Andreas Müller [Thu, 19 Mar 2015 13:45:29 +0000 (13:45 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:29:30 +0000 (13:29 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:28:13 +0000 (13:28 +0000)]
merge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:24:42 +0000 (13:24 +0000)]
merge validation2 and model 3.5 into trunk
Patric Plitzner [Wed, 18 Mar 2015 08:35:15 +0000 (08:35 +0000)]
- added option to cancel import
Patric Plitzner [Tue, 17 Mar 2015 17:07:23 +0000 (17:07 +0000)]
- avoid duplicate taxon nodes in default classification
Patric Plitzner [Tue, 17 Mar 2015 17:06:22 +0000 (17:06 +0000)]
- added test file
Andreas Müller [Tue, 17 Mar 2015 14:55:23 +0000 (14:55 +0000)]
remove import
Patric Plitzner [Tue, 17 Mar 2015 13:26:07 +0000 (13:26 +0000)]
- refactored code
Patric Plitzner [Tue, 17 Mar 2015 13:19:46 +0000 (13:19 +0000)]
- enhanced progress monitor
Patric Plitzner [Tue, 17 Mar 2015 13:07:10 +0000 (13:07 +0000)]
- enhanced progress monitor
- fixed multiple default classification creation
Patric Plitzner [Tue, 17 Mar 2015 12:36:02 +0000 (12:36 +0000)]
- fixed potential NPE
Patric Plitzner [Tue, 17 Mar 2015 11:46:38 +0000 (11:46 +0000)]
- fixed taxon node matching for default classification
Katja Luther [Tue, 17 Mar 2015 10:35:55 +0000 (10:35 +0000)]
fix search for common names in editor and minor
Patric Plitzner [Tue, 17 Mar 2015 10:04:50 +0000 (10:04 +0000)]
- added new test cases (still temporarily @Ignore)
Patric Plitzner [Tue, 17 Mar 2015 10:03:29 +0000 (10:03 +0000)]
- fixed potential NPE
Patric Plitzner [Mon, 16 Mar 2015 20:10:48 +0000 (20:10 +0000)]
- fixed potential NPE when adding taxon nodes for infra species
Patric Plitzner [Mon, 16 Mar 2015 15:49:24 +0000 (15:49 +0000)]
- some code speed up
- better default classification handling
Patric Plitzner [Mon, 16 Mar 2015 14:26:29 +0000 (14:26 +0000)]
- fixed adding to default classification
Patric Plitzner [Mon, 16 Mar 2015 14:03:53 +0000 (14:03 +0000)]
- temporarily added test to ignore
Patric Plitzner [Mon, 16 Mar 2015 13:50:38 +0000 (13:50 +0000)]
- implemented new config option "Move new taxa to default classification"
Patric Plitzner [Mon, 16 Mar 2015 13:18:45 +0000 (13:18 +0000)]
- added new config option "Move new taxa to default classification"
- do not add associations for identifications with preferredFlag=false
Patric Plitzner [Mon, 16 Mar 2015 09:10:53 +0000 (09:10 +0000)]
- enhanced report
Patric Plitzner [Mon, 16 Mar 2015 08:58:56 +0000 (08:58 +0000)]
- enhanced ggbn parsing
- enhanced report
Patric Plitzner [Thu, 12 Mar 2015 19:57:10 +0000 (19:57 +0000)]
- added test to ignore temporarily
Patric Plitzner [Thu, 12 Mar 2015 18:53:14 +0000 (18:53 +0000)]
- added test to ignore temporarily
Patric Plitzner [Thu, 12 Mar 2015 18:20:38 +0000 (18:20 +0000)]
- fixed rank parsing
- added deprecate annotation to config option
Andreas Müller [Thu, 12 Mar 2015 16:03:58 +0000 (16:03 +0000)]
switching label and text in IdentifierType
Andreas Müller [Thu, 12 Mar 2015 15:55:54 +0000 (15:55 +0000)]
last updates to eFlora import
Andreas Müller [Thu, 12 Mar 2015 15:53:21 +0000 (15:53 +0000)]
add LSID and Alternative field number to Identifier Type vocabulary #4708, #4674
Patric Plitzner [Thu, 12 Mar 2015 15:07:23 +0000 (15:07 +0000)]
- temp changes for name matching
Katja Luther [Thu, 12 Mar 2015 11:20:27 +0000 (11:20 +0000)]
moveTaxon() with uuids instead of objects as arguments
Patric Plitzner [Wed, 11 Mar 2015 15:17:10 +0000 (15:17 +0000)]
- some name matching enhancements
Patric Plitzner [Wed, 11 Mar 2015 12:42:00 +0000 (12:42 +0000)]
- reverted comment of test
