Patrick Plitzner [Mon, 3 Sep 2018 08:23:29 +0000 (10:23 +0200)]
ref #7674 Add equals() and hashCode() to RowWrapperDTO
Patrick Plitzner [Mon, 3 Sep 2018 05:25:58 +0000 (07:25 +0200)]
ref #7674 Fix initialization problems
Patrick Plitzner [Fri, 31 Aug 2018 10:02:37 +0000 (12:02 +0200)]
ref #7674 Create default taxon description when adding specimens
Patrick Plitzner [Thu, 30 Aug 2018 10:36:12 +0000 (12:36 +0200)]
Merge branch 'develop' into taxonDecription
Andreas Kohlbecker [Wed, 29 Aug 2018 16:31:07 +0000 (18:31 +0200)]
ref #7702 avoiding NPE in TargetEntityStates when pervious state is null
Patrick Plitzner [Wed, 29 Aug 2018 15:12:58 +0000 (17:12 +0200)]
ref #7686 Do not use null for keys in map (JSON error)
Patrick Plitzner [Wed, 29 Aug 2018 14:34:31 +0000 (16:34 +0200)]
ref #7686 Do not ignore types without type status
Patrick Plitzner [Wed, 29 Aug 2018 14:33:52 +0000 (16:33 +0200)]
ref #7686 Use titleCache if no identifier can be found
Katja Luther [Tue, 28 Aug 2018 08:24:59 +0000 (10:24 +0200)]
ref #7694: adapt typedesignation output for cdmlight export
Andreas Müller [Mon, 27 Aug 2018 09:46:43 +0000 (11:46 +0200)]
ref# 7682 remove default value for Point.precision
Andreas Müller [Fri, 24 Aug 2018 08:25:20 +0000 (10:25 +0200)]
ref #7075 fix bugs in MediaExcelImport
Patrick Plitzner [Thu, 23 Aug 2018 15:11:19 +0000 (17:11 +0200)]
ref #7674 Fix lazy init exception
Patrick Plitzner [Thu, 23 Aug 2018 08:59:06 +0000 (10:59 +0200)]
ref #7674 Make aggregate service readOnly=false
Patrick Plitzner [Thu, 23 Aug 2018 07:48:59 +0000 (09:48 +0200)]
ref #7674 Change method name
Patrick Plitzner [Wed, 22 Aug 2018 15:49:14 +0000 (17:49 +0200)]
ref #7674 Add aggregated description to data set
Patrick Plitzner [Wed, 22 Aug 2018 13:22:19 +0000 (15:22 +0200)]
ref #7674 Refactor RowWrapper
- add sub classes fort specimen and taxon row wrapper
- add service methods
Patrick Plitzner [Wed, 22 Aug 2018 12:52:23 +0000 (14:52 +0200)]
ref #7674 Refactor RowWrapper
- code cleanup
Patrick Plitzner [Wed, 22 Aug 2018 08:52:30 +0000 (10:52 +0200)]
ref #7657 code refactoring
Patrick Plitzner [Wed, 22 Aug 2018 06:39:41 +0000 (08:39 +0200)]
ref #7657 Increase loading speed for matrix
Andreas Müller [Tue, 21 Aug 2018 14:05:47 +0000 (16:05 +0200)]
fix NPE in TypeDesignationSetManager.stringify(TypeDesignationSetManager.java:522)
Katja Luther [Mon, 20 Aug 2018 09:54:17 +0000 (11:54 +0200)]
fix NPE in CdmLightExport
Andreas Müller [Mon, 20 Aug 2018 10:48:46 +0000 (12:48 +0200)]
ref #7666 adapt test for new doubtful handling in formatter
Andreas Müller [Mon, 20 Aug 2018 09:52:36 +0000 (11:52 +0200)]
cleanup
Andreas Müller [Mon, 20 Aug 2018 09:52:21 +0000 (11:52 +0200)]
ref #6682 split doubtful in rel doubtful and taxon doubtful + use full authorshipCache for MAN non-authors
Andreas Müller [Fri, 17 Aug 2018 13:24:35 +0000 (15:24 +0200)]
