbbrevTitleCache
Andreas Müller [Thu, 21 Jan 2021 18:25:25 +0000 (19:25 +0100)]
cleanup
Andreas Müller [Thu, 21 Jan 2021 18:23:26 +0000 (19:23 +0100)]
ref #9356 adapt TypeDesignationComparator to fix case when both type status are null ; and cleanup null compare part above
Andreas Müller [Thu, 21 Jan 2021 16:40:09 +0000 (17:40 +0100)]
cleanup and improve generics
Katja Luther [Thu, 21 Jan 2021 16:29:49 +0000 (17:29 +0100)]
fix delete taxon/name and merge createTaxon methods - continue
Andreas Müller [Thu, 21 Jan 2021 15:12:39 +0000 (16:12 +0100)]
cleanup
Andreas Müller [Thu, 21 Jan 2021 15:12:23 +0000 (16:12 +0100)]
ref #9142 code simplification
Andreas Kohlbecker [Thu, 21 Jan 2021 14:31:16 +0000 (15:31 +0100)]
ref #9301 extending init-strategy to include typeDesignation.source.*
Katja Luther [Thu, 21 Jan 2021 13:40:44 +0000 (14:40 +0100)]
merge the two create taxon methods
Katja Luther [Thu, 21 Jan 2021 13:39:27 +0000 (14:39 +0100)]
fix isDeletable for taxon with name used only once
Katja Luther [Wed, 20 Jan 2021 15:24:21 +0000 (16:24 +0100)]
ref 6308: result should be ok, if taxon can be deleted but not the name
Andreas Kohlbecker [Wed, 20 Jan 2021 14:12:51 +0000 (15:12 +0100)]
ref #7223 proper definition of IPersonalCommunication in ReferencePropertyDefinitions
Andreas Kohlbecker [Wed, 20 Jan 2021 13:08:52 +0000 (14:08 +0100)]
ref #9290 castTo method for TypedEntityReference
Katja Luther [Wed, 20 Jan 2021 11:43:12 +0000 (12:43 +0100)]
fix #9391: fix test
Katja Luther [Wed, 20 Jan 2021 10:55:10 +0000 (11:55 +0100)]
ref 6308: check for namedeletion in taxonbase isDeletable and add warning if not deletable
Katja Luther [Wed, 20 Jan 2021 10:03:57 +0000 (11:03 +0100)]
fix #9391: fix test
Katja Luther [Wed, 20 Jan 2021 08:38:48 +0000 (09:38 +0100)]
fix #9391: if no level exist remove class name in label with level in namedArea
Katja Luther [Tue, 19 Jan 2021 13:41:46 +0000 (14:41 +0100)]
ref #8889: sort taxonnodes for distribution editor on server side
Katja Luther [Mon, 18 Jan 2021 16:21:19 +0000 (17:21 +0100)]
ref #9354: add nodeDto to TaxonDistributionDTO
Andreas Kohlbecker [Mon, 18 Jan 2021 13:05:46 +0000 (14:05 +0100)]
fix #9395 DerivedUnit.collectFieldUnits() as DerivedUnit.collectRootUnits() to return all types of root units - removig debug code
Andreas Müller [Wed, 13 Jan 2021 22:01:13 +0000 (23:01 +0100)]
cleanup
Andreas Kohlbecker [Mon, 18 Jan 2021 11:17:49 +0000 (12:17 +0100)]
fix #9395 DerivedUnit.collectFieldUnits() as DerivedUnit.collectRootUnits() to return all types of root units
Katja Luther [Fri, 15 Jan 2021 08:58:50 +0000 (09:58 +0100)]
ref #9356: adapt TypeDesignationComparator
Andreas Kohlbecker [Thu, 14 Jan 2021 14:14:03 +0000 (15:14 +0100)]
ref #9332 re-organizing source(es) in TypeDesignation init-strategy
Katja Luther [Thu, 14 Jan 2021 09:10:04 +0000 (10:10 +0100)]
ref #7711: delete last media in galery should not delete description
Andreas Kohlbecker [Thu, 14 Jan 2021 07:49:39 +0000 (08:49 +0100)]
fix #9387 extending init strategy
Andreas Müller [Wed, 13 Jan 2021 15:20:09 +0000 (16:20 +0100)]
add javadoc comment
Andreas Müller [Wed, 13 Jan 2021 15:14:09 +0000 (16:14 +0100)]
fix #9384, ref #9279 fixed incorrect implementation of createShortCitation and added tests
Andreas Müller [Wed, 13 Jan 2021 15:12:08 +0000 (16:12 +0100)]
cleanup
Andreas Kohlbecker [Tue, 12 Jan 2021 15:57:35 +0000 (16:57 +0100)]
TypedEntityReference: factory method with option to supress the label & using this in TypeDesignationSetFormatter
Andreas Kohlbecker [Tue, 12 Jan 2021 15:50:11 +0000 (16:50 +0100)]