Patric Plitzner [Wed, 11 Mar 2015 09:50:03 +0000 (09:50 +0000)]
- added info messages to report
- enhanced taxon name matching
Andreas Müller [Tue, 10 Mar 2015 16:49:32 +0000 (16:49 +0000)]
latest updates to FotG import
Andreas Müller [Tue, 10 Mar 2015 13:42:07 +0000 (13:42 +0000)]
type removed from SpecimenTypeParser
Andreas Müller [Tue, 10 Mar 2015 13:39:14 +0000 (13:39 +0000)]
update to Markup import
Andreas Müller [Tue, 10 Mar 2015 10:31:12 +0000 (10:31 +0000)]
minor
Katja Luther [Tue, 10 Mar 2015 10:17:29 +0000 (10:17 +0000)]
Katja Luther [Tue, 10 Mar 2015 09:53:15 +0000 (09:53 +0000)]
Katja Luther [Tue, 10 Mar 2015 09:36:26 +0000 (09:36 +0000)]
Katja Luther [Tue, 10 Mar 2015 09:06:45 +0000 (09:06 +0000)]
for infrageneric unranked rank adding [unranked] (Art.37.7 Melbourne Code)
fixing bug with deletion of names and homotypicalGroups
Patric Plitzner [Thu, 5 Mar 2015 13:05:01 +0000 (13:05 +0000)]
- fixed name matching when ignoring authorship
Patric Plitzner [Wed, 4 Mar 2015 16:06:22 +0000 (16:06 +0000)]
- fixed getTaxonForName()
Patric Plitzner [Wed, 4 Mar 2015 15:35:06 +0000 (15:35 +0000)]
- added removeCountryFromLocalityText option to configurator (basically implementing the hack #4677)
Patric Plitzner [Wed, 4 Mar 2015 13:51:11 +0000 (13:51 +0000)]
- shortened regex
Patric Plitzner [Wed, 4 Mar 2015 13:34:32 +0000 (13:34 +0000)]
- fixed temporary geolocation hack
Patric Plitzner [Wed, 4 Mar 2015 13:00:16 +0000 (13:00 +0000)]
- fixed java doc
Patric Plitzner [Wed, 4 Mar 2015 11:30:18 +0000 (11:30 +0000)]
- fixed name matching when ignoring author
Patric Plitzner [Wed, 4 Mar 2015 10:36:51 +0000 (10:36 +0000)]
- re-added temporary hack
Patric Plitzner [Wed, 4 Mar 2015 09:45:01 +0000 (09:45 +0000)]
- removed temporary hack
Patric Plitzner [Wed, 4 Mar 2015 09:44:25 +0000 (09:44 +0000)]
- fixed mapUnitIdToBarcode
- fixed NPE for name parsing
Patric Plitzner [Wed, 4 Mar 2015 07:46:33 +0000 (07:46 +0000)]
- added config option to choose mapping of ABCD UnitID
- added config option to ignore authorship when matching taxa
- added first draft of ggbn extension parsing
Patric Plitzner [Tue, 3 Mar 2015 14:18:19 +0000 (14:18 +0000)]
- added ignoreAuthorship flag to ABCD import
- when set to true taxon name matching will be done without the the authorship just on the nameCache of the NonViralName
Patric Plitzner [Tue, 3 Mar 2015 13:31:13 +0000 (13:31 +0000)]
- reset all relevant dataholder fields for every unit
Patric Plitzner [Tue, 3 Mar 2015 13:28:45 +0000 (13:28 +0000)]
- added methods to handle identifiers
Patric Plitzner [Tue, 3 Mar 2015 11:46:54 +0000 (11:46 +0000)]
- fixed java doc
Andreas Müller [Mon, 2 Mar 2015 13:47:44 +0000 (13:47 +0000)]
latest changes for Markup import
Andreas Müller [Mon, 2 Mar 2015 12:38:22 +0000 (12:38 +0000)]
latest changes for Markup import
Andreas Müller [Mon, 2 Mar 2015 12:37:15 +0000 (12:37 +0000)]
add NewInstance for Names in Determination Event
Andreas Müller [Fri, 27 Feb 2015 12:50:29 +0000 (12:50 +0000)]
adadpt TimePeriodParser to include lifespan
Andreas Müller [Fri, 27 Feb 2015 10:40:26 +0000 (10:40 +0000)]
minor
Andreas Müller [Wed, 25 Feb 2015 22:11:37 +0000 (22:11 +0000)]
add some doubtful taxon relationships tom BM transformer
Katja Luther [Mon, 23 Feb 2015 09:24:48 +0000 (09:24 +0000)]
Patric Plitzner [Tue, 17 Feb 2015 11:43:30 +0000 (11:43 +0000)]
- fixed paging for compressed specimen table
Patric Plitzner [Tue, 17 Feb 2015 10:20:21 +0000 (10:20 +0000)]
- added pager to associated field units service method
Andreas Müller [Thu, 12 Feb 2015 11:41:41 +0000 (11:41 +0000)]
minor
Andreas Müller [Thu, 12 Feb 2015 10:10:39 +0000 (10:10 +0000)]