ref #7664 adapt return type for many methods with defined typification
jenkins [Fri, 17 Aug 2018 13:23:51 +0000 (15:23 +0200)]
Updating develop poms back to pre merge state
jenkins [Fri, 17 Aug 2018 13:23:51 +0000 (15:23 +0200)]
Merge branch 'master' into develop
jenkins [Fri, 17 Aug 2018 13:23:50 +0000 (15:23 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Fri, 17 Aug 2018 13:23:46 +0000 (15:23 +0200)]
Merge branch 'release/5.2.0'
jenkins [Fri, 17 Aug 2018 13:07:54 +0000 (15:07 +0200)]
updating poms for branch'release/5.2.0' with non-snapshot versions
jenkins [Fri, 17 Aug 2018 12:17:44 +0000 (14:17 +0200)]
updating poms for 5.3.0-SNAPSHOT development
Andreas Kohlbecker [Fri, 17 Aug 2018 11:26:40 +0000 (13:26 +0200)]
ref #7578 adding missing json config entry for the generic api
Andreas Kohlbecker [Fri, 17 Aug 2018 10:06:40 +0000 (12:06 +0200)]
removing unused duplicate property PreservedSpecimenDTOs
Katja Luther [Fri, 17 Aug 2018 09:37:58 +0000 (11:37 +0200)]
fieldUnitDTO code cleaning
Andreas Kohlbecker [Fri, 17 Aug 2018 08:53:32 +0000 (10:53 +0200)]
removing merge conflict artifact from eclipse launcher
Andreas Kohlbecker [Fri, 17 Aug 2018 08:30:24 +0000 (10:30 +0200)]
cleaning merge problem info in comment
Katja Luther [Fri, 17 Aug 2018 08:44:00 +0000 (10:44 +0200)]
code cleaning
Katja Luther [Fri, 17 Aug 2018 08:33:43 +0000 (10:33 +0200)]
fix getPreservedSpecimen in fieldUnitDTO
Patrick Plitzner [Fri, 17 Aug 2018 05:31:28 +0000 (07:31 +0200)]
Add source of type aggregation to description
Patrick Plitzner [Thu, 16 Aug 2018 10:10:27 +0000 (12:10 +0200)]
Fix LazyInitializationException
Andreas Müller [Thu, 16 Aug 2018 17:09:02 +0000 (19:09 +0200)]
ref #6682 types for both directions
Andreas Müller [Thu, 16 Aug 2018 16:47:26 +0000 (18:47 +0200)]
ref #6682 try to fix failing query in TaxonDao
Andreas Müller [Thu, 16 Aug 2018 16:15:43 +0000 (18:15 +0200)]
ref #6682 try to fix failing query in TaxonDao
Andreas Müller [Thu, 16 Aug 2018 16:09:16 +0000 (18:09 +0200)]
ref #6682 revert relType DTO
Andreas Müller [Thu, 16 Aug 2018 16:03:45 +0000 (18:03 +0200)]
ref #6682 add types and deduplicateMisapplications parameter to web service
Andreas Müller [Thu, 16 Aug 2018 15:53:08 +0000 (17:53 +0200)]
ref #6682 add types and deduplicateMisapplications parameter to web service
Andreas Müller [Thu, 16 Aug 2018 15:12:30 +0000 (17:12 +0200)]
ref #6682 add typeUuid and try to fix missing type issue
Andreas Müller [Thu, 16 Aug 2018 14:15:44 +0000 (16:15 +0200)]
ref #6682 fix misapplication deduplication issues
Andreas Müller [Thu, 16 Aug 2018 13:16:30 +0000 (15:16 +0200)]
ref #6682 include doubtful
Andreas Müller [Thu, 16 Aug 2018 11:55:45 +0000 (13:55 +0200)]
ref #6682 use TaggedTextBuilder
Andreas Müller [Thu, 16 Aug 2018 10:59:58 +0000 (12:59 +0200)]