fixing inappropriate use of TypedEntityReference for creating tagged text in TypeDesignationSetFormatter
Andreas Kohlbecker [Tue, 12 Jan 2021 15:32:45 +0000 (16:32 +0100)]
fixing NPE in RegistrationDTOController when identifier is not found
Andreas Kohlbecker [Tue, 12 Jan 2021 15:32:16 +0000 (16:32 +0100)]
fix #9384 fixing author team truncation
Andreas Müller [Sun, 10 Jan 2021 09:56:48 +0000 (10:56 +0100)]
ref #6591 adapt PESI import to new original spellings handling
Andreas Müller [Sun, 10 Jan 2021 09:54:29 +0000 (10:54 +0100)]
cleanup
Andreas Müller [Sat, 9 Jan 2021 15:11:36 +0000 (16:11 +0100)]
cleanup
Andreas Müller [Sat, 9 Jan 2021 10:22:27 +0000 (11:22 +0100)]
ref #5573, ref #7612 adapt MediaSpecimenDefaultCacheStrategy to OccurrenceCacheStrategyBase
Andreas Müller [Sat, 9 Jan 2021 10:21:16 +0000 (11:21 +0100)]
ref #5575 add first version of DnaSample cache strategy
Andreas Müller [Sat, 9 Jan 2021 00:30:30 +0000 (01:30 +0100)]
ref #7612 a first (preliminary) version of MediaSpecimenDefaultCacheStrategy
Andreas Müller [Sat, 9 Jan 2021 00:03:07 +0000 (01:03 +0100)]
cleanup and use TermTestBase for model tests
Andreas Müller [Fri, 8 Jan 2021 21:30:14 +0000 (22:30 +0100)]
cleanup
Andreas Müller [Wed, 6 Jan 2021 12:07:21 +0000 (13:07 +0100)]
uncomment RdfViewTest.testNameInformationRdf as it seems to work currently
Andreas Müller [Wed, 6 Jan 2021 12:01:18 +0000 (13:01 +0100)]
cleanup
Andreas Müller [Wed, 6 Jan 2021 12:00:03 +0000 (13:00 +0100)]
ref #9114 fix RdfViewTest
Andreas Müller [Wed, 6 Jan 2021 10:00:18 +0000 (11:00 +0100)]
cleanup
Andreas Müller [Wed, 6 Jan 2021 10:00:01 +0000 (11:00 +0100)]
ref #9114 further adapt jsonConfigurations and add new constructor to URI wrapper
Andreas Müller [Wed, 6 Jan 2021 09:18:13 +0000 (10:18 +0100)]
ref #9114 adapt json mapping to new URI wrapper
Andreas Müller [Wed, 6 Jan 2021 09:17:49 +0000 (10:17 +0100)]
ref #9114 adapt javadoc for new URI wrapper user type
Andreas Müller [Wed, 6 Jan 2021 08:02:35 +0000 (09:02 +0100)]
cleanup
Andreas Müller [Wed, 6 Jan 2021 00:35:50 +0000 (01:35 +0100)]
ref #9114 add toFile() to URI to wrapper
Andreas Müller [Tue, 5 Jan 2021 20:07:57 +0000 (21:07 +0100)]
ref #9114 add compareTo to URI wrapper
Andreas Müller [Tue, 5 Jan 2021 19:08:00 +0000 (20:08 +0100)]
ref #9114 preliminary ignore RdfViewTest
Andreas Müller [Tue, 5 Jan 2021 19:06:25 +0000 (20:06 +0100)]
cleanup
Andreas Müller [Tue, 5 Jan 2021 16:59:50 +0000 (17:59 +0100)]
ref #9114 add URI Wrapper and replace all java.net.URI occurrences by the wrapper in cdmlib
Andreas Müller [Tue, 5 Jan 2021 16:45:30 +0000 (17:45 +0100)]
cleanup
Andreas Müller [Mon, 4 Jan 2021 18:38:03 +0000 (19:38 +0100)]
ref #9366 fix test in TypeDesignationSetManagerTest
Andreas Müller [Mon, 4 Jan 2021 18:14:45 +0000 (19:14 +0100)]
fix #9366 add collection name to specimen titleCache if collection code does not exist
Andreas Müller [Mon, 4 Jan 2021 18:13:43 +0000 (19:13 +0100)]
cleanup
Andreas Müller [Tue, 22 Dec 2020 09:51:14 +0000 (10:51 +0100)]
ref #4770, ref #4908, ref #5163 remove commented line as it seems to work now
Andreas Müller [Tue, 22 Dec 2020 09:10:26 +0000 (10:10 +0100)]
ref #4770, ref #4908, ref #5163 try to remove explicit setting of protected nomecncl. title in convertPerson2Team
Andreas Müller [Tue, 22 Dec 2020 08:48:35 +0000 (09:48 +0100)]
ref #4770, ref #4908, ref #5163 some finetuning on convertPerson2Team
Andreas Müller [Mon, 21 Dec 2020 23:07:19 +0000 (00:07 +0100)]
ref #4770, ref #4908, ref #5163 assert that team has protected nomenclatural title after convertPerson2Team