latest changes to Markup import
Andreas Müller [Thu, 12 Feb 2015 10:07:07 +0000 (10:07 +0000)]
minor
Alexander Oppermann [Thu, 12 Feb 2015 09:28:34 +0000 (09:28 +0000)]
moved flockSearch from checklistDemoController to TaxonController and renamed it to inlucdedTaxa
Katja Luther [Wed, 11 Feb 2015 13:23:45 +0000 (13:23 +0000)]
add UpdateResult and make DeleteResult a subclass
Katja Luther [Wed, 11 Feb 2015 13:23:08 +0000 (13:23 +0000)]
Andreas Müller [Wed, 11 Feb 2015 12:40:15 +0000 (12:40 +0000)]
minor
Andreas Kohlbecker [Mon, 9 Feb 2015 16:05:11 +0000 (16:05 +0000)]
adding missing statisticalValues to init strategy, related to #4639 (Show quantitative data correctly in Data portal (for Cyprus portal))
Andreas Kohlbecker [Mon, 9 Feb 2015 16:05:08 +0000 (16:05 +0000)]
typo
Andreas Müller [Fri, 6 Feb 2015 22:29:00 +0000 (22:29 +0000)]
add amplification cache test
Andreas Müller [Fri, 6 Feb 2015 17:49:14 +0000 (17:49 +0000)]
change subtree param name
Andreas Müller [Fri, 6 Feb 2015 17:38:42 +0000 (17:38 +0000)]
Add correct paging to findByIdentifier
Andreas Müller [Fri, 6 Feb 2015 17:31:20 +0000 (17:31 +0000)]
allow streaming for PagerParams
Andreas Kohlbecker [Fri, 6 Feb 2015 14:02:16 +0000 (14:02 +0000)]
fixing ambigious mvc controller mapping
Andreas Kohlbecker [Tue, 3 Feb 2015 16:09:29 +0000 (16:09 +0000)]
fixing bug regarding taxon lsid in catalogue service
Andreas Kohlbecker [Tue, 3 Feb 2015 15:15:09 +0000 (15:15 +0000)]
adding lsid to TaxonInformation
Andreas Kohlbecker [Tue, 3 Feb 2015 15:15:06 +0000 (15:15 +0000)]
working on documentation and fixing include pattern for catalogue services
Alexander Oppermann [Mon, 2 Feb 2015 15:24:24 +0000 (15:24 +0000)]
extended controller to enable feature export
Cherian Mathew [Mon, 2 Feb 2015 13:35:24 +0000 (13:35 +0000)]
DeleteResult : made serializable
remote-security : added remoting url intercept
remoting-services : made user service public
web.xml : added filter chain for securing remoting services
Katja Luther [Thu, 29 Jan 2015 12:08:31 +0000 (12:08 +0000)]
Katja Luther [Thu, 29 Jan 2015 12:02:14 +0000 (12:02 +0000)]
Katja Luther [Thu, 29 Jan 2015 10:36:34 +0000 (10:36 +0000)]
fix #4613
Alexander Oppermann [Wed, 28 Jan 2015 16:42:45 +0000 (16:42 +0000)]
created new service in classificationService
it is a first draft of the createHierarchyService
based on taxonNames and until genus level.
Patric Plitzner [Wed, 28 Jan 2015 14:26:07 +0000 (14:26 +0000)]
- check related objects for DeterminationEvents
Patric Plitzner [Wed, 28 Jan 2015 07:54:01 +0000 (07:54 +0000)]
- fixed deletion result relates objects
- removed @Ignore from tests
Patric Plitzner [Tue, 27 Jan 2015 13:26:22 +0000 (13:26 +0000)]
- replaced instanceof with isInstanceOf()
- replaced class cast expressions with deproxy
Patric Plitzner [Tue, 27 Jan 2015 12:54:20 +0000 (12:54 +0000)]
- temporarily disabled tests to have jenkins compile
Patric Plitzner [Tue, 27 Jan 2015 12:44:03 +0000 (12:44 +0000)]
- temporarily disabled tests to have jenkins compile
Patric Plitzner [Tue, 27 Jan 2015 10:55:03 +0000 (10:55 +0000)]
- error handling for report file
Patric Plitzner [Tue, 27 Jan 2015 10:54:38 +0000 (10:54 +0000)]
- only add the conflicting related objects to the DeleteResults
Andreas Kohlbecker [Mon, 26 Jan 2015 14:37:39 +0000 (14:37 +0000)]
adding hand written documentation to the swagger ui and redirecting to doc/ automatically fromt the index page
Andreas Müller [Mon, 26 Jan 2015 14:36:35 +0000 (14:36 +0000)]
remove lucene-core exclusion as it is already versioned
Andreas Müller [Mon, 26 Jan 2015 14:32:47 +0000 (14:32 +0000)]
remove guava exclusion from swagger