ref #6682 further fixes for taxon relationship formatting - remove sensu tags, include Invalid Designation, use ordinary term for type
Andreas Müller [Thu, 16 Aug 2018 10:17:15 +0000 (12:17 +0200)]
ref #6682 further fixes for taxon relationship formatting - fix referenced entity issues
Katja Luther [Thu, 16 Aug 2018 09:42:07 +0000 (11:42 +0200)]
Andreas Kohlbecker [Thu, 16 Aug 2018 09:39:20 +0000 (11:39 +0200)]
deproxy of entities in TaggedTextBuilder
Andreas Müller [Thu, 16 Aug 2018 06:48:06 +0000 (08:48 +0200)]
ref #6682 further fixes for taxon relationship formatting - relsec and authors
Andreas Müller [Thu, 16 Aug 2018 06:18:24 +0000 (08:18 +0200)]
ref #6682 further fixes for taxon relationship service - better separators
Andreas Müller [Wed, 15 Aug 2018 22:49:15 +0000 (00:49 +0200)]
ref #6682 further fixes for taxon relationship service
Andreas Müller [Wed, 15 Aug 2018 22:05:35 +0000 (00:05 +0200)]
ref #6682 further fixes for taxon relationship service
Andreas Müller [Wed, 15 Aug 2018 20:14:13 +0000 (22:14 +0200)]
ref #6682 fix directions for taxonRelationship service
Andreas Müller [Wed, 15 Aug 2018 20:07:36 +0000 (22:07 +0200)]
ref #6682 further fixes for taxonRelationship service
Andreas Müller [Wed, 15 Aug 2018 19:13:42 +0000 (21:13 +0200)]
ref #6682 some changes to test taxon relationship service
Andreas Müller [Wed, 15 Aug 2018 18:16:03 +0000 (20:16 +0200)]
ref #6682 adapt inverse MAN symbol in test
Andreas Müller [Wed, 15 Aug 2018 18:10:31 +0000 (20:10 +0200)]
ref #6682 adapt taxon rel type symbols in test in for MAN inverse type
Andreas Müller [Wed, 15 Aug 2018 17:30:56 +0000 (19:30 +0200)]
ref #6682 first implementation of taxon relationship formatter and web service
Andreas Müller [Wed, 15 Aug 2018 15:47:07 +0000 (17:47 +0200)]
ref #7492 handled unpublished in NameCatalogueController.doGetTaxonInformation
Andreas Müller [Wed, 15 Aug 2018 14:56:02 +0000 (16:56 +0200)]
cleanup
Andreas Müller [Tue, 14 Aug 2018 12:01:17 +0000 (14:01 +0200)]
fix non compiling code in CommonServiceImpl (works on other installations but not on mine)
Andreas Müller [Tue, 14 Aug 2018 12:00:25 +0000 (14:00 +0200)]
fix row count issue for CsvImportBase
Andreas Müller [Tue, 14 Aug 2018 12:00:01 +0000 (14:00 +0200)]
cleanup
Katja Luther [Wed, 15 Aug 2018 12:33:39 +0000 (14:33 +0200)]
adapt occurrence search to changes in derivedUnitFacade
Katja Luther [Wed, 15 Aug 2018 12:37:54 +0000 (14:37 +0200)]
adapt cdm light test
Katja Luther [Wed, 15 Aug 2018 12:22:58 +0000 (14:22 +0200)]
fix NPE in cdm light export
Katja Luther [Wed, 15 Aug 2018 12:04:47 +0000 (14:04 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Wed, 15 Aug 2018 11:44:06 +0000 (13:44 +0200)]
minor
Katja Luther [Wed, 15 Aug 2018 11:38:18 +0000 (13:38 +0200)]
minor
Katja Luther [Wed, 15 Aug 2018 11:18:14 +0000 (13:18 +0200)]
adapt abcd import to changes in derivedUnitFacade
Katja Luther [Wed, 15 Aug 2018 11:17:07 +0000 (13:17 +0200)]
fix test for getKindOfUnit
Katja Luther [Wed, 15 Aug 2018 11:00:52 +0000 (13:00 +0200)]
adapt test for cdm light to last changes
Katja Luther [Wed, 15 Aug 2018 10:52:58 +0000 (12:52 +0200)]
Merge branch 'feature/specimenPortal' into develop
Katja Luther [Wed, 15 Aug 2018 10:52:36 +0000 (12:52 +0200)]
derivedUnitFacade should not give back the kindOfUnit for the fieldUnit only but for the derived unit
Katja Luther [Wed, 15 Aug 2018 10:51:28 +0000 (12:51 +0200)]
adapt sec ref title with datePublished freeText
Katja Luther [Wed, 15 Aug 2018 09:32:36 +0000 (11:32 +0200)]
adapt authorship string ion cdmlight
Patrick Plitzner [Wed, 15 Aug 2018 09:10:19 +0000 (11:10 +0200)]
Increase version number of site skin project
Katja Luther [Wed, 15 Aug 2018 08:05:00 +0000 (10:05 +0200)]
kindOfUnit for all derivates not only for field units
Patrick Plitzner [Wed, 15 Aug 2018 08:02:51 +0000 (10:02 +0200)]
Fix releases link
Patrick Plitzner [Tue, 14 Aug 2018 12:56:32 +0000 (14:56 +0200)]
Remove broken link
Katja Luther [Tue, 14 Aug 2018 08:21:54 +0000 (10:21 +0200)]
Merge branch 'develop' into feature/specimenPortal
Katja Luther [Tue, 14 Aug 2018 08:21:37 +0000 (10:21 +0200)]
smaller changes on specimenDTOs
Andreas Kohlbecker [Mon, 13 Aug 2018 22:52:42 +0000 (00:52 +0200)]
ref #7651 #7622 using nameService instead of CdmRepository to avoid bean factory problems
Andreas Kohlbecker [Mon, 13 Aug 2018 21:38:16 +0000 (23:38 +0200)]
ref #7651 #7622 relaxing requirement for an available registration minter
Andreas Kohlbecker [Mon, 13 Aug 2018 20:53:50 +0000 (22:53 +0200)]
ref #7622 addTypeDesignation() to receive registration uuids instead of objects
Andreas Kohlbecker [Mon, 13 Aug 2018 17:30:27 +0000 (19:30 +0200)]
ref #7622 preliminarily moving all registration management methods fom cdm-vaadin into the RegistrationService - needs further refactoring
Katja Luther [Thu, 9 Aug 2018 08:19:42 +0000 (10:19 +0200)]
ref #7643: use freetext for bibliographic short citation
Katja Luther [Wed, 8 Aug 2018 12:50:54 +0000 (14:50 +0200)]
do not throw an exception if metadata could not be loaded
Katja Luther [Wed, 8 Aug 2018 10:18:47 +0000 (12:18 +0200)]
filter intext references in cdmlight export
Patrick Plitzner [Wed, 8 Aug 2018 11:42:33 +0000 (13:42 +0200)]
ref #7597 Use LongRunningTaskService for taxon aggregation
Patrick Plitzner [Tue, 7 Aug 2018 16:40:30 +0000 (18:40 +0200)]
ref #7597 Change label of aggregated taxon description
Patrick Plitzner [Tue, 7 Aug 2018 16:03:38 +0000 (18:03 +0200)]
ref #7597 Fix row wrapper creation for direct description children
Patrick Plitzner [Tue, 7 Aug 2018 14:50:31 +0000 (16:50 +0200)]
ref #7597 Fix potential exception for multiple associated taxa
Patrick Plitzner [Tue, 7 Aug 2018 13:59:04 +0000 (15:59 +0200)]
ref #7597 Use remote progress monitor for taxon aggregation